mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 4,348,705 | 0 | A | G | 55.1% | ‑3.0 / 112.5 | 89 | intergenic (‑70/+404) | PP_3820/galU | group II intron‑encoding maturase/UTP‑glucose‑1‑phosphate uridylyltransferase |
| * | NC_002947 | 699,722 | 0 | A | G | 53.7% | ‑0.6 / 51.0 | 41 | intergenic (+115/‑129) | PP_t06/PP_23SD | tRNA‑Ala/23S ribosomal RNA |
| * | NC_002947 | 1,327,121 | 0 | C | T | 47.7% | 13.3 / 57.3 | 44 | intergenic (+97/‑196) | PP_16SE/PP_23SE | 16S ribosomal RNA/23S ribosomal RNA |
| * | NC_002947 | 195,634 | 0 | C | T | 45.4% | 69.3 / 169.0 | 130 | T380T (ACC→ACT) | PP_0168 | putative surface adhesion protein |
| * | NC_002947 | 195,559 | 0 | C | A | 33.0% | 158.8 / 92.7 | 111 | T355T (ACC→ACA) | PP_0168 | putative surface adhesion protein |
| * | NC_002947 | 196,351 | 0 | C | G | 28.3% | 192.1 / 110.5 | 127 | T619T (ACC→ACG) | PP_0168 | putative surface adhesion protein |
| * | NC_002947 | 196,327 | 0 | A | C | 26.2% | 226.7 / 113.5 | 142 | T611T (ACA→ACC) | PP_0168 | putative surface adhesion protein |
| * | NC_002947 | 196,390 | 0 | T | C | 25.7% | 175.6 / 67.0 | 105 | D632D (GAT→GAC) | PP_0168 | putative surface adhesion protein |
| * | NC_002947 | 441,326 | 0 | G | . | 24.5% | 129.7 / 41.5 | 49 | coding (207/1173 nt) | bioF | 8‑amino‑7‑oxononanoate synthase |
| * | NC_002947 | 196,306 | 0 | T | C | 23.9% | 282.2 / 94.0 | 156 | N604N (AAT→AAC) | PP_0168 | putative surface adhesion protein |
| Marginal new junction evidence (lowest skew 10 of 24 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 533510 = | NA (NA) | 5 (0.070) | 5/252 | 4.1 | 14.3% | coding (775/1194 nt) | tufA | elongation factor Tu‑A |
| ? | NC_002947 | = 533506 | 33 (0.440) | coding (771/1194 nt) | tufA | elongation factor Tu‑A | |||||
| * | ? | NC_002947 | 5671615 = | 57 (0.770) | 4 (0.070) | 4/230 | 4.2 | 6.9% | intergenic (+34/‑136) | PP_4978/PP_4979 | hypothetical protein/substrate‑binding protein |
| ? | NC_002947 | 5671700 = | 60 (0.980) | intergenic (+119/‑51) | PP_4978/PP_4979 | hypothetical protein/substrate‑binding protein | |||||
| * | ? | NC_002947 | 5496516 = | 115 (1.550) | 4 (0.060) | 4/256 | 4.4 | 3.5% | coding (169/1332 nt) | cobG | precorrin‑3B synthase |
| ? | NC_002947 | = 5496512 | 112 (1.640) | coding (173/1332 nt) | cobG | precorrin‑3B synthase | |||||
| * | ? | NC_002947 | = 2763475 | 118 (1.590) | 4 (0.060) | 4/256 | 4.4 | 3.4% | coding (436/1020 nt) | PP_2417 | iron ABC transporter permease |
| ? | NC_002947 | = 2763529 | 116 (1.700) | coding (382/1020 nt) | PP_2417 | iron ABC transporter permease | |||||
| * | ? | NC_002947 | = 645949 | 139 (1.870) | 4 (0.060) | 4/256 | 4.4 | 3.2% | coding (146/1056 nt) | PP_0556 | acetoin catabolism protein |
| ? | NC_002947 | = 646011 | 116 (1.700) | coding (84/1056 nt) | PP_0556 | acetoin catabolism protein | |||||
| * | ? | NC_002947 | 5594092 = | 53 (0.710) | 3 (0.050) | 3/222 | 4.5 | 5.0% | intergenic (‑39/+106) | PP_4921/thiC | NCS1 family transporter/phosphomethylpyrimidine synthase |
| ? | NC_002947 | 5594185 = | 72 (1.210) | intergenic (‑132/+13) | PP_4921/thiC | NCS1 family transporter/phosphomethylpyrimidine synthase | |||||
| * | ? | NC_002947 | = 2405820 | 86 (1.160) | 4 (0.060) | 4/260 | 4.5 | 4.8% | intergenic (+11/‑20) | PP_2109/PP_2110 | hypothetical protein/ribosomal large subunit pseudouridine synthase |
| ? | NC_002947 | = 2405876 | 79 (1.140) | coding (37/906 nt) | PP_2110 | ribosomal large subunit pseudouridine synthase | |||||
| * | ? | NC_002947 | = 2336979 | 54 (0.730) | 4 (0.060) | 4/260 | 4.5 | 7.7% | coding (127/297 nt) | PP_2053 | hypothetical protein |
| ? | NC_002947 | = 2337030 | 45 (0.650) | coding (178/297 nt) | PP_2053 | hypothetical protein | |||||
| * | ? | NC_002947 | = 2270263 | 99 (1.330) | 6 (0.080) | 4/268 | 4.5 | 5.7% | coding (1066/1212 nt) | metZ | O‑succinylhomoserine sulfhydrylase |
| ? | NC_002947 | = 2270301 | 102 (1.420) | coding (1104/1212 nt) | metZ | O‑succinylhomoserine sulfhydrylase | |||||
| * | ? | NC_002947 | 1731163 = | 73 (0.980) | 3 (0.050) | 3/222 | 4.5 | 4.6% | intergenic (‑76/+115) | dapE/PP_1526 | succinyl‑diaminopimelate desuccinylase/beta‑(1‑3)‑glucosyl transferase |
| ? | NC_002947 | 1731255 = | 67 (1.130) | intergenic (‑168/+23) | dapE/PP_1526 | succinyl‑diaminopimelate desuccinylase/beta‑(1‑3)‑glucosyl transferase | |||||