mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 157 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 2854050 | 76 (0.770) | 4 (0.040) | 4/146 | NT | 4.9% | coding (1167/1419 nt) | yflS | Putative malate transporter YflS |
| ? | USA300TCH1516_ALE | = 2854073 | 87 (0.970) | coding (1190/1419 nt) | yflS | Putative malate transporter YflS | |||||
| * | ? | USA300TCH1516_ALE | 2830731 = | 91 (0.930) | 4 (0.050) | 4/144 | NT | 4.2% | coding (1934/2046 nt) | lipA_2 | Lipase 1 |
| ? | USA300TCH1516_ALE | 2830769 = | 101 (1.140) | coding (1896/2046 nt) | lipA_2 | Lipase 1 | |||||
| * | ? | USA300TCH1516_ALE | 2818806 = | 115 (1.170) | 5 (0.060) | 4/142 | NT | 4.5% | intergenic (‑478/+67) | sraP/USA300HOU_RS14425 | Serine‑rich adhesin for platelets/hypothetical protein |
| ? | USA300TCH1516_ALE | 2818849 = | 111 (1.270) | intergenic (‑521/+24) | sraP/USA300HOU_RS14425 | Serine‑rich adhesin for platelets/hypothetical protein | |||||
| * | ? | USA300TCH1516_ALE | 2789561 = | 99 (1.010) | 4 (0.050) | 4/140 | NT | 4.8% | coding (1868/1875 nt) | manR_2 | Transcriptional regulator ManR |
| ? | USA300TCH1516_ALE | 2789596 = | 72 (0.840) | intergenic (+28/‑49) | manR_2/manP | Transcriptional regulator ManR/PTS system mannose‑specific EIIBCA component | |||||
| * | ? | USA300TCH1516_ALE | 2713302 = | 93 (0.950) | 4 (0.050) | 4/142 | NT | 4.7% | intergenic (‑400/+208) | isaA/USA300HOU_RS13945 | putative transglycosylase IsaA/hypothetical protein |
| ? | USA300TCH1516_ALE | 2713342 = | 78 (0.890) | intergenic (‑440/+168) | isaA/USA300HOU_RS13945 | putative transglycosylase IsaA/hypothetical protein | |||||
| * | ? | USA300TCH1516_ALE | = 2651125 | 120 (1.220) | 6 (0.070) | 5/146 | NT | 4.8% | intergenic (+68/‑305) | USA300HOU_RS13635/fbp | hypothetical protein/Fructose‑1,6‑bisphosphatase class 3 |
| ? | USA300TCH1516_ALE | = 2651145 | 129 (1.440) | intergenic (+88/‑285) | USA300HOU_RS13635/fbp | hypothetical protein/Fructose‑1,6‑bisphosphatase class 3 | |||||
| * | ? | USA300TCH1516_ALE | 2644966 = | 106 (1.080) | 4 (0.040) | 4/150 | NT | 4.3% | intergenic (‑434/+44) | yccS/sauU | Inner membrane protein YccS/putative sulfoacetate transporter SauU |
| ? | USA300TCH1516_ALE | 2645003 = | 78 (0.850) | intergenic (‑471/+7) | yccS/sauU | Inner membrane protein YccS/putative sulfoacetate transporter SauU | |||||
| * | ? | USA300TCH1516_ALE | = 2614822 | 119 (1.210) | 5 (0.060) | 4/144 | NT | 4.1% | intergenic (‑152/+151) | USA300HOU_RS13485/radD | putative lipoprotein/Putative DNA repair helicase RadD |
| ? | USA300TCH1516_ALE | = 2614871 | 125 (1.410) | intergenic (‑201/+102) | USA300HOU_RS13485/radD | putative lipoprotein/Putative DNA repair helicase RadD | |||||
| * | ? | USA300TCH1516_ALE | 2597995 = | 121 (1.230) | 4 (0.050) | 4/140 | NT | 4.1% | coding (951/1302 nt) | USA300HOU_RS13380 | hypothetical protein |
| ? | USA300TCH1516_ALE | 2598030 = | 81 (0.940) | coding (916/1302 nt) | USA300HOU_RS13380 | hypothetical protein | |||||
| * | ? | USA300TCH1516_ALE | = 2504209 | 125 (1.270) | 4 (0.050) | 4/144 | NT | 3.4% | intergenic (+134/‑131) | ydaG/USA300HOU_RS12890 | General stress protein 26/hypothetical protein |
| ? | USA300TCH1516_ALE | = 2504234 | 118 (1.330) | intergenic (+159/‑106) | ydaG/USA300HOU_RS12890 | General stress protein 26/hypothetical protein | |||||