mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.26.0
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | change | freq | score | reads | annotation | genes | product | ||
| * | NC_000913 | 477,203 | 1 | .→T | 1.8% | 2.3 0.0 ‑0.3 | 114 | coding (1415/1551 nt) | ylaB | putative membrane‑anchored cyclic‑di‑GMP phosphodiesterase |
| * | NC_000913 | 1,017,162 | 1 | .→A | 1.6% | 2.2 0.0 ‑0.8 | 125 | coding (1138/1761 nt) | ycbZ | putative peptidase |
| * | NC_000913 | 1,811,956 | 5 | .→A | 1.7% | 2.1 0.0 ‑0.6 | 116 | coding (1023/1392 nt) | ydjN | putative transporter |
| * | NC_000913 | 1,380,394 | 4 | .→A | 1.8% | 1.8 0.0 ‑0.4 | 114 | coding (247/660 nt) | ycjU | beta‑phosphoglucomutase |
| * | NC_000913 | 2,289,190 | 0 | A→C | 100.0% | 1.7 | 6 | F298V (TTC→GTC) | insH1 | IS5 transposase and trans‑activator |
| * | NC_000913 | 2,660,628 | 2 | .→A | 1.6% | 1.7 0.0 ‑0.3 | 122 | coding (904/1215 nt) | iscS | cysteine desulfurase (tRNA sulfurtransferase), PLP‑dependent |
| * | NC_000913 | 4,208,389 | 0 | A→G | 100.0% | 1.7 | 3 | noncoding (243/1542 nt) | rrsE | 16S ribosomal RNA of rrnE operon |
| * | NC_000913 | 1,717,471 | 1 | .→C | 1.8% | 1.5 0.0 ‑0.1 | 114 | coding (537/657 nt) | pdxH | pyridoxine 5'‑phosphate oxidase |
| * | NC_000913 | 4,385,107 | 1 | .→C | 1.7% | 1.5 0.0 ‑0.4 | 121 | coding (1269/1503 nt) | yjeM | putative transporter |
| * | NC_000913 | 1,811,956 | 2 | .→G | 1.7% | 1.3 0.0 ‑0.3 | 116 | coding (1023/1392 nt) | ydjN | putative transporter |
| * | NC_000913 | 1,811,956 | 3 | .→T | 1.7% | 1.3 0.0 ‑0.2 | 116 | coding (1023/1392 nt) | ydjN | putative transporter |
| * | NC_000913 | 3,997,531 | 1 | .→A | 1.6% | 1.3 0.0 ‑0.2 | 126 | coding (349/717 nt) | yigB | 5‑amino‑6‑(5‑phospho‑D‑ribitylamino)uracil phosphatase; pyrimidine phosphatase; riboflavin synthesis |
| * | NC_000913 | 3,425,112 | 0 | T→. | 100.0% | 1.2 | 1 | noncoding (1672/2904 nt) | rrlD | 23S ribosomal RNA of rrnD operon |
| * | NC_000913 | 1,380,394 | 3 | .→C | 1.8% | 1.1 0.0 ‑0.1 | 114 | coding (247/660 nt) | ycjU | beta‑phosphoglucomutase |
| * | NC_000913 | 1,380,394 | 5 | .→C | 1.8% | 1.1 0.0 ‑0.1 | 114 | coding (247/660 nt) | ycjU | beta‑phosphoglucomutase |
| * | NC_000913 | 2,660,628 | 1 | .→G | 1.6% | 1.1 0.0 ‑0.2 | 122 | coding (904/1215 nt) | iscS | cysteine desulfurase (tRNA sulfurtransferase), PLP‑dependent |
| * | NC_000913 | 2,728,961 | 0 | A→C | 100.0% | 1.1 | 1 | noncoding (224/2904 nt) | rrlG | 23S ribosomal RNA of rrnG operon |
| * | NC_000913 | 3,365,841 | 0 | A→G | 100.0% | 1.1 | 1 | I293T (ATC→ACC) | insH1 | IS5 transposase and trans‑activator |
| * | NC_000913 | 3,424,257 | 0 | G→C | 100.0% | 1.1 | 3 | noncoding (2527/2904 nt) | rrlD | 23S ribosomal RNA of rrnD operon |
| * | NC_000913 | 4,040,326 | 0 | T→G | 100.0% | 1.1 | 3 | noncoding (2808/2905 nt) | rrlA | 23S ribosomal RNA of rrnA operon |
| * | NC_000913 | 4,061,389 | 1 | .→G | 1.8% | 1.1 0.0 ‑0.1 | 110 | coding (225/981 nt) | yihM | putative sugar phosphate isomerase |
| * | NC_000913 | 227,248 | 0 | A→G | 100.0% | 1.0 | 3 | noncoding (1490/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
| * | NC_000913 | 1,811,956 | 4 | .→C | 1.7% | 1.0 0.0 ‑0.3 | 116 | coding (1023/1392 nt) | ydjN | putative transporter |
| * | NC_000913 | 2,726,733 | 0 | G→T | 100.0% | 1.0 | 3 | noncoding (2452/2904 nt) | rrlG | 23S ribosomal RNA of rrnG operon |
| * | NC_000913 | 2,726,817 | 0 | G→T | 100.0% | 1.0 | 2 | noncoding (2368/2904 nt) | rrlG | 23S ribosomal RNA of rrnG operon |
| * | NC_000913 | 3,583,906 | 0 | A→T | 100.0% | 1.0 | 2 | E77V (GAA→GTA) | insB1 | IS1 transposase B |
| * | NC_000913 | 3,622,043 | 0 | T→G | 100.0% | 1.0 | 7 | L951R (CTC→CGC) | rhsB | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| * | NC_000913 | 4,166,578 | 0 | C→A | 100.0% | 1.0 | 4 | intergenic (+293/‑81) | murI/rrsB | glutamate racemase/16S ribosomal RNA of rrnB operon |
| * | NC_000913 | 4,166,579 | 0 | A→C | 100.0% | 1.0 | 4 | intergenic (+294/‑80) | murI/rrsB | glutamate racemase/16S ribosomal RNA of rrnB operon |
| * | NC_000913 | 4,499,221 | 0 | C→A | 100.0% | 1.0 | 1 | R209R (CGC→CGA) | insD1 | IS2 transposase TnpB |
| * | NC_000913 | 16,490 | 0 | T→G | 100.0% | 0.9 | 5 | I349S (ATT→AGT) | insL1 | IS186 transposase |
| * | NC_000913 | 1,432,924 | 0 | G→T | 100.0% | 0.9 | 2 | V172L (GTA→TTA) | tfaR | Rac prophage; putative tail fiber assembly protein |
| * | NC_000913 | 1,468,186 | 0 | A→C | 100.0% | 0.9 | 2 | M214R (ATG→AGG) | insD1 | IS2 transposase TnpB |
| * | NC_000913 | 2,391,208 | 1 | .→G | 1.8% | 0.9 0.0 ‑0.1 | 114 | coding (298/1458 nt) | nuoN | NADH:ubiquinone oxidoreductase, membrane subunit N |
| * | NC_000913 | 3,131,055 | 0 | T→G | 100.0% | 0.9 | 2 | I293S (ATC→AGC) | insH1 | IS5 transposase and trans‑activator |
| * | NC_000913 | 3,365,846 | 0 | A→T | 100.0% | 0.8 | 1 | F291L (TTT→TTA) | insH1 | IS5 transposase and trans‑activator |
| * | NC_000913 | 274,861 | 0 | T→G | 100.0% | 0.7 | 4 | D86A (GAT→GCT) | insH1 | IS5 transposase and trans‑activator |
| * | NC_000913 | 3,523,008 | 1 | .→C | 1.7% | 0.6 0.0 ‑0.1 | 120 | coding (138/2553 nt) | mrcA | penicillin‑binding protein 1a, murein transglycosylase and transpeptidase |
| * | NC_000913 | 3,213,687 | 1 | .→G | 1.6% | 0.3 0.0 ‑0.1 | 124 | coding (641/1842 nt) | rpoD | RNA polymerase, sigma 70 (sigma D) factor |
| * | NC_000913 | 3,819,778 | 1 | .→C | 1.7% | 0.2 0.0 ‑0.1 | 115 | coding (1393/1683 nt) | ligB | DNA ligase, NAD(+)‑dependent |
| * | NC_000913 | 1,175,989 | 2 | .→A | 1.6% | 0.0 0.0 ‑0.0 | 128 | coding (563/1200 nt) | lolC | lipoprotein‑releasing system transmembrane protein |