mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.29.0 revision 8f9c342918e4
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 484 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 357,890 | 0 | C | A | 51.3% | 10.4 / 41.0 | 37 | L267F (TTG→TTT) | cynR | transcriptional activator of cyn operon; autorepressor |
| * | NC_000913 | 3,206,435 | 0 | C | T | 51.3% | 41.4 / 109.7 | 74 | intergenic (‑179/‑28) | ttdR/ttdA | transcriptional activator of ttdABT/L‑tartrate dehydratase, alpha subunit |
| * | NC_000913 | 599,576 | 0 | T | G | 51.3% | 99.1 / 132.8 | 76 | V288G (GTG→GGG) | cusA | copper/silver efflux system, membrane component |
| * | NC_000913 | 4,536,197 | 0 | A | T | 50.0% | 46.8 / 88.2 | 74 | intergenic (+166/+417) | yjhR/nanS | pseudogene, helicase family; putative frameshift suppressor/9‑O‑acetyl N‑acetylneuraminic acid esterase |
| * | NC_000913 | 357,875 | 0 | A | T | 47.6% | 33.5 / 19.2 | 42 | N272K (AAT→AAA) | cynR | transcriptional activator of cyn operon; autorepressor |
| * | NC_000913 | 1,969,794 | 0 | A | C | 44.4% | 78.4 / 34.5 | 64 | G397G (GGT→GGG) | tap | methyl‑accepting protein IV |
| * | NC_000913 | 1,622,816 | 0 | G | A | 44.3% | 32.3 / 61.6 | 62 | intergenic (+75/+144) | yneM/dgcZ | inner membrane‑associated protein/diguanylate cyclase, zinc‑sensing |
| * | NC_000913 | 4,555,119 | 0 | A | G | 43.9% | 77.5 / 30.9 | 66 | I182V (ATC→GTC) | uxuR | fructuronate‑inducible hexuronate regulon transcriptional repressor; autorepressor |
| * | NC_000913 | 357,880 | 0 | T | C | 43.6% | 41.3 / 12.1 | 40 | K271E (AAA→GAA) | cynR | transcriptional activator of cyn operon; autorepressor |
| * | NC_000913 | 1,504,799 | 0 | A | G | 43.3% | 88.2 / 23.1 | 60 | G361G (GGA→GGG) | insQ | IS609 transposase B |
| * | NC_000913 | 1,097,581 | 0 | A | G | 43.3% | 110.8 / 18.8 | 67 | noncoding (72/88 nt) | serX | tRNA‑Ser |
| * | NC_000913 | 941,713 | 0 | T | G | 43.1% | 105.6 / 20.0 | 65 | V252G (GTG→GGG) | dmsA | dimethyl sulfoxide reductase, anaerobic, subunit A |
| * | NC_000913 | 357,873 | 0 | C | T | 42.5% | 26.1 / 19.5 | 41 | S273N (AGC→AAC) | cynR | transcriptional activator of cyn operon; autorepressor |
| * | NC_000913 | 3,350,853 | 0 | A | C | 42.4% | 112.1 / 14.5 | 66 | S725A (TCA→GCA) | arcB | aerobic respiration control sensor histidine protein kinase, cognate to two‑component response regulators ArcA and RssB |
| * | NC_000913 | 4,302,658 | 0 | T | G | 42.1% | 99.9 / 13.3 | 58 | T141P (ACC→CCC) | mdtO | membrane translocase (MDR) of MdtNOP efflux pump, PET family |
| * | NC_000913 | 2,578,143 | 0 | A | C | 41.7% | 103.8 / 19.3 | 61 | L79V (TTA→GTA) | maeB | malic enzyme: putative oxidoreductase/phosphotransacetylase |
| * | NC_000913 | 29,486 | 0 | C | A | 41.5% | 135.5 / 42.1 | 82 | intergenic (+291/‑165) | dapB/carA | dihydrodipicolinate reductase/carbamoyl phosphate synthetase small subunit, glutamine amidotransferase |
| * | NC_000913 | 4,536,207 | 0 | G | A | 41.3% | 106.9 / 36.1 | 75 | intergenic (+176/+407) | yjhR/nanS | pseudogene, helicase family; putative frameshift suppressor/9‑O‑acetyl N‑acetylneuraminic acid esterase |
| * | NC_000913 | 646,747 | 0 | T | G | 41.2% | 118.1 / 20.7 | 68 | T255P (ACC→CCC) | citG | 2‑(5''‑triphosphoribosyl)‑3'‑dephosphocoenzyme‑A synthase |
| * | NC_000913 | 993,913 | 0 | G | C | 41.2% | 116.7 / 21.4 | 69 | G44G (GGC→GGG) | ssuB | aliphatic sulfonate ABC transporter ATPase |