mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.29.0 revision 8f9c342918e4
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 417 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 941,713 | 0 | T | G | 50.0% | 88.8 / 24.6 | 78 | V252G (GTG→GGG) | dmsA | dimethyl sulfoxide reductase, anaerobic, subunit A |
| * | NC_000913 | 730,744 | 0 | A | C | 49.1% | 70.9 / 12.9 | 59 | T388P (ACC→CCC) | rhsC | Rhs protein with putative toxin domain; putative neighboring cell growth inhibitor |
| * | NC_000913 | 4,161,148 | 0 | G | A | 48.3% | 44.2 / 35.2 | 58 | E9K (GAA→AAA) | fabR | transcriptional repressor of fabA and fabB |
| * | NC_000913 | 884,346 | 0 | C | G | 47.7% | 56.1 / 24.5 | 44 | A225G (GCG→GGG) | mdfA | multidrug efflux system protein |
| * | NC_000913 | 4,538,109 | 0 | A | C | 47.7% | 120.9 / 40.0 | 90 | G219G (GGT→GGG) | nanM | N‑acetylneuraminic acid mutarotase |
| * | NC_000913 | 501,575 | 0 | A | C | 47.7% | 104.5 / 11.8 | 65 | V555G (GTG→GGG) | ybaL | inner membrane putative NAD(P)‑binding transporter |
| * | NC_000913 | 2,676,106 | 0 | C | A | 46.6% | 45.1 / 34.9 | 58 | L240F (TTG→TTT) | yphD | putative sugar ABC transporter permease |
| * | NC_000913 | 501,572 | 0 | A | C | 46.2% | 101.9 / 10.4 | 65 | V556G (GTG→GGG) | ybaL | inner membrane putative NAD(P)‑binding transporter |
| * | NC_000913 | 2,001,918 | 0 | A | C | 45.6% | 96.2 / 14.2 | 57 | intergenic (‑129/+192) | fliA/fliC | RNA polymerase, sigma 28 (sigma F) factor/flagellar filament structural protein (flagellin) |
| * | NC_000913 | 501,564 | 0 | A | C | 45.3% | 97.9 / 22.8 | 64 | *559E (TAA→GAA) | ybaL | inner membrane putative NAD(P)‑binding transporter |
| * | NC_000913 | 1,329,894 | 0 | A | G | 45.1% | 70.6 / 12.3 | 51 | D188G (GAC→GGC) | sohB | inner membrane protein, S49 peptidase family protein |
| * | NC_000913 | 2,001,911 | 0 | G | A | 44.6% | 61.6 / 30.4 | 56 | intergenic (‑122/+199) | fliA/fliC | RNA polymerase, sigma 28 (sigma F) factor/flagellar filament structural protein (flagellin) |
| * | NC_000913 | 357,880 | 0 | T | C | 44.0% | 61.8 / 14.8 | 50 | K271E (AAA→GAA) | cynR | transcriptional activator of cyn operon; autorepressor |
| * | NC_000913 | 366,526 | 0 | T | G | 43.5% | 122.7 / 16.8 | 69 | T329P (ACC→CCC) | lacI | lactose‑inducible lac operon transcriptional repressor |
| * | NC_000913 | 357,875 | 0 | A | T | 43.1% | 70.3 / 17.9 | 51 | N272K (AAT→AAA) | cynR | transcriptional activator of cyn operon; autorepressor |
| * | NC_000913 | 4,536,197 | 0 | A | T | 42.9% | 74.8 / 55.4 | 63 | intergenic (+166/+417) | yjhR/nanS | pseudogene, helicase family; putative frameshift suppressor/9‑O‑acetyl N‑acetylneuraminic acid esterase |
| * | NC_000913 | 1,097,581 | 0 | A | G | 42.6% | 107.0 / 19.1 | 69 | noncoding (72/88 nt) | serX | tRNA‑Ser |
| * | NC_000913 | 233,118 | 0 | T | C | 42.1% | 86.7 / 15.6 | 57 | I280V (ATT→GTT) | mltD | putative membrane‑bound lytic murein transglycosylase D |
| * | NC_000913 | 29,496 | 0 | T | A | 41.9% | 96.9 / 35.1 | 62 | intergenic (+301/‑155) | dapB/carA | dihydrodipicolinate reductase/carbamoyl phosphate synthetase small subunit, glutamine amidotransferase |
| * | NC_000913 | 1,222,596 | 0 | G | A | 41.9% | 59.4 / 47.1 | 62 | F13F (TTC→TTT) | ymgD | uncharacterized protein |