mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.29.0 revision 8f9c342918e4
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 134 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 328,791 | 0 | A | G | 54.0% | 20.4 / 50.2 | 37 | S182P (TCC→CCC) | betI | choline‑inducible betIBA‑betT divergent operon transcriptional repressor |
| * | NC_000913 | 357,880 | 0 | T | C | 50.0% | 20.3 / 13.5 | 28 | K271E (AAA→GAA) | cynR | transcriptional activator of cyn operon; autorepressor |
| * | NC_000913 | 357,890 | 0 | C | A | 50.0% | 16.7 / 17.8 | 30 | L267F (TTG→TTT) | cynR | transcriptional activator of cyn operon; autorepressor |
| * | NC_000913 | 328,807 | 0 | A | T | 48.6% | 18.2 / 27.5 | 37 | D176E (GAT→GAA) | betI | choline‑inducible betIBA‑betT divergent operon transcriptional repressor |
| * | NC_000913 | 298,953 | 0 | A | C | 47.5% | 48.9 / 15.6 | 41 | V661G (GTG→GGG) | paoC | PaoABC aldehyde oxidoreductase, Moco‑containing subunit |
| * | NC_000913 | 4,604,344 | 0 | C | T | 46.7% | 51.1 / 32.5 | 60 | S62F (TCT→TTT) | bglJ | bgl operon transcriptional activator |
| * | NC_000913 | 298,960 | 0 | A | C | 46.3% | 51.0 / 15.9 | 42 | Y659D (TAT→GAT) | paoC | PaoABC aldehyde oxidoreductase, Moco‑containing subunit |
| * | NC_000913 | 2,984,718 | 0 | G | C | 46.3% | 36.3 / 23.0 | 44 | P292R (CCG→CGG) | yqeF | short chain acyltransferase |
| * | NC_000913 | 3,585,086 | 0 | A | C | 44.2% | 71.2 / 10.4 | 43 | Y580D (TAC→GAC) | ggt | gamma‑glutamyltranspeptidase |
| * | NC_000913 | 3,813,272 | 0 | C | T | 44.0% | 45.9 / 26.0 | 50 | S181L (TCG→TTG) | dfp | fused 4'‑phosphopantothenoylcysteine decarboxylase/phosphopantothenoylcysteine synthetase, FMN‑binding |
| * | NC_000913 | 2,228,275 | 0 | T | C | 43.5% | 44.1 / 12.1 | 48 | pseudogene (335/1287 nt) | mdtQ | pseudogene; putative channel/filament proteins |
| * | NC_000913 | 328,803 | 0 | T | G | 43.2% | 42.8 / 18.6 | 37 | T178P (ACC→CCC) | betI | choline‑inducible betIBA‑betT divergent operon transcriptional repressor |
| * | NC_000913 | 941,713 | 0 | T | G | 42.9% | 71.5 / 14.1 | 42 | V252G (GTG→GGG) | dmsA | dimethyl sulfoxide reductase, anaerobic, subunit A |
| * | NC_000913 | 1,157,289 | 0 | A | G | 40.9% | 54.4 / 17.4 | 45 | G171G (GGA→GGG) | ycfH | putative DNase |
| * | NC_000913 | 1,312,213 | 0 | G | A | 40.9% | 50.5 / 29.3 | 44 | L12F (CTT→TTT) | yciA | acyl‑CoA esterase |
| * | NC_000913 | 29,496 | 0 | T | A | 40.7% | 68.3 / 30.9 | 54 | intergenic (+301/‑155) | dapB/carA | dihydrodipicolinate reductase/carbamoyl phosphate synthetase small subunit, glutamine amidotransferase |
| * | NC_000913 | 657,894 | 0 | T | C | 40.4% | 53.7 / 19.4 | 48 | G15G (GGA→GGG) | flc | fluoride efflux channel, dual topology membrane protein |
| * | NC_000913 | 29,486 | 0 | C | A | 40.4% | 94.6 / 28.0 | 57 | intergenic (+291/‑165) | dapB/carA | dihydrodipicolinate reductase/carbamoyl phosphate synthetase small subunit, glutamine amidotransferase |
| * | NC_000913 | 1,604,237 | 0 | C | T | 40.0% | 57.7 / 11.8 | 45 | S64L (TCG→TTG) | lsrD | autoinducer 2 import system permease protein |
| * | NC_000913 | 3,443,277 | 0 | A | C | 39.6% | 89.1 / 15.8 | 48 | V274G (GTA→GGA) | secY | preprotein translocase membrane subunit |