mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.29.0 revision 8f9c342918e4
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 65 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,097,581 | 0 | A | G | 66.7% | 5.8 / 14.2 | 18 | noncoding (72/88 nt) | serX | tRNA‑Ser |
| * | NC_000913 | 1,969,794 | 0 | A | C | 57.1% | 22.2 / 37.5 | 28 | G397G (GGT→GGG) | tap | methyl‑accepting protein IV |
| * | NC_000913 | 4,622,250 | 0 | A | G | 57.1% | 6.6 / 21.9 | 21 | E161G (GAG→GGG) | yjjJ | putative protein kinase |
| * | NC_000913 | 2,337,723 | 0 | A | C | 56.8% | 21.5 / 43.0 | 37 | G566G (GGT→GGG) | gyrA | DNA gyrase (type II topoisomerase), subunit A |
| * | NC_000913 | 3,575,947 | 0 | A | C | 52.2% | 31.7 / 39.0 | 25 | V372G (GTT→GGT) | gntU | gluconate transporter, low affinity GNT 1 system |
| * | NC_000913 | 266,358 | 0 | T | G | 51.7% | 28.0 / 45.4 | 29 | T66P (ACC→CCC) | yafY | lipoprotein, inner membrane; degP regulator; CP4‑6 prophage |
| * | NC_000913 | 307,821 | 0 | G | T | 48.5% | 36.2 / 13.9 | 33 | Y504* (TAC→TAA) | ecpC | ECP production outer membrane protein |
| * | NC_000913 | 177,119 | 0 | G | A | 45.2% | 19.8 / 19.0 | 31 | S169F (TCC→TTC) | yadS | UPF0126 family inner membrane protein |
| * | NC_000913 | 357,890 | 0 | C | A | 44.0% | 23.1 / 10.7 | 25 | L267F (TTG→TTT) | cynR | transcriptional activator of cyn operon; autorepressor |
| * | NC_000913 | 599,576 | 0 | T | G | 42.4% | 50.8 / 13.6 | 33 | V288G (GTG→GGG) | cusA | copper/silver efflux system, membrane component |
| * | NC_000913 | 2,001,911 | 0 | G | A | 42.1% | 40.4 / 18.3 | 38 | intergenic (‑122/+199) | fliA/fliC | RNA polymerase, sigma 28 (sigma F) factor/flagellar filament structural protein (flagellin) |
| * | NC_000913 | 1,764,785 | 0 | T | A | 41.9% | 34.7 / 13.9 | 31 | intergenic (‑399/+149) | sufA/ydiH | Fe‑S cluster assembly protein/uncharacterized protein |
| * | NC_000913 | 3,745,509 | 0 | A | T | 41.7% | 40.6 / 13.2 | 37 | T236S (ACC→TCC) | yiaN | 2,3‑diketo‑L‑gulonate TRAP transporter large permease protein |
| * | NC_000913 | 1,245,234 | 0 | G | T | 41.0% | 50.7 / 15.8 | 39 | L25F (TTG→TTT) | ycgY | uncharacterized protein |
| * | NC_000913 | 2,532,979 | 0 | G | A | 40.6% | 40.4 / 12.6 | 32 | G191S (GGC→AGC) | cysK | cysteine synthase A, O‑acetylserine sulfhydrolase A subunit |
| * | NC_000913 | 635,092 | 0 | A | T | 40.5% | 49.1 / 13.3 | 37 | D95E (GAT→GAA) | ybdM | Spo0J family protein, ParB‑like nuclease domain |
| * | NC_000913 | 1,435,718 | 0 | G | A | 40.0% | 44.5 / 10.4 | 30 | intergenic (‑99/+42) | uspF/ompN | stress‑induced protein, ATP‑binding protein/outer membrane pore protein N, non‑specific |
| * | NC_000913 | 1,755,871 | 0 | T | A | 40.0% | 50.3 / 18.7 | 35 | G58G (GGT→GGA) | pykF | pyruvate kinase I |
| * | NC_000913 | 3,678,385 | 0 | T | A | 39.3% | 43.0 / 11.0 | 28 | intergenic (‑35/+35) | yhjG/yhjH | putative inner membrane‑anchored periplasmic AsmA family protein/cyclic‑di‑GMP phosphodiesterase, FlhDC‑regulated |
| * | NC_000913 | 3,745,494 | 0 | C | T | 38.9% | 45.2 / 10.5 | 37 | R231C (CGC→TGC) | yiaN | 2,3‑diketo‑L‑gulonate TRAP transporter large permease protein |