mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.29.0 revision 8f9c342918e4
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,261,055 | 0 | A | C | 57.1% | 7.0 / 15.7 | 14 | V455G (GTG→GGG) | tdcE | pyruvate formate‑lyase 4/2‑ketobutyrate formate‑lyase |
| * | NC_000913 | 2,642,689 | 0 | T | G | 56.2% | 5.4 / 13.8 | 16 | A52A (GCA→GCC) | rodZ | MreB assembly cytoskeletal protein |
| * | NC_000913 | 599,576 | 0 | T | G | 55.6% | 15.0 / 25.1 | 18 | V288G (GTG→GGG) | cusA | copper/silver efflux system, membrane component |
| * | NC_000913 | 987,494 | 0 | T | G | 54.2% | 18.3 / 32.6 | 24 | intergenic (‑512/+91) | ompF/asnS | outer membrane porin 1a (Ia;b;F)/asparaginyl tRNA synthetase |
| * | NC_000913 | 2,578,143 | 0 | A | C | 53.8% | 3.9 / 12.0 | 13 | L79V (TTA→GTA) | maeB | malic enzyme: putative oxidoreductase/phosphotransacetylase |
| * | NC_000913 | 1,969,794 | 0 | A | C | 52.6% | 22.2 / 31.1 | 19 | G397G (GGT→GGG) | tap | methyl‑accepting protein IV |
| * | NC_000913 | 4,336,901 | 0 | T | A | 52.6% | 7.6 / 25.0 | 19 | Y44F (TAT→TTT) | adiC | arginine:agmatine antiporter |
| * | NC_000913 | 4,604,344 | 0 | C | T | 52.6% | 2.5 / 21.2 | 19 | S62F (TCT→TTT) | bglJ | bgl operon transcriptional activator |
| * | NC_000913 | 606,619 | 0 | T | C | 52.0% | 12.1 / 28.2 | 25 | G255G (GGA→GGG) | ybdK | weak gamma‑glutamyl:cysteine ligase |
| * | NC_000913 | 2,001,918 | 0 | A | C | 51.8% | 29.6 / 39.7 | 27 | intergenic (‑129/+192) | fliA/fliC | RNA polymerase, sigma 28 (sigma F) factor/flagellar filament structural protein (flagellin) |
| * | NC_000913 | 505,440 | 0 | C | A | 50.0% | 11.6 / 14.2 | 20 | A176E (GCA→GAA) | ushA | bifunctional UDP‑sugar hydrolase/5'‑nucleotidase |
| * | NC_000913 | 3,397,538 | 0 | C | T | 47.8% | 13.5 / 11.3 | 24 | K86K (AAG→AAA) | rng | ribonuclease G |
| * | NC_000913 | 3,285,853 | 0 | G | T | 43.3% | 26.4 / 14.1 | 30 | A126S (GCC→TCC) | agaD | N‑acetylgalactosamine‑specific enzyme IID component of PTS |
| * | NC_000913 | 4,536,197 | 0 | A | T | 41.9% | 34.4 / 23.5 | 31 | intergenic (+166/+417) | yjhR/nanS | pseudogene, helicase family; putative frameshift suppressor/9‑O‑acetyl N‑acetylneuraminic acid esterase |
| * | NC_000913 | 3,019,592 | 0 | A | T | 35.7% | 46.5 / 11.0 | 28 | L144F (TTA→TTT) | ssnA | putative chlorohydrolase/aminohydrolase |
| * | NC_000913 | 1,704,041 | 0 | G | T | 33.3% | 54.0 / 10.1 | 33 | H90N (CAT→AAT) | ydgJ | putative oxidoreductase |
| * | NC_000913 | 3,665,702 | 0 | C | A | 33.3% | 54.9 / 12.3 | 36 | A37S (GCG→TCG) | gadX | acid resistance regulon transcriptional activator; autoactivator |
| * | NC_000913 | 2,903,715 | 0 | G | A | 32.0% | 36.6 / 11.2 | 25 | intergenic (+341/+1032) | ygcE/queE | putative kinase/7‑carboxy‑7‑deazaguanine synthase; queosine biosynthesis |
| * | NC_000913 | 4,296,060 | 0 | C | T | 31.0% | 40.0 / 19.4 | 29 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |