mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.29.0 revision 8f9c342918e4
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 380 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 357,880 | 0 | T | C | 63.9% | 13.2 / 37.1 | 37 | K271E (AAA→GAA) | cynR | transcriptional activator of cyn operon; autorepressor |
| * | NC_000913 | 357,875 | 0 | A | T | 62.5% | ‑0.6 / 43.5 | 40 | N272K (AAT→AAA) | cynR | transcriptional activator of cyn operon; autorepressor |
| * | NC_000913 | 357,890 | 0 | C | A | 61.8% | ‑6.5 / 33.6 | 34 | L267F (TTG→TTT) | cynR | transcriptional activator of cyn operon; autorepressor |
| * | NC_000913 | 941,713 | 0 | T | G | 52.7% | 58.6 / 89.4 | 55 | V252G (GTG→GGG) | dmsA | dimethyl sulfoxide reductase, anaerobic, subunit A |
| * | NC_000913 | 3,556,207 | 0 | T | C | 47.6% | 76.1 / 22.6 | 64 | S215G (AGT→GGT) | rtcA | RNA 3'‑terminal phosphate cyclase |
| * | NC_000913 | 357,873 | 0 | C | T | 46.3% | 26.4 / 23.1 | 41 | S273N (AGC→AAC) | cynR | transcriptional activator of cyn operon; autorepressor |
| * | NC_000913 | 366,526 | 0 | T | G | 45.0% | 92.5 / 20.6 | 60 | T329P (ACC→CCC) | lacI | lactose‑inducible lac operon transcriptional repressor |
| * | NC_000913 | 3,556,200 | 0 | G | A | 44.8% | 75.9 / 34.3 | 67 | S217F (TCC→TTC) | rtcA | RNA 3'‑terminal phosphate cyclase |
| * | NC_000913 | 2,001,911 | 0 | G | A | 44.1% | 56.5 / 39.8 | 59 | intergenic (‑122/+199) | fliA/fliC | RNA polymerase, sigma 28 (sigma F) factor/flagellar filament structural protein (flagellin) |
| * | NC_000913 | 4,457,105 | 0 | A | G | 44.1% | 76.4 / 14.1 | 59 | I441V (ATC→GTC) | mpl | UDP‑N‑acetylmuramate:L‑alanyl‑gamma‑D‑glutamyl‑ meso‑diaminopimelate ligase |
| * | NC_000913 | 1,413,735 | 0 | A | T | 42.9% | 66.5 / 38.8 | 56 | Y2* (TAT→TAA) | ydaC | DUF1187 family protein, Rac prophage; putative double‑strand break reduction protein |
| * | NC_000913 | 4,622,250 | 0 | A | G | 42.0% | 67.3 / 17.4 | 51 | E161G (GAG→GGG) | yjjJ | putative protein kinase |
| * | NC_000913 | 312,169 | 0 | T | G | 41.4% | 110.9 / 18.1 | 70 | L20V (TTG→GTG) | ykgL | uncharacterized protein |
| * | NC_000913 | 1,478,324 | 0 | T | G | 41.1% | 110.4 / 10.9 | 56 | G33G (GGT→GGG) | ynbB | putative CDP‑diglyceride synthase |
| * | NC_000913 | 115,797 | 0 | C | A | 40.7% | 98.4 / 26.8 | 59 | E435* (GAA→TAA) | hofB | T2SE secretion family protein; P‑loop ATPase superfamily protein |
| * | NC_000913 | 535,918 | 0 | A | G | 40.7% | 93.4 / 11.1 | 60 | E70G (GAG→GGG) | hyi | hydroxypyruvate isomerase |
| * | NC_000913 | 2,547,772 | 0 | T | G | 40.6% | 105.9 / 19.9 | 65 | V367G (GTA→GGA) | murP | N‑acetylmuramic acid permease, EIIBC component, PTS system |
| * | NC_000913 | 3,465,167 | 0 | G | T | 40.5% | 109.2 / 47.9 | 74 | C29F (TGT→TTT) | gspM | general secretory pathway component, cryptic |
| * | NC_000913 | 370,876 | 0 | C | G | 40.4% | 81.7 / 22.8 | 47 | S200R (AGC→AGG) | mhpB | 2,3‑dihydroxyphenylpropionate 1,2‑dioxygenase |
| * | NC_000913 | 3,998,178 | 0 | G | A | 40.4% | 61.8 / 26.1 | 47 | A66T (GCG→ACG) | uvrD | DNA‑dependent ATPase I and helicase II |