mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.29.0 revision 8f9c342918e4
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 345 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 907,602 | 0 | A | C | 53.1% | 40.5 / 69.0 | 49 | G227G (GGT→GGG) | ybjT | putative NAD‑dependent oxidoreductase |
| * | NC_000913 | 599,576 | 0 | T | G | 52.5% | 60.7 / 101.2 | 59 | V288G (GTG→GGG) | cusA | copper/silver efflux system, membrane component |
| * | NC_000913 | 4,604,344 | 0 | C | T | 51.0% | 28.8 / 73.8 | 52 | S62F (TCT→TTT) | bglJ | bgl operon transcriptional activator |
| * | NC_000913 | 1,222,596 | 0 | G | A | 47.7% | 25.8 / 30.5 | 44 | F13F (TTC→TTT) | ymgD | uncharacterized protein |
| * | NC_000913 | 941,713 | 0 | T | G | 46.3% | 60.7 / 23.4 | 54 | V252G (GTG→GGG) | dmsA | dimethyl sulfoxide reductase, anaerobic, subunit A |
| * | NC_000913 | 2,878,947 | 0 | C | T | 45.2% | 42.5 / 19.9 | 42 | E276K (GAA→AAA) | ygbT | multifunctional endonuclease Cas1, CRISPR adaptation protein; DNA repair enzyme |
| * | NC_000913 | 4,332,791 | 0 | A | C | 44.6% | 88.1 / 20.3 | 56 | V161G (GTG→GGG) | basS | sensory histidine kinase in two‑component regulatory system with BasR |
| * | NC_000913 | 4,604,350 | 0 | C | T | 44.2% | 47.3 / 24.9 | 52 | S64F (TCT→TTT) | bglJ | bgl operon transcriptional activator |
| * | NC_000913 | 1,478,324 | 0 | T | G | 43.9% | 91.1 / 15.3 | 57 | G33G (GGT→GGG) | ynbB | putative CDP‑diglyceride synthase |
| * | NC_000913 | 4,161,148 | 0 | G | A | 43.5% | 70.0 / 37.8 | 69 | E9K (GAA→AAA) | fabR | transcriptional repressor of fabA and fabB |
| * | NC_000913 | 3,105,489 | 0 | C | A | 43.4% | 83.2 / 26.7 | 54 | Q353K (CAA→AAA) | mltC | membrane‑bound lytic murein transglycosylase C |
| * | NC_000913 | 354,288 | 0 | T | G | 42.9% | 80.7 / 15.9 | 51 | V528G (GTG→GGG) | prpE | propionate‑‑CoA ligase |
| * | NC_000913 | 1,506,038 | 0 | A | C | 42.9% | 99.1 / 12.1 | 63 | F15V (TTT→GTT) | ydcO | BenE family inner membrane putative transporter |
| * | NC_000913 | 1,621,118 | 0 | A | C | 42.9% | 78.8 / 12.6 | 49 | V7G (GTG→GGG) | eamA | cysteine and O‑acetyl‑L‑serine efflux system |
| * | NC_000913 | 2,434,882 | 0 | T | G | 42.6% | 104.3 / 11.9 | 61 | Y252S (TAC→TCC) | truA | tRNA pseudouridine(38‑40) synthase |
| * | NC_000913 | 2,578,143 | 0 | A | C | 42.6% | 91.4 / 13.8 | 55 | L79V (TTA→GTA) | maeB | malic enzyme: putative oxidoreductase/phosphotransacetylase |
| * | NC_000913 | 4,258,974 | 0 | T | G | 42.5% | 125.4 / 10.6 | 73 | G411G (GGT→GGG) | dinF | oxidative stress resistance protein; putative MATE family efflux pump; UV and mitomycin C inducible protein |
| * | NC_000913 | 357,890 | 0 | C | A | 42.3% | 34.2 / 11.1 | 26 | L267F (TTG→TTT) | cynR | transcriptional activator of cyn operon; autorepressor |
| * | NC_000913 | 2,252,657 | 0 | C | T | 42.2% | 57.1 / 21.4 | 45 | L320F (CTT→TTT) | yeiI | putative kinase |
| * | NC_000913 | 3,508,662 | 0 | T | A | 42.2% | 69.0 / 14.9 | 45 | E384D (GAA→GAT) | yhfW | phosphopentomutase‑related metalloenzyme superfamily protein |