mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.29.0 revision 8f9c342918e4
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 333 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,350,853 | 0 | A | C | 49.0% | 67.9 / 15.2 | 49 | S725A (TCA→GCA) | arcB | aerobic respiration control sensor histidine protein kinase, cognate to two‑component response regulators ArcA and RssB |
| * | NC_000913 | 357,880 | 0 | T | C | 48.9% | 47.3 / 15.2 | 45 | K271E (AAA→GAA) | cynR | transcriptional activator of cyn operon; autorepressor |
| * | NC_000913 | 213,341 | 0 | A | G | 48.5% | 71.5 / 35.0 | 68 | G337G (GGA→GGG) | tilS | tRNA(Ile)‑lysidine synthetase |
| * | NC_000913 | 357,890 | 0 | C | A | 47.9% | 33.9 / 25.8 | 48 | L267F (TTG→TTT) | cynR | transcriptional activator of cyn operon; autorepressor |
| * | NC_000913 | 3,601,176 | 0 | T | C | 46.6% | 54.1 / 32.8 | 58 | E304G (GAA→GGA) | ftsX | putative ABC transporter permease |
| * | NC_000913 | 1,079,468 | 0 | A | G | 46.0% | 67.4 / 15.1 | 52 | D55G (GAT→GGT) | putP | proline:sodium symporter |
| * | NC_000913 | 2,678,039 | 0 | T | G | 44.7% | 71.2 / 13.2 | 48 | N108T (AAC→ACC) | yphE | putative sugar ABC transporter ATPase |
| * | NC_000913 | 1,174,610 | 0 | A | C | 44.3% | 97.9 / 14.2 | 62 | W186G (TGG→GGG) | ycfT | inner membrane protein |
| * | NC_000913 | 4,042,993 | 0 | C | T | 44.0% | 49.6 / 21.3 | 50 | F193F (TTC→TTT) | srkA | Cpx stress response Thr/Ser protein kinase; MazF antagonist protein |
| * | NC_000913 | 3,601,160 | 0 | G | A | 43.9% | 63.8 / 31.7 | 57 | F309F (TTC→TTT) | ftsX | putative ABC transporter permease |
| * | NC_000913 | 1,097,581 | 0 | A | G | 43.8% | 111.3 / 24.3 | 73 | noncoding (72/88 nt) | serX | tRNA‑Ser |
| * | NC_000913 | 3,508,657 | 0 | A | G | 42.6% | 95.1 / 22.0 | 68 | F386S (TTC→TCC) | yhfW | phosphopentomutase‑related metalloenzyme superfamily protein |
| * | NC_000913 | 2,984,718 | 0 | G | C | 42.3% | 53.5 / 28.3 | 55 | P292R (CCG→CGG) | yqeF | short chain acyltransferase |
| * | NC_000913 | 1,621,118 | 0 | A | C | 42.1% | 99.0 / 11.9 | 59 | V7G (GTG→GGG) | eamA | cysteine and O‑acetyl‑L‑serine efflux system |
| * | NC_000913 | 366,526 | 0 | T | G | 41.5% | 117.6 / 16.2 | 66 | T329P (ACC→CCC) | lacI | lactose‑inducible lac operon transcriptional repressor |
| * | NC_000913 | 941,713 | 0 | T | G | 41.5% | 95.5 / 13.9 | 53 | V252G (GTG→GGG) | dmsA | dimethyl sulfoxide reductase, anaerobic, subunit A |
| * | NC_000913 | 4,332,791 | 0 | A | C | 41.4% | 102.7 / 14.0 | 58 | V161G (GTG→GGG) | basS | sensory histidine kinase in two‑component regulatory system with BasR |
| * | NC_000913 | 1,292,458 | 0 | T | A | 41.2% | 72.5 / 25.1 | 51 | intergenic (+93/+51) | galU/hns | glucose‑1‑phosphate uridylyltransferase/global DNA‑binding transcriptional dual regulator H‑NS |
| * | NC_000913 | 3,206,435 | 0 | C | T | 41.2% | 75.8 / 41.6 | 68 | intergenic (‑179/‑28) | ttdR/ttdA | transcriptional activator of ttdABT/L‑tartrate dehydratase, alpha subunit |
| * | NC_000913 | 4,538,109 | 0 | A | C | 41.0% | 138.1 / 23.7 | 80 | G219G (GGT→GGG) | nanM | N‑acetylneuraminic acid mutarotase |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1001078 = | 67 (0.980) | 3 (0.050) | 3/288 | 12.8 | 4.3% | coding (1863/2601 nt) | elfC | putative outer membrane fimbrial subunit export usher protein |
| ? | NC_000913 | 1001090 = | 69 (1.040) | coding (1875/2601 nt) | elfC | putative outer membrane fimbrial subunit export usher protein | |||||