mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.29.0 revision 8f9c342918e4
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 327 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,206,435 | 0 | C | T | 50.8% | 27.4 / 88.0 | 61 | intergenic (‑179/‑28) | ttdR/ttdA | transcriptional activator of ttdABT/L‑tartrate dehydratase, alpha subunit |
| * | NC_000913 | 1,755,871 | 0 | T | A | 50.0% | 49.7 / 32.5 | 50 | G58G (GGT→GGA) | pykF | pyruvate kinase I |
| * | NC_000913 | 1,764,785 | 0 | T | A | 49.1% | 50.0 / 38.7 | 55 | intergenic (‑399/+149) | sufA/ydiH | Fe‑S cluster assembly protein/uncharacterized protein |
| * | NC_000913 | 599,576 | 0 | T | G | 48.5% | 77.7 / 33.1 | 66 | V288G (GTG→GGG) | cusA | copper/silver efflux system, membrane component |
| * | NC_000913 | 4,604,344 | 0 | C | T | 46.7% | 51.5 / 32.4 | 60 | S62F (TCT→TTT) | bglJ | bgl operon transcriptional activator |
| * | NC_000913 | 4,457,105 | 0 | A | G | 46.2% | 82.5 / 22.1 | 65 | I441V (ATC→GTC) | mpl | UDP‑N‑acetylmuramate:L‑alanyl‑gamma‑D‑glutamyl‑ meso‑diaminopimelate ligase |
| * | NC_000913 | 3,665,702 | 0 | C | A | 44.4% | 101.3 / 46.1 | 72 | A37S (GCG→TCG) | gadX | acid resistance regulon transcriptional activator; autoactivator |
| * | NC_000913 | 3,717,014 | 0 | T | G | 44.0% | 76.5 / 14.0 | 51 | G156G (GGT→GGG) | yiaD | multicopy suppressor of bamB; outer membrane lipoprotein |
| * | NC_000913 | 3,285,853 | 0 | G | T | 42.9% | 62.8 / 24.1 | 42 | A126S (GCC→TCC) | agaD | N‑acetylgalactosamine‑specific enzyme IID component of PTS |
| * | NC_000913 | 2,511,772 | 0 | A | C | 41.8% | 84.3 / 17.1 | 55 | V312G (GTG→GGG) | mntH | manganese/divalent cation transporter |
| * | NC_000913 | 3,556,207 | 0 | T | C | 41.7% | 89.0 / 16.9 | 60 | S215G (AGT→GGT) | rtcA | RNA 3'‑terminal phosphate cyclase |
| * | NC_000913 | 599,579 | 0 | T | G | 41.5% | 113.4 / 10.1 | 66 | V289G (GTG→GGG) | cusA | copper/silver efflux system, membrane component |
| * | NC_000913 | 366,526 | 0 | T | G | 41.0% | 111.7 / 13.8 | 61 | T329P (ACC→CCC) | lacI | lactose‑inducible lac operon transcriptional repressor |
| * | NC_000913 | 1,504,799 | 0 | A | G | 40.8% | 71.4 / 15.3 | 49 | G361G (GGA→GGG) | insQ | IS609 transposase B |
| * | NC_000913 | 3,177,748 | 0 | C | A | 40.8% | 76.2 / 24.3 | 49 | E55* (GAG→TAG) | nudF | ADP‑ribose pyrophosphatase |
| * | NC_000913 | 2,984,441 | 0 | A | C | 40.7% | 96.7 / 18.2 | 59 | G384G (GGT→GGG) | yqeF | short chain acyltransferase |
| * | NC_000913 | 3,947,850 | 0 | C | T | 40.7% | 76.5 / 36.1 | 59 | E40K (GAA→AAA) | hdfR | flhDC operon transcriptional repressor |
| * | NC_000913 | 1,825,056 | 0 | G | A | 40.6% | 36.7 / 13.3 | 32 | intergenic (‑119/+84) | ves/spy | cold‑ and stress‑inducible protein/periplasmic ATP‑independent protein refolding chaperone, stress‑induced |
| * | NC_000913 | 2,807,369 | 0 | A | C | 40.6% | 101.4 / 14.8 | 64 | T80P (ACC→CCC) | proX | glycine betaine/proline ABC transporter periplasmic binding protein; cold shock protein |
| * | NC_000913 | 1,535,789 | 0 | C | A | 40.4% | 106.9 / 18.6 | 47 | V24F (GTT→TTT) | yddE | PhzC‑PhzF family protein |