mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.29.0 revision 8f9c342918e4
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 145 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 925,900 | 0 | A | G | 55.6% | 31.0 / 46.0 | 36 | noncoding (72/88 nt) | serW | tRNA‑Ser |
| * | NC_000913 | 4,067,745 | 0 | A | G | 50.0% | 35.2 / 20.7 | 48 | L511P (CTG→CCG) | yihQ | putative sulpholipid alpha‑glucosidase; alpha‑glucosyl fluoride glucosidase |
| * | NC_000913 | 357,890 | 0 | C | A | 48.4% | 18.9 / 17.4 | 31 | L267F (TTG→TTT) | cynR | transcriptional activator of cyn operon; autorepressor |
| * | NC_000913 | 3,270,455 | 0 | G | T | 47.9% | 23.8 / 30.6 | 49 | intergenic (+853/+170) | yhaC/garK | pentapetide repeats‑related protein/glycerate kinase I |
| * | NC_000913 | 925,912 | 0 | G | C | 47.1% | 40.5 / 18.5 | 34 | noncoding (60/88 nt) | serW | tRNA‑Ser |
| * | NC_000913 | 5,159 | 0 | G | A | 46.7% | 39.1 / 28.2 | 45 | intergenic (+139/‑75) | thrC/yaaX | L‑threonine synthase/DUF2502 family putative periplasmic protein |
| * | NC_000913 | 1,222,233 | 0 | G | A | 46.4% | 25.9 / 12.4 | 29 | pseudogene (60/75 nt) | ycgH | pseudogene; putative ATP‑binding component of a transport system |
| * | NC_000913 | 1,397,830 | 0 | T | C | 46.3% | 48.3 / 10.7 | 42 | I265V (ATT→GTT) | uspE | stress‑induced protein |
| * | NC_000913 | 1,222,596 | 0 | G | A | 45.7% | 26.2 / 22.4 | 35 | F13F (TTC→TTT) | ymgD | uncharacterized protein |
| * | NC_000913 | 2,921,173 | 0 | T | C | 45.0% | 49.8 / 10.3 | 40 | I310V (ATT→GTT) | gudP | putative D‑glucarate transporter |
| * | NC_000913 | 599,576 | 0 | T | G | 44.7% | 64.1 / 19.4 | 47 | V288G (GTG→GGG) | cusA | copper/silver efflux system, membrane component |
| * | NC_000913 | 657,676 | 0 | A | C | 43.8% | 68.2 / 12.2 | 48 | V88G (GTG→GGG) | flc | fluoride efflux channel, dual topology membrane protein |
| * | NC_000913 | 4,287,719 | 0 | T | A | 42.9% | 50.3 / 30.0 | 49 | intergenic (‑348/‑45) | acs/nrfA | acetyl‑CoA synthetase/nitrite reductase, formate‑dependent, cytochrome |
| * | NC_000913 | 3,864,099 | 0 | C | A | 42.1% | 56.8 / 13.3 | 39 | R67R (CGC→CGA) | yidP | UTRA domain‑containing GntR family putative transcriptional regulator |
| * | NC_000913 | 2,248,431 | 0 | A | C | 41.5% | 62.2 / 12.8 | 43 | G34G (GGT→GGG) | lysP | lysine transporter |
| * | NC_000913 | 289,263 | 0 | A | G | 41.0% | 60.7 / 12.0 | 41 | intergenic (‑101/+38) | yagI/argF | CP4‑6 prophage; putative DNA‑binding transcriptional regulator/ornithine carbamoyltransferase 2, chain F; CP4‑6 prophage |
| * | NC_000913 | 1,478,311 | 0 | A | G | 41.0% | 43.8 / 14.9 | 41 | E29G (GAG→GGG) | ynbB | putative CDP‑diglyceride synthase |
| * | NC_000913 | 289,275 | 0 | A | G | 40.9% | 53.5 / 18.0 | 44 | intergenic (‑113/+26) | yagI/argF | CP4‑6 prophage; putative DNA‑binding transcriptional regulator/ornithine carbamoyltransferase 2, chain F; CP4‑6 prophage |
| * | NC_000913 | 436,500 | 0 | G | T | 40.9% | 67.5 / 17.6 | 44 | P289P (CCG→CCT) | thiL | thiamine monophosphate kinase |
| * | NC_000913 | 357,875 | 0 | A | T | 40.6% | 32.1 / 11.8 | 32 | N272K (AAT→AAA) | cynR | transcriptional activator of cyn operon; autorepressor |