mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.29.0 revision 8f9c342918e4
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 417 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,434,882 | 0 | T | G | 52.5% | 68.9 / 99.6 | 62 | Y252S (TAC→TCC) | truA | tRNA pseudouridine(38‑40) synthase |
| * | NC_000913 | 2,326,450 | 0 | T | G | 52.4% | 81.0 / 103.7 | 63 | G114G (GGT→GGG) | atoB | acetyl‑CoA acetyltransferase |
| * | NC_000913 | 3,492,834 | 0 | T | G | 48.4% | 74.4 / 17.4 | 64 | G89G (GGT→GGG) | tsgA | putative transporter |
| * | NC_000913 | 345,328 | 0 | C | A | 48.3% | 77.0 / 33.6 | 58 | intergenic (+337/‑76) | yahL/yahM | uncharacterized protein/uncharacterized protein |
| * | NC_000913 | 3,206,435 | 0 | C | T | 47.5% | 51.4 / 40.3 | 61 | intergenic (‑179/‑28) | ttdR/ttdA | transcriptional activator of ttdABT/L‑tartrate dehydratase, alpha subunit |
| * | NC_000913 | 925,900 | 0 | A | G | 47.5% | 86.2 / 16.6 | 60 | noncoding (72/88 nt) | serW | tRNA‑Ser |
| * | NC_000913 | 2,394,162 | 0 | A | C | 46.2% | 94.2 / 15.5 | 65 | G295G (GGT→GGG) | nuoL | NADH:ubiquinone oxidoreductase, membrane subunit L |
| * | NC_000913 | 1,825,061 | 0 | G | A | 45.6% | 65.6 / 28.2 | 57 | intergenic (‑124/+79) | ves/spy | cold‑ and stress‑inducible protein/periplasmic ATP‑independent protein refolding chaperone, stress‑induced |
| * | NC_000913 | 1,825,056 | 0 | G | A | 45.1% | 59.2 / 26.1 | 51 | intergenic (‑119/+84) | ves/spy | cold‑ and stress‑inducible protein/periplasmic ATP‑independent protein refolding chaperone, stress‑induced |
| * | NC_000913 | 1,222,233 | 0 | G | A | 44.9% | 51.1 / 27.2 | 49 | pseudogene (60/75 nt) | ycgH | pseudogene; putative ATP‑binding component of a transport system |
| * | NC_000913 | 266,349 | 0 | C | A | 44.4% | 99.5 / 31.4 | 55 | V69F (GTT→TTT) | yafY | lipoprotein, inner membrane; degP regulator; CP4‑6 prophage |
| * | NC_000913 | 2,151,589 | 0 | A | T | 44.4% | 69.2 / 27.9 | 54 | L135F (TTA→TTT) | yegJ | uncharacterized protein |
| * | NC_000913 | 941,713 | 0 | T | G | 44.1% | 88.9 / 22.8 | 59 | V252G (GTG→GGG) | dmsA | dimethyl sulfoxide reductase, anaerobic, subunit A |
| * | NC_000913 | 3,285,853 | 0 | G | T | 44.0% | 26.6 / 13.9 | 25 | A126S (GCC→TCC) | agaD | N‑acetylgalactosamine‑specific enzyme IID component of PTS |
| * | NC_000913 | 29,496 | 0 | T | A | 43.8% | 93.1 / 43.9 | 73 | intergenic (+301/‑155) | dapB/carA | dihydrodipicolinate reductase/carbamoyl phosphate synthetase small subunit, glutamine amidotransferase |
| * | NC_000913 | 3,556,207 | 0 | T | C | 43.8% | 62.5 / 13.9 | 48 | S215G (AGT→GGT) | rtcA | RNA 3'‑terminal phosphate cyclase |
| * | NC_000913 | 2,984,718 | 0 | G | C | 43.5% | 66.6 / 19.5 | 47 | P292R (CCG→CGG) | yqeF | short chain acyltransferase |
| * | NC_000913 | 357,890 | 0 | C | A | 42.9% | 49.4 / 21.2 | 42 | L267F (TTG→TTT) | cynR | transcriptional activator of cyn operon; autorepressor |
| * | NC_000913 | 4,571,368 | 0 | A | T | 42.9% | 80.8 / 27.6 | 56 | R69R (CGT→CGA) | yjiR | putative DNA‑binding transcriptional regulator/putative aminotransferase |
| * | NC_000913 | 4,234,243 | 0 | A | C | 42.6% | 78.0 / 28.4 | 61 | P162P (CCA→CCC) | pgi | glucosephosphate isomerase |