mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.29.0 revision 8f9c342918e4
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 704 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 357,890 | 0 | C | A | 51.3% | 25.4 / 58.8 | 37 | L267F (TTG→TTT) | cynR | transcriptional activator of cyn operon; autorepressor |
| * | NC_000913 | 4,604,344 | 0 | C | T | 50.0% | 42.5 / 42.6 | 64 | S62F (TCT→TTT) | bglJ | bgl operon transcriptional activator |
| * | NC_000913 | 354,288 | 0 | T | G | 49.3% | 90.7 / 39.3 | 75 | V528G (GTG→GGG) | prpE | propionate‑‑CoA ligase |
| * | NC_000913 | 1,376,505 | 0 | A | C | 48.5% | 86.9 / 29.0 | 68 | T158P (ACC→CCC) | ycjR | putative TIM alpha/beta barrel enzyme |
| * | NC_000913 | 1,174,610 | 0 | A | C | 48.0% | 111.0 / 19.0 | 77 | W186G (TGG→GGG) | ycfT | inner membrane protein |
| * | NC_000913 | 3,443,277 | 0 | A | C | 46.6% | 102.6 / 28.4 | 74 | V274G (GTA→GGA) | secY | preprotein translocase membrane subunit |
| * | NC_000913 | 1,174,605 | 0 | T | C | 45.7% | 114.4 / 20.4 | 81 | G187G (GGA→GGG) | ycfT | inner membrane protein |
| * | NC_000913 | 2,434,882 | 0 | T | G | 45.3% | 109.8 / 29.5 | 75 | Y252S (TAC→TCC) | truA | tRNA pseudouridine(38‑40) synthase |
| * | NC_000913 | 4,580,640 | 0 | C | T | 45.3% | 71.1 / 20.8 | 54 | E275K (GAA→AAA) | hsdS | specificity determinant for hsdM and hsdR |
| * | NC_000913 | 1,245,234 | 0 | G | T | 45.2% | 85.0 / 50.0 | 73 | L25F (TTG→TTT) | ycgY | uncharacterized protein |
| * | NC_000913 | 345,328 | 0 | C | A | 44.7% | 101.1 / 51.0 | 76 | intergenic (+337/‑76) | yahL/yahM | uncharacterized protein/uncharacterized protein |
| * | NC_000913 | 3,585,086 | 0 | A | C | 44.4% | 126.7 / 17.2 | 81 | Y580D (TAC→GAC) | ggt | gamma‑glutamyltranspeptidase |
| * | NC_000913 | 1,312,213 | 0 | G | A | 44.1% | 72.5 / 42.1 | 69 | L12F (CTT→TTT) | yciA | acyl‑CoA esterase |
| * | NC_000913 | 2,483,254 | 0 | G | A | 43.2% | 50.2 / 19.9 | 45 | S29L (TCA→TTA) | emrK | multidrug resistance efflux pump membrane fusion protein |
| * | NC_000913 | 1,679,304 | 0 | A | C | 43.1% | 99.5 / 20.8 | 72 | Y293S (TAC→TCC) | ydgH | DUF1471 family periplasmic protein |
| * | NC_000913 | 2,001,918 | 0 | A | C | 42.7% | 140.2 / 15.8 | 75 | intergenic (‑129/+192) | fliA/fliC | RNA polymerase, sigma 28 (sigma F) factor/flagellar filament structural protein (flagellin) |
| * | NC_000913 | 3,177,748 | 0 | C | A | 42.5% | 84.3 / 40.8 | 73 | E55* (GAG→TAG) | nudF | ADP‑ribose pyrophosphatase |
| * | NC_000913 | 1,911,754 | 0 | T | G | 42.1% | 125.9 / 13.1 | 76 | T275P (ACC→CCC) | htpX | putative endopeptidase |
| * | NC_000913 | 646,747 | 0 | T | G | 41.9% | 129.5 / 15.2 | 74 | T255P (ACC→CCC) | citG | 2‑(5''‑triphosphoribosyl)‑3'‑dephosphocoenzyme‑A synthase |
| * | NC_000913 | 3,995,457 | 0 | T | G | 41.8% | 112.4 / 15.7 | 68 | G232G (GGT→GGG) | dapF | diaminopimelate epimerase |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 4542682 = | 44 (0.540) | 6 (0.080) | 6/280 | 13.0 | 9.5% | intergenic (+49/‑433) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913 | 4542996 = | 73 (0.950) | intergenic (+363/‑119) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||