mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,060 | 0 | C | T | 32.8% | 65.0 / 57.7 | 58 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Marginal new junction evidence (lowest skew 10 of 66 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 359236 | 33 (0.790) | 8 (0.210) | 8/252 | 2.7 | 18.9% | coding (438/660 nt) | cynT | carbonic anhydrase |
| ? | NC_000913 | = 359364 | 39 (1.050) | coding (566/660 nt) | cynT | carbonic anhydrase | |||||
| * | ? | NC_000913 | 1207790 = | 27 (0.650) | 6 (0.160) | 6/250 | 3.2 | 23.6% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | 1209619 = | 15 (0.410) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | 315401 = | NA (NA) | 6 (0.160) | 6/256 | 3.3 | NA | noncoding (173/1255 nt) | IS3 | repeat region |
| ? | NC_000913 | 315627 = | NA (NA) | noncoding (399/1255 nt) | IS3 | repeat region | |||||
| * | ? | NC_000913 | 1218916 = | 28 (0.670) | 6 (0.160) | 5/254 | 3.6 | 22.6% | intergenic (+65/‑67) | ycgG/ymgF | putative membrane‑anchored cyclic‑di‑GMP phosphodiesterase/inner membrane division septum protein |
| ? | NC_000913 | 1218997 = | 16 (0.430) | coding (15/219 nt) | ymgF | inner membrane division septum protein | |||||
| * | ? | NC_000913 | = 2478355 | 34 (0.820) | 5 (0.130) | 5/260 | 3.7 | 12.9% | coding (509/1338 nt) | dsdX | D‑serine transporter |
| ? | NC_000913 | = 2478636 | 36 (0.940) | coding (790/1338 nt) | dsdX | D‑serine transporter | |||||
| * | ? | NC_000913 | 762116 = | 29 (0.700) | 4 (0.110) | 4/254 | 4.0 | 11.6% | coding (595/1218 nt) | sucB | dihydrolipoyltranssuccinase |
| ? | NC_000913 | 762340 = | 35 (0.930) | coding (819/1218 nt) | sucB | dihydrolipoyltranssuccinase | |||||
| * | ? | NC_000913 | 4215770 = | 66 (1.580) | 4 (0.100) | 4/262 | 4.1 | 6.9% | coding (293/1602 nt) | aceB | malate synthase A |
| ? | NC_000913 | 4216059 = | 46 (1.190) | coding (582/1602 nt) | aceB | malate synthase A | |||||
| * | ? | NC_000913 | 3129568 = | 37 (0.890) | 5 (0.130) | 4/260 | 4.1 | 11.9% | pseudogene (576/1101 nt) | yghO | pseudogene, IS‑interrupted |
| ? | NC_000913 | 3129653 = | 40 (1.040) | pseudogene (491/1101 nt) | yghO | pseudogene, IS‑interrupted | |||||
| * | ? | NC_000913 | 3068137 = | 54 (1.300) | 4 (0.100) | 4/260 | 4.1 | 7.9% | intergenic (‑57/+36) | yggE/argO | oxidative stress defense protein/arginine transporter |
| ? | NC_000913 | 3068352 = | 43 (1.120) | coding (457/636 nt) | argO | arginine transporter | |||||
| * | ? | NC_000913 | = 2890568 | 44 (1.060) | 4 (0.100) | 4/258 | 4.1 | 7.3% | coding (1331/1800 nt) | cysJ | sulfite reductase, alpha subunit, flavoprotein |
| ? | NC_000913 | = 2890708 | 62 (1.630) | coding (1191/1800 nt) | cysJ | sulfite reductase, alpha subunit, flavoprotein | |||||