mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913_3_hsa_tpiA | 1,544,021 | 1 | . | A | 72.6% | 152.0 / 56.8 | 62 | coding (40/1389 nt) | narU | nitrate/nitrite transporter |
| * | NC_000913_3_hsa_tpiA | 4,296,042 | 0 | C | T | 27.9% | 143.6 / 64.1 | 105 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Marginal new junction evidence (lowest skew 10 of 154 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_hsa_tpiA | = 3270206 | 74 (1.030) | 5 (0.120) +57 bp |
3/172 | 7.7 | 9.7% | intergenic (+604/+10) | yhaC/rnpB | pentapetide repeats‑related protein/RNase P, M1 RNA component |
| ? | NC_000913_3_hsa_tpiA | = 3270238 | 81 (1.130) | noncoding (355/377 nt) | rnpB | RNase P, M1 RNA component | |||||
| * | ? | NC_000913_3_hsa_tpiA | = 3270093 | 68 (0.950) | 5 (0.120) +57 bp |
3/172 | 7.7 | 10.1% | intergenic (+491/+123) | yhaC/rnpB | pentapetide repeats‑related protein/RNase P, M1 RNA component |
| ? | NC_000913_3_hsa_tpiA | = 3270238 | 81 (1.130) | noncoding (355/377 nt) | rnpB | RNase P, M1 RNA component | |||||
| * | ? | NC_000913_3_hsa_tpiA | 3587430 = | 81 (1.130) | 9 (0.140) | 7/266 | 8.3 | 10.6% | coding (684/744 nt) | ugpQ | glycerophosphodiester phosphodiesterase, cytosolic |
| ? | NC_000913_3_hsa_tpiA | 3587464 = | 77 (1.160) | coding (650/744 nt) | ugpQ | glycerophosphodiester phosphodiesterase, cytosolic | |||||
| * | ? | NC_000913_3_hsa_tpiA | 127595 = | 51 (0.710) | 6 (0.090) | 6/270 | 8.9 | 10.7% | intergenic (+8/‑317) | aceF/lpd | pyruvate dehydrogenase, dihydrolipoyltransacetylase component E2/dihydrolipoyl dehydrogenase; E3 component of pyruvate and 2‑oxoglutarate dehydrogenases complexes; glycine cleavage system L protein; dihydrolipoamide dehydrogenase |
| ? | NC_000913_3_hsa_tpiA | 127615 = | 52 (0.770) | intergenic (+28/‑297) | aceF/lpd | pyruvate dehydrogenase, dihydrolipoyltransacetylase component E2/dihydrolipoyl dehydrogenase; E3 component of pyruvate and 2‑oxoglutarate dehydrogenases complexes; glycine cleavage system L protein; dihydrolipoamide dehydrogenase | |||||
| * | ? | NC_000913_3_hsa_tpiA | = 3950450 | 65 (0.910) | 6 (0.090) | 6/272 | 9.0 | 8.9% | intergenic (+30/‑57) | ilvL/ilvX | ilvG operon leader peptide/uncharacterized protein |
| ? | NC_000913_3_hsa_tpiA | = 3950462 | 61 (0.890) | intergenic (+42/‑45) | ilvL/ilvX | ilvG operon leader peptide/uncharacterized protein | |||||
| * | ? | NC_000913_3_hsa_tpiA | = 274419 | NA (NA) | 6 (0.090) | 6/276 | 9.1 | NA | coding (699/1017 nt) | insH1 | IS5 transposase and trans‑activator |
| ? | NC_000913_3_hsa_tpiA | = 274423 | NA (NA) | coding (695/1017 nt) | insH1 | IS5 transposase and trans‑activator | |||||
| * | ? | NC_000913_3_hsa_tpiA | 2856425 = | NA (NA) | 7 (0.110) | 5/266 | 9.4 | NA | intergenic (+9/+28) | fhlA/ygbA | formate hydrogenlyase transcriptional activator/uncharacterized protein |
| ? | NC_000913_3_hsa_tpiA | 2856451 = | NA (NA) | intergenic (+35/+2) | fhlA/ygbA | formate hydrogenlyase transcriptional activator/uncharacterized protein | |||||
| * | ? | NC_000913_3_hsa_tpiA | 259015 = | NA (NA) | 5 (0.070) | 5/268 | 9.4 | NA | intergenic (+9/+30) | crl/phoE | pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator;regulator; Surface structures; transcriptional regulator of cryptic csgA gene for curli surface fibers/outer membrane phosphoporin protein E |
| ? | NC_000913_3_hsa_tpiA | 259038 = | NA (NA) | intergenic (+32/+7) | crl/phoE | pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator;regulator; Surface structures; transcriptional regulator of cryptic csgA gene for curli surface fibers/outer membrane phosphoporin protein E | |||||
| * | ? | NC_000913_3_hsa_tpiA | = 2691583 | 68 (0.950) | 5 (0.070) | 5/270 | 9.5 | 7.4% | intergenic (‑243/+73) | glmY/purL | sRNA activator of glmS mRNA, glmZ processing antagonist/phosphoribosylformyl‑glycineamide synthetase |
| ? | NC_000913_3_hsa_tpiA | = 2691589 | 61 (0.900) | intergenic (‑249/+67) | glmY/purL | sRNA activator of glmS mRNA, glmZ processing antagonist/phosphoribosylformyl‑glycineamide synthetase | |||||
| * | ? | NC_000913_3_hsa_tpiA | = 3944978 | NA (NA) | 6 (0.090) | 5/274 | 9.6 | 17.8% | noncoding (1275/2904 nt) | rrlC | 23S ribosomal RNA of rrnC operon |
| ? | NC_000913_3_hsa_tpiA | = 4038811 | 29 (0.400) | noncoding (1293/2905 nt) | rrlA | 23S ribosomal RNA of rrnA operon | |||||