mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 25 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_hsa_tpiA | = 671558 | 36 (1.040) | 5 (0.160) | 5/262 | 3.8 | 13.0% | coding (48/1032 nt) | holA | DNA polymerase III, delta subunit |
| ? | NC_000913_3_hsa_tpiA | = 671568 | 34 (1.070) | coding (38/1032 nt) | holA | DNA polymerase III, delta subunit | |||||
| * | ? | NC_000913_3_hsa_tpiA | 2434769 = | 43 (1.250) | 4 (0.130) | 4/260 | 4.2 | 9.3% | intergenic (‑28/+55) | dedA/truA | DedA family inner membrane protein/tRNA pseudouridine(38‑40) synthase |
| ? | NC_000913_3_hsa_tpiA | 2434804 = | 39 (1.240) | intergenic (‑63/+20) | dedA/truA | DedA family inner membrane protein/tRNA pseudouridine(38‑40) synthase | |||||
| * | ? | NC_000913_3_hsa_tpiA | = 987559 | 22 (0.640) | 4 (0.130) | 4/262 | 4.2 | 17.7% | intergenic (‑577/+26) | ompF/asnS | outer membrane porin 1a (Ia;b;F)/asparaginyl tRNA synthetase |
| ? | NC_000913_3_hsa_tpiA | = 987561 | 17 (0.530) | intergenic (‑579/+24) | ompF/asnS | outer membrane porin 1a (Ia;b;F)/asparaginyl tRNA synthetase | |||||
| * | ? | NC_000913_3_hsa_tpiA | = 4542672 | 12 (0.350) | 5 (0.150) | 4/266 | 4.3 | 20.3% | intergenic (+57/‑425) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913_3_hsa_tpiA | = 4542968 | 28 (0.870) | intergenic (+353/‑129) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913_3_hsa_tpiA | 4542664 = | 12 (0.350) | 4 (0.120) | 4/266 | 4.3 | 16.9% | intergenic (+49/‑433) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913_3_hsa_tpiA | 4542978 = | 28 (0.870) | intergenic (+363/‑119) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913_3_hsa_tpiA | 4347349 = | 28 (0.810) | 4 (0.120) | 4/266 | 4.3 | 12.7% | intergenic (‑41/+37) | fumB/dcuB | anaerobic class I fumarate hydratase (fumarase B)/C4‑dicarboxylate transporter, anaerobic; DcuS co‑sensor |
| ? | NC_000913_3_hsa_tpiA | 4347377 = | 29 (0.900) | intergenic (‑69/+9) | fumB/dcuB | anaerobic class I fumarate hydratase (fumarase B)/C4‑dicarboxylate transporter, anaerobic; DcuS co‑sensor | |||||
| * | ? | NC_000913_3_hsa_tpiA | = 3943635 | NA (NA) | 4 (0.120) | 4/270 | 4.3 | 45.7% | intergenic (+125/‑69) | gltU/rrlC | tRNA‑Glu/23S ribosomal RNA of rrnC operon |
| ? | NC_000913_3_hsa_tpiA | = 4037446 | 5 (0.140) | intergenic (+111/‑73) | alaT/rrlA | tRNA‑Ala/23S ribosomal RNA of rrnA operon | |||||
| * | ? | NC_000913_3_hsa_tpiA | 3426836 = | NA (NA) | 4 (0.120) | 4/270 | 4.3 | NA | intergenic (‑53/+122) | rrlD/alaU | 23S ribosomal RNA of rrnD operon/tRNA‑Ala |
| ? | NC_000913_3_hsa_tpiA | 3426854 = | NA (NA) | intergenic (‑71/+104) | rrlD/alaU | 23S ribosomal RNA of rrnD operon/tRNA‑Ala | |||||
| * | ? | NC_000913_3_hsa_tpiA | = 3180038 | 38 (1.100) | 4 (0.120) | 4/270 | 4.3 | 10.1% | coding (295/672 nt) | ygiB | DUF1190 family protein |
| ? | NC_000913_3_hsa_tpiA | = 3180052 | 35 (1.070) | coding (309/672 nt) | ygiB | DUF1190 family protein | |||||
| * | ? | NC_000913_3_hsa_tpiA | = 3070082 | NA (NA) | 4 (0.120) | 4/270 | 4.3 | NA | noncoding (80/98 nt) | RIP213 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP213 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | NC_000913_3_hsa_tpiA | = 3070093 | NA (NA) | noncoding (91/98 nt) | RIP213 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP213 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||