mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913_3_hsa_tpiA | 4,296,042 | 0 | C | T | 30.2% | 75.7 / 39.0 | 65 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Marginal new junction evidence (lowest skew 10 of 112 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_hsa_tpiA | 1207790 = | 31 (0.740) | 8 (0.210) | 8/254 | 3.6 | 20.1% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913_3_hsa_tpiA | 1209619 = | 36 (0.960) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913_3_hsa_tpiA | = 225281 | NA (NA) | 8 (0.200) | 7/276 | 4.3 | NA | noncoding (1511/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon |
| ? | NC_000913_3_hsa_tpiA | = 225293 | NA (NA) | noncoding (1523/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon | |||||
| * | ? | NC_000913_3_hsa_tpiA | = 781277 | 53 (1.260) | 4 (0.130) +39 bp |
4/208 | 4.4 | 9.0% | intergenic (+55/‑92) | lysY/lysZ | tRNA‑Lys/tRNA‑Lys |
| ? | NC_000913_3_hsa_tpiA | = 2521328 | 58 (1.380) | noncoding (76/76 nt) | lysV | tRNA‑Lys | |||||
| * | ? | NC_000913_3_hsa_tpiA | = 781277 | 53 (1.260) | 4 (0.130) +39 bp |
4/208 | 4.4 | 10.1% | intergenic (+55/‑92) | lysY/lysZ | tRNA‑Lys/tRNA‑Lys |
| ? | NC_000913_3_hsa_tpiA | = 781652 | 45 (1.070) | noncoding (76/76 nt) | lysQ | tRNA‑Lys | |||||
| * | ? | NC_000913_3_hsa_tpiA | = 780629 | 32 (0.760) | 4 (0.130) +39 bp |
4/208 | 4.4 | 11.5% | noncoding (76/76 nt) | lysT | tRNA‑Lys |
| ? | NC_000913_3_hsa_tpiA | = 781277 | 53 (1.260) | intergenic (+55/‑92) | lysY/lysZ | tRNA‑Lys/tRNA‑Lys | |||||
| * | ? | NC_000913_3_hsa_tpiA | = 1097463 | 22 (0.520) | 8 (0.200) | 6/270 | 4.6 | 30.3% | intergenic (+634/+102) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| ? | NC_000913_3_hsa_tpiA | = 1097467 | 16 (0.400) | intergenic (+638/+98) | ycdU/serX | putative inner membrane protein/tRNA‑Ser | |||||
| * | ? | NC_000913_3_hsa_tpiA | = 1097294 | 16 (0.380) | 8 (0.200) | 6/270 | 4.6 | 30.7% | intergenic (+465/+271) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| ? | NC_000913_3_hsa_tpiA | = 1097455 | 21 (0.530) | intergenic (+626/+110) | ycdU/serX | putative inner membrane protein/tRNA‑Ser | |||||
| * | ? | NC_000913_3_hsa_tpiA | = 1097113 | 40 (0.950) | 8 (0.200) | 6/270 | 4.6 | 21.4% | intergenic (+284/+452) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| ? | NC_000913_3_hsa_tpiA | = 1097455 | 21 (0.530) | intergenic (+626/+110) | ycdU/serX | putative inner membrane protein/tRNA‑Ser | |||||
| * | ? | NC_000913_3_hsa_tpiA | 2071331 = | 49 (1.160) | 5 (0.130) | 5/266 | 5.0 | 10.6% | noncoding (15/195 nt) | isrC | novel sRNA, CP4‑44; putative prophage remnant |
| ? | NC_000913_3_hsa_tpiA | 2071358 = | 39 (0.990) | noncoding (42/195 nt) | isrC | novel sRNA, CP4‑44; putative prophage remnant | |||||
| * | ? | NC_000913_3_hsa_tpiA | = 4606601 | NA (NA) | 5 (0.120) | 5/272 | 5.1 | NA | noncoding (62/92 nt) | REP351 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP351 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | NC_000913_3_hsa_tpiA | = 4606631 | NA (NA) | noncoding (92/92 nt) | REP351 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP351 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||