mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913_3_pae_tpiA | 349,692 | 0 | A | G | 38.1% | 16.2 / 41.4 | 42 | intergenic (+120/‑320) | prpB/prpC | 2‑methylisocitrate lyase/2‑methylcitrate synthase |
| * | NC_000913_3_pae_tpiA | 4,295,976 | 0 | C | T | 29.7% | 309.6 / 158.2 | 202 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913_3_pae_tpiA | 4,352,659 | 0 | T | G | 28.9% | 194.3 / 132.5 | 137 | S54A (TCC→GCC) | ghoS | antitoxin of GhoTS toxin‑antitoxin pair; endonuclease for ghoT mRNA |
| Marginal new junction evidence (lowest skew 10 of 431 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_pae_tpiA | 4385264 = | 144 (1.010) | 18 (0.140) | 17/244 | 13.0 | 11.9% | intergenic (+7/‑45) | yjeM/yjeN | putative transporter/uncharacterized protein |
| ? | NC_000913_3_pae_tpiA | 4385291 = | 134 (1.020) | intergenic (+34/‑18) | yjeM/yjeN | putative transporter/uncharacterized protein | |||||
| * | ? | NC_000913_3_pae_tpiA | = 4549781 | NA (NA) | 19 (0.140) | 17/256 | 13.6 | 11.2% | intergenic (+155/+88) | fimH/gntP | minor component of type 1 fimbriae/fructuronate transporter |
| ? | NC_000913_3_pae_tpiA | = 4549794 | 151 (1.100) | intergenic (+168/+75) | fimH/gntP | minor component of type 1 fimbriae/fructuronate transporter | |||||
| * | ? | NC_000913_3_pae_tpiA | = 1613275 | 90 (0.630) | 18 (0.130) | 16/248 | 13.6 | 17.8% | intergenic (‑24/+40) | glsB/sad | glutaminase 2/succinate semialdehyde dehydrogenase, NAD(P)+‑dependent |
| ? | NC_000913_3_pae_tpiA | = 1613279 | 82 (0.610) | intergenic (‑28/+36) | glsB/sad | glutaminase 2/succinate semialdehyde dehydrogenase, NAD(P)+‑dependent | |||||
| * | ? | NC_000913_3_pae_tpiA | = 3946053 | 3 (0.020) | 20 (0.140) | 16/258 | 14.1 | 87.3% | noncoding (2350/2904 nt) | rrlC | 23S ribosomal RNA of rrnC operon |
| ? | NC_000913_3_pae_tpiA | = 3946069 | NA (NA) | noncoding (2366/2904 nt) | rrlC | 23S ribosomal RNA of rrnC operon | |||||
| * | ? | NC_000913_3_pae_tpiA | = 274347 | NA (NA) | 22 (0.160) | 16/258 | 14.1 | NA | coding (771/1017 nt) | insH1 | IS5 transposase and trans‑activator |
| ? | NC_000913_3_pae_tpiA | = 274354 | NA (NA) | coding (764/1017 nt) | insH1 | IS5 transposase and trans‑activator | |||||
| * | ? | NC_000913_3_pae_tpiA | 2418609 = | 141 (0.980) | 14 (0.120) | 12/222 | 14.2 | 10.8% | intergenic (+8/+25) | yfcC/yfcD | putative inner membrane transporter; C4‑dicarboxylate anaerobic carrier family protein/putative NUDIX hydrolase |
| ? | NC_000913_3_pae_tpiA | 2418631 = | 115 (0.960) | intergenic (+30/+3) | yfcC/yfcD | putative inner membrane transporter; C4‑dicarboxylate anaerobic carrier family protein/putative NUDIX hydrolase | |||||
| * | ? | NC_000913_3_pae_tpiA | = 3944978 | NA (NA) | 18 (0.130) | 15/254 | 14.4 | 21.7% | noncoding (1275/2904 nt) | rrlC | 23S ribosomal RNA of rrnC operon |
| ? | NC_000913_3_pae_tpiA | = 4038811 | 68 (0.470) | noncoding (1293/2905 nt) | rrlA | 23S ribosomal RNA of rrnA operon | |||||
| * | ? | NC_000913_3_pae_tpiA | 850982 = | 171 (1.190) | 15 (0.110) | 14/244 | 14.4 | 8.6% | intergenic (+17/+32) | ompX/opgE | outer membrane protein X/OPG biosynthetic transmembrane phosphoethanolamine transferase |
| ? | NC_000913_3_pae_tpiA | 851010 = | 163 (1.240) | intergenic (+45/+4) | ompX/opgE | outer membrane protein X/OPG biosynthetic transmembrane phosphoethanolamine transferase | |||||
| * | ? | NC_000913_3_pae_tpiA | 183652 = | 132 (0.920) | 14 (0.110) | 14/246 | 14.5 | 10.7% | intergenic (+32/+57) | cdaR/yaeH | carbohydrate diacid regulon transcriptional regulator; autoregulator/UPF0325 family protein |
| ? | NC_000913_3_pae_tpiA | 183685 = | 112 (0.850) | intergenic (+65/+24) | cdaR/yaeH | carbohydrate diacid regulon transcriptional regulator; autoregulator/UPF0325 family protein | |||||
| * | ? | NC_000913_3_pae_tpiA | = 2066562 | 41 (0.290) | 20 (0.140) | 15/258 | 14.6 | 33.5% | coding (760/1017 nt) | insH1 | IS5 transposase and trans‑activator |
| ? | NC_000913_3_pae_tpiA | = 2102137 | NA (NA) | coding (775/1017 nt) | insH1 | IS5 transposase and trans‑activator | |||||