mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 25 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_vch_tpiA | = 1207805 | 43 (1.120) | 10 (0.290) | 10/252 | 2.5 | 19.0% | noncoding (11586/15193 nt) | cryptic prophage e14 | cryptic prophage e14 |
| ? | NC_000913_3_vch_tpiA | = 1209602 | 47 (1.380) | noncoding (13383/15193 nt) | cryptic prophage e14 | cryptic prophage e14 | |||||
| * | ? | NC_000913_3_vch_tpiA | 1207790 = | 38 (0.990) | 7 (0.210) | 7/252 | 3.4 | 14.8% | noncoding (11571/15193 nt) | cryptic prophage e14 | cryptic prophage e14 |
| ? | NC_000913_3_vch_tpiA | 1209619 = | 47 (1.380) | noncoding (13400/15193 nt) | cryptic prophage e14 | cryptic prophage e14 | |||||
| * | ? | NC_000913_3_vch_tpiA | = 225281 | NA (NA) | 9 (0.240) | 7/274 | 3.8 | NA | noncoding (225281/4641682 nt) | repeat_region | repeat region |
| ? | NC_000913_3_vch_tpiA | = 225293 | NA (NA) | noncoding (225293/4641682 nt) | repeat_region | repeat region | |||||
| * | ? | NC_000913_3_vch_tpiA | = 4542720 | 23 (0.600) | 6 (0.170) | 6/266 | 4.0 | 19.2% | noncoding (4542720/4641682 nt) | repeat_region | repeat region |
| ? | NC_000913_3_vch_tpiA | = 4543016 | 29 (0.810) | noncoding (4543016/4641682 nt) | repeat_region | repeat region | |||||
| * | ? | NC_000913_3_vch_tpiA | = 354733 | NA (NA) | 4 (0.110) | 4/270 | 5.0 | NA | noncoding (135/171 nt) | REP26 (repetitive extragenic palindromic) element; contains 4 REP sequences | REP26 (repetitive extragenic palindromic) element; contains 4 REP sequences |
| ? | NC_000913_3_vch_tpiA | = 354765 | NA (NA) | noncoding (167/171 nt) | REP26 (repetitive extragenic palindromic) element; contains 4 REP sequences | REP26 (repetitive extragenic palindromic) element; contains 4 REP sequences | |||||
| * | ? | NC_000913_3_vch_tpiA | = 2897751 | 30 (0.780) | 4 (0.110) | 4/276 | 5.1 | 12.5% | noncoding (2897751/4641682 nt) | repeat_region | repeat region |
| ? | NC_000913_3_vch_tpiA | = 2897791 | 27 (0.730) | noncoding (2897791/4641682 nt) | repeat_region | repeat region | |||||
| * | ? | NC_000913_3_vch_tpiA | 2790661 = | 25 (0.650) | 4 (0.110) | 4/276 | 5.1 | 14.0% | noncoding (2790661/4641682 nt) | repeat_region | repeat region |
| ? | NC_000913_3_vch_tpiA | 2790677 = | 25 (0.670) | noncoding (2790677/4641682 nt) | repeat_region | repeat region | |||||
| * | ? | NC_000913_3_vch_tpiA | 2569369 = | 46 (1.200) | 4 (0.110) | 4/276 | 5.1 | 8.6% | noncoding (2569369/4641682 nt) | repeat_region | repeat region |
| ? | NC_000913_3_vch_tpiA | 2569434 = | 40 (1.080) | noncoding (2569434/4641682 nt) | repeat_region | repeat region | |||||
| * | ? | NC_000913_3_vch_tpiA | 1941271 = | 29 (0.760) | 3 (0.090) | 3/252 | 5.2 | 10.4% | noncoding (1941271/4641682 nt) | repeat_region | repeat region |
| ? | NC_000913_3_vch_tpiA | 1941287 = | 26 (0.770) | noncoding (1941287/4641682 nt) | repeat_region | repeat region | |||||
| * | ? | NC_000913_3_vch_tpiA | = 1552022 | 39 (1.020) | 3 (0.090) | 3/260 | 5.4 | 7.4% | noncoding (1552022/4641682 nt) | repeat_region | repeat region |
| ? | NC_000913_3_vch_tpiA | = 1552030 | 39 (1.110) | noncoding (1552030/4641682 nt) | repeat_region | repeat region | |||||