mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.31.0 revision 69e7c3c0fa11
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 20,023 | 2 bp→TA | intergenic (‑744/‑392) | JCVSYN2_00065 ← / → JCVSYN2_00070 | hypothetical protein/tetracycline resistance ribosomal protection protein Tet(M) |
| RA | 32,707 | A→T | I1067F (ATT→TTT) | JCVSYN2_00105 → | ABC transporter permease |
| RA | 165,218 | A→T | intergenic (+182/‑360) | JCVSYN2_00665 → / → JCVSYN2_00670 | tRNA N6‑adenosine(37)‑N6‑threonylcarbamoyltransferase complex dimerization subunit TsaB/tRNA‑Ser |
| RA | 165,222 | G→A | intergenic (+186/‑356) | JCVSYN2_00665 → / → JCVSYN2_00670 | tRNA N6‑adenosine(37)‑N6‑threonylcarbamoyltransferase complex dimerization subunit TsaB/tRNA‑Ser |
| RA | 281,616 | C→T | Q100* (CAA→TAA) | JCVSYN2_01185 → | DNA‑binding protein |
| RA | 420,157 | 2 bp→TT | intergenic (‑440/+402) | JCVSYN2_01895 ← / ← JCVSYN2_01900 | 30S ribosomal protein S10/tRNA‑Thr |
| RA | 420,163 | 2 bp→TT | intergenic (‑446/+396) | JCVSYN2_01895 ← / ← JCVSYN2_01900 | 30S ribosomal protein S10/tRNA‑Thr |
| RA | 478,738 | C→A | G301V (GGT→GTT) | JCVSYN2_02210 ← | DNA‑directed RNA polymerase subunit beta' |
| RA | 484,791 | T→A | intergenic (‑100/+71) | JCVSYN2_02220 ← / ← JCVSYN2_02225 | hypothetical protein/50S ribosomal protein L7/L12 |
| RA | 484,793 | A→T | intergenic (‑102/+69) | JCVSYN2_02220 ← / ← JCVSYN2_02225 | hypothetical protein/50S ribosomal protein L7/L12 |
| RA | 484,795 | A→T | intergenic (‑104/+67) | JCVSYN2_02220 ← / ← JCVSYN2_02225 | hypothetical protein/50S ribosomal protein L7/L12 |
| RA | 484,801 | A→G | intergenic (‑110/+61) | JCVSYN2_02220 ← / ← JCVSYN2_02225 | hypothetical protein/50S ribosomal protein L7/L12 |
| RA | 516,354 | A→T | intergenic (+185/+321) | JCVSYN2_02375 → / ← JCVSYN2_02380 | antitermination protein NusG/hypothetical protein |
| RA | 516,356 | G→A | intergenic (+187/+319) | JCVSYN2_02375 → / ← JCVSYN2_02380 | antitermination protein NusG/hypothetical protein |
| RA | 516,362 | T→C | intergenic (+193/+313) | JCVSYN2_02375 → / ← JCVSYN2_02380 | antitermination protein NusG/hypothetical protein |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP016816 | 117946 = | 3135 (0.710) | 1886 (0.510) | 206/212 | 1.2 | 40.1% | intergenic (+67/+792) | JCVSYN2_00460/JCVSYN2_00465 | ABC transporter substrate‑binding protein/spermidine/putrescine ABC transporter permease |
| ? | CP016816 | = 117942 | 2992 (0.800) | intergenic (+63/+796) | JCVSYN2_00460/JCVSYN2_00465 | ABC transporter substrate‑binding protein/spermidine/putrescine ABC transporter permease | |||||
| * | ? | CP016816 | 311153 = | 727 (0.160) | 2073 (0.570) | 203/208 | 1.0 | 77.5% | intergenic (‑76/‑238) | JCVSYN2_01300/JCVSYN2_01305 | hypothetical protein/30S ribosomal protein S21 |
| ? | CP016816 | = 311148 | 608 (0.170) | intergenic (‑71/‑243) | JCVSYN2_01300/JCVSYN2_01305 | hypothetical protein/30S ribosomal protein S21 | |||||