Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A16 F6 I1 R1
|
81 |
160.8 |
7353682 |
98.1% |
7213962 |
137.2 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| MC JC |
AE015451_phaM1 |
5,393,059 |
Δ5,661 bp |
|
[hsdR CDS (Type I restriction enzyme EcoAI R protein)]–[hsdS CDS (Type I restriction‑modification system_ S subunit)] |
[hsdR CDS (Type I restriction enzyme EcoAI R protein)], hsdM CDS (Type I restriction enzyme EcoEI M protein), [hsdS CDS (Type I restriction‑modification system_ S subunit)] |
|
| | | | seq id |
start |
end |
size |
←reads |
reads→ |
gene |
description |
|---|
| * |
* |
÷ |
AE015451_phaM1 |
5393059 |
5398719 |
5661 |
195 [0] |
[0] 203 |
[hsdR CDS (Type I restriction enzyme EcoAI R protein)]–[hsdS CDS (Type I restriction‑modification system_ S subunit)] |
[hsdR CDS (Type I restriction enzyme EcoAI R protein)],hsdM CDS (Type I restriction enzyme EcoEI M protein),[hsdS CDS (Type I restriction‑modification system_ S subunit)] |
|
| |
seq id |
position |
reads (cov) |
reads (cov) |
score |
skew |
freq |
annotation |
gene |
product |
| * |
? |
AE015451_phaM1 |
= 5393058 | 0 (0.000) | 195 (1.190) |
55/272 |
0.1 |
100% |
intergenic (‑386/‑1) |
PP_5710 CDS (exported protein of unknown function)/hsdR CDS (Type I restriction enzyme EcoAI R protein) |
–/– |
| ? | AE015451_phaM1 |
5398720 = |
0 (0.000) | intergenic (+1/‑10) |
hsdS CDS (Type I restriction‑modification system_ S subunit)/PP_5711 CDS (protein of unknown function) |
–/– |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
ACGCTGTCACTGTGCAGGAAATTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCAT‑‑‑A‑‑‑GCG‑‑‑CC‑‑‑GGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGCGCGCAGCTGAGCCGCCAGATCATCCAGCACCTTGCTAC > AE015451_phaM1/5555460‑5555759
|
ACGCTGTCACTGTGCAGGAAATTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCAT‑‑‑A‑‑‑GCGgccc < VH01111:79:AACJV3JHV:2:1606:9256:19250/153‑5 (MQ=60)
ACGCTGTCACTGTGCAGGAAATTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCAT‑‑‑A‑‑‑GCGgccc < VH01111:79:AACJV3JHV:2:1306:74924:24816/153‑5 (MQ=60)
ACGCTGTCACTGTGCAGGAAATTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCAT‑‑‑A‑‑‑GCGgccc < VH01111:79:AACJV3JHV:2:2414:66801:54104/153‑5 (MQ=60)
GTCACTGTGCAGGAAATTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTTTCGCGCAAGGGCCGCAT‑‑‑A‑‑‑GCGGGCCC‑‑‑GGCA > VH01111:79:AACJV3JHV:1:2113:15221:36762/1‑153 (MQ=60)
TGTGCAGGAAATTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCTGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCAT‑‑‑A‑‑‑GCGGCCCC‑‑‑GGCAATTTC < VH01111:79:AACJV3JHV:2:2407:45120:27467/153‑1 (MQ=60)
TGTGCAGGAAATTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCAT‑‑‑A‑‑‑GCGGCCCC‑‑‑GGCAATTTC < VH01111:79:AACJV3JHV:2:1604:53944:52267/153‑1 (MQ=60)
TGTGCAGGAAATTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCAT‑‑‑A‑‑‑GCGGCCCC‑‑‑GGCAATTTC < VH01111:79:AACJV3JHV:2:1604:59359:49428/153‑1 (MQ=60)
TGTGCAGGAAATTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCAT‑‑‑A‑‑‑GCGGCCCC‑‑‑GGCAATTTC < VH01111:79:AACJV3JHV:1:1501:39439:20197/153‑1 (MQ=60)
ATTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGCAAGGGGCGCAT‑‑‑A‑‑‑GCGgccccggccaattacgcctgtatg > VH01111:79:AACJV3JHV:1:1313:68808:43010/1‑129 (MQ=60)
AGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCAT‑‑‑A‑‑‑GCGGCCCC‑‑‑GGCAATTTCCGCGTGTATGCAAC < VH01111:79:AACJV3JHV:2:1502:40954:13987/153‑1 (MQ=60)
AGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCAT‑‑‑A‑‑‑GCGGCCCC‑‑‑GGCAATTTCCGCGTGTATGCAAC > VH01111:79:AACJV3JHV:1:2614:27017:3613/1‑153 (MQ=60)
GGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCAT‑‑‑A‑‑‑GCGGCCCC‑‑‑GGCAATTTCCGCGTGTATGCAACAAACC < VH01111:79:AACJV3JHV:2:2609:14198:16884/153‑1 (MQ=60)
GGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCAT‑‑‑A‑‑‑GCGGCCCC‑‑‑GGCAATTTCCGCGTGTATGCAACAAACC < VH01111:79:AACJV3JHV:2:2609:12115:15937/153‑1 (MQ=60)
TTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCAT‑‑‑A‑‑‑GCGGCCCC‑‑‑GGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGC < VH01111:79:AACJV3JHV:1:2307:49134:14820/153‑1 (MQ=60)
TTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCAT‑‑‑A‑‑‑GCGGCCCC‑‑‑GGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGC < VH01111:79:AACJV3JHV:1:1412:23117:45793/153‑1 (MQ=60)
TTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCAT‑‑‑A‑‑‑GCGGCCCC‑‑‑GGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGC < VH01111:79:AACJV3JHV:2:1404:33739:42328/153‑1 (MQ=60)
TTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCAT‑‑‑A‑‑‑GCGGCCCC‑‑‑GGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGC < VH01111:79:AACJV3JHV:1:1207:59321:19440/153‑1 (MQ=60)
AGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCAT‑‑‑A‑‑‑GCGGCCCC‑‑‑GGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAG < VH01111:79:AACJV3JHV:1:1208:67937:29341/153‑1 (MQ=60)
CGGGGGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCAT‑‑‑A‑‑‑GCGGCCCC‑‑‑GGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCC < VH01111:79:AACJV3JHV:2:1411:49077:48273/153‑1 (MQ=60)
CGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCAT‑‑‑A‑‑‑GCGGCCCC‑‑‑GGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCC < VH01111:79:AACJV3JHV:2:2505:37432:4824/153‑1 (MQ=60)
CGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCAT‑‑‑A‑‑‑GCGGCCCC‑‑‑GGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCC < VH01111:79:AACJV3JHV:1:1201:45782:25252/153‑1 (MQ=60)
CGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCAT‑‑‑A‑‑‑GCGGCCCC‑‑‑GGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCC < VH01111:79:AACJV3JHV:1:2410:69149:51756/153‑1 (MQ=60)
CGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCAT‑‑‑A‑‑‑GCGGCCCC‑‑‑GGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCC < VH01111:79:AACJV3JHV:1:2412:77348:30041/153‑1 (MQ=60)
CGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCAT‑‑‑A‑‑‑GCGGCCCC‑‑‑GGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCC < VH01111:79:AACJV3JHV:1:1201:45877:24589/153‑1 (MQ=60)
CGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCAT‑‑‑A‑‑‑GCGGCCCC‑‑‑GGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCC < VH01111:79:AACJV3JHV:1:2606:62654:51056/153‑1 (MQ=60)
CGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCAT‑‑‑A‑‑‑GCGGCCCC‑‑‑GGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCC < VH01111:79:AACJV3JHV:1:2607:59208:2325/153‑1 (MQ=60)
CGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCAT‑‑‑A‑‑‑GCGGCCCC‑‑‑GGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCC < VH01111:79:AACJV3JHV:1:1502:25351:18720/153‑1 (MQ=60)
CGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCAT‑‑‑A‑‑‑GCGGCCCC‑‑‑GGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCC < VH01111:79:AACJV3JHV:1:1502:25237:20348/153‑1 (MQ=60)
CGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCAT‑‑‑A‑‑‑GCGGCCCC‑‑‑GGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCC < VH01111:79:AACJV3JHV:2:1411:49872:48576/153‑1 (MQ=60)
CGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCAT‑‑‑A‑‑‑GCGGCCCC‑‑‑GGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCC < VH01111:79:AACJV3JHV:2:1106:67388:44392/153‑1 (MQ=60)
GGACATGAGCATCTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAATGGGCCGCAT‑‑‑AGGGGCC‑‑‑CC‑‑‑GGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCG < VH01111:79:AACJV3JHV:2:1609:69054:42726/153‑1 (MQ=60)
GGACATGAGCAACTCCTTTTGACATGTGTCGCCGACAGCATAGCAACACGGCTGAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATTGGG‑‑‑GCC‑‑‑CC‑‑‑GGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCG < VH01111:79:AACJV3JHV:2:1609:69774:42271/153‑1 (MQ=60)
CATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCAT‑‑‑A‑‑‑GCGGCCCC‑‑‑GGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGAC < VH01111:79:AACJV3JHV:1:1114:30899:45698/153‑1 (MQ=60)
GTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCAT‑‑‑A‑‑‑GCGGCCCC‑‑‑GGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGC < VH01111:79:AACJV3JHV:1:1501:41465:48235/153‑1 (MQ=60)
CATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCAT‑‑‑A‑‑‑GCGGCCCC‑‑‑GGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGC < VH01111:79:AACJV3JHV:1:1611:66895:10125/153‑1 (MQ=60)
CATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCAT‑‑‑A‑‑‑GCGGCCCC‑‑‑GGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGC < VH01111:79:AACJV3JHV:1:1205:13592:19496/153‑1 (MQ=60)
ACCCCGCTCAGTTGTGGGAGGGGCCTTGTGTCGCTAAAGGGCCGCAT‑‑‑A‑‑‑GCGGCCCC‑‑‑GGCAATTTCCGCGTGTATGCAACAAACGTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAAC < VH01111:79:AACJV3JHV:1:1404:38208:15748/153‑1 (MQ=60)
ACACGGCTCAGGTTTGGTAGCGGCCTTGTGTCGCGAAAGGCCCGAAT‑‑‑A‑‑‑GCG‑‑‑GCCGGGGCAATTTCCGCGTGTATGCAACAAACGTGGGGCTGCTATGCACCCCTTTGGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAAC < VH01111:79:AACJV3JHV:1:2204:13838:47686/153‑1 (MQ=60)
ACACCGCTCTGGTGTGGGAGCGGCGTTTTGACGCGAATGGGCCGCAT‑‑‑A‑‑‑GCGGCCCC‑‑‑GGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAAC < VH01111:79:AACJV3JHV:2:2502:27775:45414/153‑1 (MQ=60)
ACACCGCTCTGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCAT‑‑‑A‑‑‑GCGGCCCC‑‑‑GGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAAC < VH01111:79:AACJV3JHV:1:1311:19557:18834/153‑1 (MQ=60)
ACACCGCTCAGGTGTGGGTGCGGCCTTGTGTCGCGAAAGGGCGGCAT‑‑‑A‑‑‑GCGGCCCC‑‑‑GGAAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAAC < VH01111:79:AACJV3JHV:1:2613:34970:47610/153‑1 (MQ=60)
ACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCAT‑‑‑A‑‑‑GCGGCCCC‑‑‑GGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAAC < VH01111:79:AACJV3JHV:1:1512:74432:30079/153‑1 (MQ=60)
ACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCAT‑‑‑A‑‑‑GCGGCCCC‑‑‑GGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAAC < VH01111:79:AACJV3JHV:1:1404:38757:14517/153‑1 (MQ=60)
ACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCAT‑‑‑A‑‑‑GCGGCCCC‑‑‑GGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAAC < VH01111:79:AACJV3JHV:1:1404:32641:16884/153‑1 (MQ=60)
ACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCAT‑‑‑A‑‑‑GCGGCCCC‑‑‑GGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAAC < VH01111:79:AACJV3JHV:1:1311:23192:23453/153‑1 (MQ=60)
atttttataagagacaGGCCTTGTGTCGGTAAAGGGCCGAAT‑‑‑A‑‑‑GCGGCCCC‑‑‑GGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGTC < VH01111:79:AACJV3JHV:1:2208:25919:19023/137‑1 (MQ=60)
GCTGAGGTGTGGGTGCGGCCTTGTGTCGGGAAAGGGCCGCTT‑‑‑A‑‑‑GCGCCCCC‑‑‑GGCATTTTCCGCGTTAATGAAAAAAACGTGGGGCTGCTATCCACCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCC < VH01111:79:AACJV3JHV:2:2201:45214:50847/153‑1 (MQ=60)
GCTCAGGTGTGGGAGCGGCCTTTTGTCGCGAAAGGGCCGCAT‑‑‑A‑‑‑GCGGCCCC‑‑‑GGCAATTTCCGCGTTTATGAAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCC < VH01111:79:AACJV3JHV:2:1407:52164:18417/153‑1 (MQ=60)
GCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCAT‑‑‑A‑‑‑GCGGCCCC‑‑‑GGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCC < VH01111:79:AACJV3JHV:1:2309:20693:45565/153‑1 (MQ=60)
GCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCAT‑‑‑A‑‑‑GCGGCCCC‑‑‑GGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCC < VH01111:79:AACJV3JHV:1:2408:57295:32408/153‑1 (MQ=60)
GGTGTGGGAGCGGCGTTGTGTCGCGTATGGGCCGCAT‑‑‑AGGGGCC‑‑‑CC‑‑‑GGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGC < VH01111:79:AACJV3JHV:2:1408:33910:9822/153‑1 (MQ=60)
GGAGCGGCCTTGTGTCGCGAAAGGGCCGCAT‑‑‑A‑‑‑GCGGCCCC‑‑‑GGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGCGC < VH01111:79:AACJV3JHV:1:2312:44400:34434/153‑1 (MQ=60)
GGAGCGGCCTTGTGTCGCGAAAGGGCCGCAT‑‑‑A‑‑‑GCGGCCCC‑‑‑GGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGCGC < VH01111:79:AACJV3JHV:1:1409:53432:52627/153‑1 (MQ=60)
GGAGCGGCCTTGTGTCGCGAAAGGGCCGCAT‑‑‑A‑‑‑GCGGCCCC‑‑‑GGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGCGC < VH01111:79:AACJV3JHV:1:1214:39818:13041/153‑1 (MQ=60)
GGAGCGGCATTTTGTCGCTAAAGGGCGGAAT‑‑‑A‑‑‑GCGGCCCG‑‑‑GGAAATTGCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGAAACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGCGC < VH01111:79:AACJV3JHV:2:1304:26298:44884/153‑1 (MQ=60)
GGCCTTGTGTCGCGAAAGGGCCGCAT‑‑‑A‑‑‑GCGGCCCC‑‑‑GGCAATTTCCGCGTTTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGNGCGCAGC < VH01111:79:AACJV3JHV:1:2403:39969:29246/153‑1 (MQ=60)
GGCATTGTGTCGCTAAAGGCCCGAAT‑‑‑A‑‑‑GCGGCCCC‑‑‑GGAAATTTCCGGGTGTATGAAACAAACGTGGGGGTGCTTTGCAGCGCTTTCGCTACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGCGCGCAGC < VH01111:79:AACJV3JHV:2:2407:27169:14744/153‑1 (MQ=60)
GGCATTGTGTCGCAAAAGGGCCGCAT‑‑‑A‑‑‑GCGCCCCC‑‑‑GGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGCGCGCAGC < VH01111:79:AACJV3JHV:2:2504:59056:16827/153‑1 (MQ=60)
GAAAGGGCCGCAT‑‑‑A‑‑‑GCGGCCCC‑‑‑GGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGCGCGCAGCTGAGCCGCCAGAT < VH01111:79:AACJV3JHV:1:1506:61328:25801/153‑1 (MQ=60)
GAAAGGGCCGCAT‑‑‑A‑‑‑GCGGCCCC‑‑‑GGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGCGCGCAGCTGAGCCGCCAGAT < VH01111:79:AACJV3JHV:1:1506:59359:24665/153‑1 (MQ=60)
GAAAGGGCCGCAT‑‑‑A‑‑‑GCGGCCCC‑‑‑GGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGCGCGCAGCTGAGCCGCCAGAT < VH01111:79:AACJV3JHV:1:1506:58431:26918/153‑1 (MQ=60)
AGGGCCGCAT‑‑‑A‑‑‑GCGGCCCC‑‑‑GGCAATTACCGCGTGAATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGCGCGCAGCTGAGCCGCCAGATCAT < VH01111:79:AACJV3JHV:2:1302:18705:11999/153‑1 (MQ=60)
GGGCCGCAT‑‑‑A‑‑‑GCGGCCCC‑‑‑GGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGCGCGCAGCTGAGCCGCCAGATCATC > VH01111:79:AACJV3JHV:1:2201:57333:50014/1‑153 (MQ=60)
GCAT‑‑‑A‑‑‑GCGGCCCC‑‑‑GGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCctgtctcttatacacatctccgagcccacgaga > VH01111:79:AACJV3JHV:1:1504:46805:1360/1‑120 (MQ=60)
GCAT‑‑‑A‑‑‑GCGGCCCC‑‑‑GGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGCGCGCAGCTGAGCCGCCAGATCATCCAGCA > VH01111:79:AACJV3JHV:2:2609:24650:54482/1‑153 (MQ=60)
GCAT‑‑‑A‑‑‑GCGGCCCC‑‑‑GGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGCGCGCAGCTGAGCCGCCAGATCATCCAGCA > VH01111:79:AACJV3JHV:2:2609:24631:54501/1‑153 (MQ=60)
CAT‑‑‑A‑‑‑GCGGCCCC‑‑‑GGCAATTTCCGGGTTTATGCAACAACCCTGGGGCTGCAAGGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGCGCGCAGCTGAGCCGCCAGATCATCCAGCAC < VH01111:79:AACJV3JHV:2:2301:15808:37879/153‑1 (MQ=60)
CAT‑‑‑A‑‑‑GCGGCCCC‑‑‑GGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCGTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGCGCGCAGCTGAGCCGCCAGATCATCCAGCAC < VH01111:79:AACJV3JHV:1:1404:60306:14669/153‑1 (MQ=60)
CAT‑‑‑A‑‑‑GCGGCCCC‑‑‑GGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGCGCGCAGCTGAGCCGCCAGATCATCCAGCAC < VH01111:79:AACJV3JHV:2:2301:16451:38977/153‑1 (MQ=60)
CAT‑‑‑A‑‑‑GCGGCCCC‑‑‑GGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGCGCGCAGCTGAGCCGCCAGATCATCCAGCAC < VH01111:79:AACJV3JHV:2:1201:21337:37803/153‑1 (MQ=60)
CAT‑‑‑A‑‑‑GCGGCCCC‑‑‑GGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGCGCGCAGCTGAGCCGCCAGATCATCCAGCAC < VH01111:79:AACJV3JHV:1:2603:12986:15104/153‑1 (MQ=60)
CAT‑‑‑A‑‑‑GCGGCCCC‑‑‑GGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGCGCGCAGCTGAGCCGCCAGATCATCCAGCAC < VH01111:79:AACJV3JHV:1:2511:17796:20026/153‑1 (MQ=60)
CAT‑‑‑A‑‑‑GCGCCCCC‑‑‑GGCAATTTCCGCGTGTATGCAACAAACGTGGGGCTGCTTTGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGCGCGCAGCTGAGCCGCCAGATCATCCAGCAC < VH01111:79:AACJV3JHV:2:2102:33910:22772/153‑1 (MQ=60)
GCC‑‑‑CC‑‑‑GGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGCGCGCAGCTGAGCCGCCAGATCATCCAGCACCTTGCTA > VH01111:79:AACJV3JHV:2:1606:36921:7494/1‑153 (MQ=60)
GCC‑‑‑CC‑‑‑GGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGCGCGCAGCTGAGCCGCCAGATCATCCAGCACCTTGCTA > VH01111:79:AACJV3JHV:1:1409:62484:7494/1‑153 (MQ=60)
CC‑‑‑CC‑‑‑GGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGATATGCAGCCGTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGCGCGCAGCTGAGCCGCCAGATCATCCAGCACCTTGCTAC < VH01111:79:AACJV3JHV:2:2201:59283:34358/153‑1 (MQ=60)
CC‑‑‑CC‑‑‑GGAAATTTCCGCTTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTACGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGCGCGCAGCTGAGCCGCCAGATCATCCAGCACCTTGCTAC < VH01111:79:AACJV3JHV:2:1104:5639:26009/153‑1 (MQ=60)
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ACGCTGTCACTGTGCAGGAAATTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCAT‑‑‑A‑‑‑GCG‑‑‑CC‑‑‑GGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGCGCGCAGCTGAGCCGCCAGATCATCCAGCACCTTGCTAC > AE015451_phaM1/5555460‑5555759
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
