Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F14 I1 R1
|
58 |
76.7 |
3323998 |
98.6% |
3277462 |
146.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| JC |
NC_002947_CJ‑RC |
4,982,288 |
+GGC |
intergenic (‑24/+44) |
PP_4387 ← / ← flgE |
hypothetical protein/flagellar hook protein FlgE |
|
| |
seq id |
position |
reads (cov) |
reads (cov) |
score |
skew |
freq |
annotation |
gene |
product |
| * |
? |
NC_002947_CJ‑RC |
= 4982288 | 5 (0.060) | 51 (0.670)
+GGC |
47/286 |
0.8 |
91.2% |
intergenic (‑24/+44) |
PP_4387/flgE |
hypothetical protein/flagellar hook protein FlgE |
| ? | NC_002947_CJ‑RC |
4982289 = |
5 (0.060) | intergenic (‑25/+43) |
PP_4387/flgE |
hypothetical protein/flagellar hook protein FlgE |
GGGCCGAACACAGGTAGCGGCCGGTGACCAGGCTTTGCCATTGATAGAACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑GG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947_CJ‑RC/4982141‑4982288
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CGC‑TTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTGGCATTGGCCTGGTAGTTGCTCTGCGCCTTGATCAGGTTTACCAGCTCGC > NC_002947_CJ‑RC/4982289‑4982435
|||
GGGCCGAACACAGGTAGCGGCCGGTGACCAGGCTTTGCCATTGAAAGACCGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑GGG < 4:76617/149‑1
GGCCGAACACGGGTAGCGGCCGGTGACCAGGCTTTGCCATTGATAGAACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑GGGG > 2:365473/1‑149
CCGAACACAGGTAGCGGCCGGTGACCAGGCTTTGCCATTGATAGAACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑GGGGCC > 3:157482/1‑149
GTAGCGGCCGGTGACCAGGCTTTGCCATTGATAGAACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑GGGGCCGC‑TTTGCGGC < 6:205453/149‑1
GGCCGGTGACCAGGCTTTGCCATTGATAGAACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑GGGGCCGC‑TTTGCGGCCCCAA > 8:65881/1‑149
GCCGGTGACCAGGCTTTGCCATTGATAGAACGGGGAGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACATACACATTCTT‑TGGGCCCC‑TTTGCGGCCCCAAT > 2:313320/1‑149
CGGTGACCAGGCTTTGCCATTGATAGAACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑GGGGCCGC‑TTTGCGGCCCCAATT > 5:151804/1‑148
GTGACCAGGCTTTGCCATTGATAGAACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑GGGGCCGC‑TTTGCGGCCCCAATTACA < 4:245743/149‑1
ACCAGGCTTTGCCATTGATAGAACGGGGCGGGGGCAGCGGGGGCAGACAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑GGGGCCGC‑TTTGCGGCCCCAATTACAAA < 8:56557/148‑1
cctGGCTTTGCCATTGATAGAACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑GGGGCCGC‑TTTGCGGCCCCAATTACAAACA < 2:259038/146‑1
CAGGCTTTGCCATTGATAGACCGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑GGGGCCGC‑TTTGCGGCCCCAATTACAAACAC < 2:412491/149‑1
CAGGCTTTGCCATTGATAGAACGGGGCGGGGGCAGCGTGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑GGGGCCCC‑GTTTCGGCCCCAAATTCAAGCAa > 8:26262/1‑148
CCATTGATCGACCGGGGCGGGGGCTGCGGGGGCTGGCAGAACCAGCACCAGAAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑GGGGCCGC‑TTTGCGGCCCCAATTACAAACACCAAAGCCAA < 4:157482/149‑1
CCATTGATAGAACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑GGGGCCGC‑TTTGCGGCCCCAATTACAAACACCAAAGCCAA < 3:349822/149‑1
CCATTGATAGAACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑GGGGCCGC‑TTTGCGGCCCCAATTACAAACACCAAAGCCA < 6:249274/148‑1
ATTGATAGAACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑GGGGCCGC‑TTTGCGGTCCCAATTACAAACACCAAAGCCAATA > 8:231448/1‑149
ATTGATAGAACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑GGGGCCGC‑TTTGCGGCCCCAATTACAAACACCAAAGCCAATA < 1:365473/149‑1
TTGATAGAACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑GGGGGCGC‑GTGGGGGCCCCAAATTCAAAAACCAAAcacaaaa > 3:296242/1‑141
GATAGAACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑GGGGCCGC‑GTTGGGGCCACAATTACAAACACCAAAGCacaaaca > 2:387838/1‑141
ACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑GGGGCCGC‑TTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCA < 7:60786/149‑1
ACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑GGGGCCGC‑TTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCA < 3:89007/149‑1
CGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGGCCGG‑TTGCGGGCCCCAATT‑CAACCACCAAAGCCCAAACACTAATCAa > 1:160339/1‑148
CGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑GGGGCCGC‑TTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAG < 8:264889/149‑1
GGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑GGGGCCGC‑GTTGCGGGGCCAATTACAAACACCAAAGCCAATACAATCATAAGGg > 1:15506/1‑148
GGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑GGGGCCGC‑TTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATC < 5:147554/149‑1
GGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑GGGGCCGC‑TTTGCGGCCCCCAATACCAACACCACAGCCAATACAATCAACAGGTCATCT > 2:354485/1‑148
GCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑GGGGCCGC‑TTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAA < 7:205779/149‑1
GCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑GGGGCCGC‑TTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAA < 1:137371/149‑1
CAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑GGGGCCGC‑TTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAAT < 7:73578/149‑1
GGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑GGGGCCGC‑TTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATG < 3:196339/149‑1
GCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑GGGGGCGCGTTTCGGGCCCCAATTA‑AAAAACCAAAGCCAAAACAATAATCAGGTGAACTGAATTATTGTgt > 1:229469/1‑147
AGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑GGGGCCGCGTTGGGGGCCCCAATT‑CAAACACCAAAGCCCATAAAAAAATCAGGTCATCTGAATTATGGTGTGg > 7:239693/1‑148
GCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑GGGGCCGC‑TTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCAT < 8:176272/149‑1
CAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑GGGGCCGC‑TTTGGGGCCCCAATTACAAAAACCAAAGCCAAAACAATCAAAAGGTCATCTGAATGATGGTCTGCATGATGGTG > 6:125241/1‑149
CAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑GGGGCCGC‑TTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTG < 7:281292/149‑1
GCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑GGGGCCGC‑TTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCT < 7:65881/149‑1
GCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑GGGGCCGC‑TTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCT < 4:26368/149‑1
GCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑GGGGCCGC‑TTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCAGT < 5:52009/149‑1
CAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑GGGGCCGC‑TTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCAGTG < 6:151804/149‑1
AGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑GGGGGCGC‑TTTGCGGGCCCCATTAAAAACACCAAAGCCCATACAATAATCAGGTCCTCTGATTGATGGTCTGCATGATGGTGCTTTGAGTGG > 6:357799/1‑148
GAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑GGGGCCGC‑TTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATG < 2:352181/149‑1
CAAGGCCAGTAACGACAGCCTCTTCATTCGCGTGAACCTTCACATTCTT‑GGGGCCGC‑TTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTC < 1:367304/149‑1
ACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑GGGGCCGC‑TTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTGGCATTGGC < 3:258400/149‑1
CAGCCGCTTCATTCGCGTGAACCTTCACATTGTT‑GGGGCCGC‑TTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTGGCATTGGCCTGG < 6:177785/149‑1
CCGCTTCATTCGCGTGAACCTTCACATTCTT‑GGGGCCGC‑TTTTCGGCCCCAATTACAAACACCAAAGCCAATACAATAATAAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTAAGTGGAAATGGTCTTGGCATTGGCCTGGTAG > 8:118201/1‑149
GCTTCATTCGCGTGAACCTTCACATTCTT‑GGGGCCGC‑TTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTGGCATTGGCCTGGTAGTT < 2:15506/149‑1
CGCGTGAACCTTCACATTCTT‑GGGGCCGC‑TTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTGGCATTGGCCTGGTAGTTGCTCTGC < 3:106327/148‑1
AACCTTCACATTCTT‑GGGGCCGC‑TTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTGGCATTGGCCTGGTAGTTGCTCTGCGCCTTGA < 4:373194/149‑1
CTTCACATTCTT‑GGGGCCGC‑TTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTGGCATTGGCCTGGTAGTTGCTCTGCGCCTTG < 5:391766/145‑1
CTTCACATTCTT‑GGGGCCGC‑TTTGCGGCCCCAAATACAAACACCAAAGCCAATACAATAATCAGGTCATATGAATGATGGTCTGCATGATGGTGCTTTAAGTGGAAATGGTCTTGGCATTTGCCGGGTAGTTGCTCTGCGCCTTG > 6:391766/1‑145
TTCAGATTCTT‑GGGGCCGC‑TTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTGGCATTGGCCTGGTAGTTGCTCTTCGCCTTGATCAG < 1:313320/149‑1
CACATTCTT‑TGGGCCGC‑TTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTGGCATTGGCCTGGTAGT < 7:272842/128‑1
GGGCCGC‑TTTGCGGCCCCAATTTCAAACCCCAAAGCCAATACAATGATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTGGCATTGGCCTGGTAGTTGCTCTGCGCCTTGATCAGGTTTACCAGCTC > 8:376696/1‑149
GCCGC‑TTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCTGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTGGCATTGGCGTGGTAGTTGCTCTGCGCCTTTATCAGGTTTACCTGCTCGC > 4:28437/1‑149
GCCGC‑TTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTGGCATTGGCCTGGTAGTTGCTCTGCGCCTTGATCAGGTTTACCAGCTCGC > 7:229970/1‑149
GCCGC‑TTTGCGGCCCCAAATACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTGGCATTGGCCTGGTAGTTGCTCTGCGCCTTGATCAGGTTTACAAGATCGa > 4:28434/1‑148
|||
GGGCCGAACACAGGTAGCGGCCGGTGACCAGGCTTTGCCATTGATAGAACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑GG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947_CJ‑RC/4982141‑4982288
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CGC‑TTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTGGCATTGGCCTGGTAGTTGCTCTGCGCCTTGATCAGGTTTACCAGCTCGC > NC_002947_CJ‑RC/4982289‑4982435
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
|---|
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GCCGAACACAGGTAGCGGCCGGTGACCAGGCTTTGCCATTGATAGAACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑‑‑GG‑‑‑CGC‑‑‑‑TTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTGGCATTGGCCTGGTAGTTGCTCTGCGCCTTGATCAGGTTTACCAGCTCGCCGG > NC_002947_CJ‑RC/4982143‑4982438
|
GCCGAACACAGGTAGCGGCCGGTGACCAGGCTTTGCCATTGATAGAACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑‑‑GGggccc > NB501016:282:H2V7GAFX2:2:11304:2104:5976/1‑146 (MQ=60)
CGGCCGGTGACCAGGCTTTGCCATTGATAGAACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑‑‑GGgggcgcggttgggccccca > NB501016:282:H2V7GAFX2:2:11108:10372:18762/1‑131 (MQ=60)
CGGCCGGTGACCAGGCTTTGCCATTGATAGAACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑‑‑GGggccccgttgggggcccaa > NB501016:282:H2V7GAFX2:3:21604:4829:5838/1‑131 (MQ=60)
CCGGTGACCAGGCTTTGCCATTGATAGAACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑‑‑GGGGCCGC‑‑‑‑TTTTCGGGCCCAATTA > NB501016:282:H2V7GAFX2:3:11602:19316:19048/1‑150 (MQ=60)
CCCATTGATAGAACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑‑‑GGGGCCGC‑‑‑‑TTTGCGGCCCCAATTACAAACACCAAAGCCAAT < NB501016:282:H2V7GAFX2:2:21304:14261:9451/151‑1 (MQ=60)
AATTGATAGAACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑‑‑GGGGCCGC‑‑‑‑TTTGCGGCCCCAATTACAAACACCAAAGCCAATAC < NB501016:282:H2V7GAFX2:1:21303:16188:6399/151‑1 (MQ=60)
ATTGATAGAACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑‑‑GGgggcgcgtgggggccccaaattcaaaaaccaaacacaaaaa > NB501016:282:H2V7GAFX2:2:21206:16819:10059/1‑109 (MQ=60)
ATTGATAGAACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑‑‑GG‑‑‑G > NB501016:282:H2V7GAFX2:1:11112:13984:8482/1‑110 (MQ=60)
ACCGGGGCGGGGCCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑‑‑GGGGCCGC‑‑‑‑TTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAG < NB501016:282:H2V7GAFX2:4:11410:15941:17357/151‑1 (MQ=60)
AAGGGGGCGGGGGCAGGGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑‑‑GGGGCCGC‑‑‑‑TTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAG < NB501016:282:H2V7GAFX2:2:11204:7650:12899/151‑1 (MQ=60)
ACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑‑‑GGgggccggttgcgggccccaattcaaccaccaaagcccaaacactaatcaac > NB501016:282:H2V7GAFX2:1:11303:10062:2790/1‑100 (MQ=60)
GGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑‑‑GGGGCCGC‑‑‑‑GTTGCGGGGCCAATTACAAACACCAAAGCCAATACAATCATaagggg > NB501016:282:H2V7GAFX2:1:11103:7964:7990/1‑145 (MQ=60)
GGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑‑‑GGGGCCGC‑‑‑‑TTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCT < NB501016:282:H2V7GAFX2:3:11602:19961:6598/151‑1 (MQ=60)
GGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑‑‑GGGGCCGC‑‑‑‑TTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAAT < NB501016:282:H2V7GAFX2:4:11611:10130:10958/151‑1 (MQ=60)
GGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑‑‑GGGGCCGC‑‑‑‑TTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAAT < NB501016:282:H2V7GAFX2:1:11211:2658:4308/151‑1 (MQ=60)
GCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑‑‑GGGGCCGC‑‑‑‑TTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATG < NB501016:282:H2V7GAFX2:4:11412:18550:18077/151‑1 (MQ=60)
CGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑‑‑GGGGCCGC‑‑‑‑TTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGG < NB501016:282:H2V7GAFX2:2:11310:20619:12705/151‑1 (MQ=60)
GGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑‑‑GGgggcgcggtggggggccccattacaaaaccaaacacaaaaaaaaaaaaaagggatatgaatgtttgtg > NB501016:282:H2V7GAFX2:2:11104:12601:16096/1‑83 (MQ=60)
GGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑‑‑GGgggcgcgtttcgggccccaattaaaaaaccaaagccaaaacaataatcaggtgaactgaattattgtgtg > NB501016:282:H2V7GAFX2:1:21103:18983:3572/1‑81 (MQ=60)
CAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑‑‑GG‑‑‑GGCCGCGTTGGGGGCCCCAATT‑CAAACACCAAAGCCCATAAAAAAATCAGGTCATCTGAATTATGGTgtggt > NB501016:282:H2V7GAFX2:4:21405:3261:7532/1‑146 (MQ=60)
CCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑‑‑GGggccgcgtttgggcccccaataaaaacaccaaagccaaaaaaataataaggtcaactgaattatggtgttgatgattggtg > NB501016:282:H2V7GAFX2:2:21112:22637:12852/1‑70 (MQ=60)
CCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑‑‑GGGGCCGC‑‑‑‑TTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGC < NB501016:282:H2V7GAFX2:4:21412:17382:3262/151‑1 (MQ=60)
AGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑‑‑GGGGCCGC‑‑‑‑TTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTT < NB501016:282:H2V7GAFX2:4:11411:5528:13800/151‑1 (MQ=60)
CCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑‑‑GGggggcgggttgcgcccccaataaaaacaccaaaacccaaacgaaaatgacgtgaacggaaagatgggctgggatattgtggttgatc > NB501016:282:H2V7GAFX2:3:11402:17614:11465/1‑64 (MQ=60)
AGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑‑‑GGGGCCGC‑‑‑‑TTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCAGTG < NB501016:282:H2V7GAFX2:3:11410:5546:7173/151‑1 (MQ=60)
ACAAGGCCAGTAACGACAGCCTCTTCATTCGCGTGAACCTTCACATTCTT‑‑‑GGGGCCGC‑‑‑‑TTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCT < NB501016:282:H2V7GAFX2:1:21303:24871:13198/151‑1 (MQ=60)
TAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑‑‑GGGGCCGC‑‑‑‑TTTGGGGCCCCAAATTCAAAAACCAAAGCCAAaaaaaaaaaaacgtgaactgtaagattgtgtggaatatggggctttaagtggaaattgtctttgcattggg > NB501016:282:H2V7GAFX2:4:21408:22178:10557/1‑80 (MQ=59)
AACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑‑‑GGGGCCGC‑‑‑‑TTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTGGCATTGGCC < NB501016:282:H2V7GAFX2:2:21109:18746:17736/151‑1 (MQ=60)
TCGCGTGAACCTTCACATTCTT‑‑‑GGGGCCGC‑‑‑‑TTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTGGCATTGGCCTGGTAGTTGCTCTGCG < NB501016:282:H2V7GAFX2:2:11207:25921:12857/150‑1 (MQ=60)
CCTTCACATTCTT‑‑‑GGGGCCGC‑‑‑‑TTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTGGCATTGGCCTGGTAGTTGCTCTGCGCCTTGA < NB501016:282:H2V7GAFX2:3:21608:4248:5899/147‑1 (MQ=60)
TCACATTCTTTGGGC‑‑‑CGC‑‑‑‑TTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTGGCATTGGCCTGGTAGTT < NB501016:282:H2V7GAFX2:4:21410:21190:16088/130‑1 (MQ=60)
C‑‑‑CGC‑‑‑‑TTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTGGCATTGGCCTGGTAGTTGCTCTGCGCCTTGATCAGGTTTACCAGCTCGCCGG < NB501016:282:H2V7GAFX2:1:21307:19691:13561/151‑1 (MQ=60)
|
GCCGAACACAGGTAGCGGCCGGTGACCAGGCTTTGCCATTGATAGAACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑‑‑GG‑‑‑CGC‑‑‑‑TTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTGGCATTGGCCTGGTAGTTGCTCTGCGCCTTGATCAGGTTTACCAGCTCGCCGG > NC_002947_CJ‑RC/4982143‑4982438
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
