Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A5 F61 I1 R1
|
63 |
66.6 |
2847048 |
98.6% |
2807189 |
146.5 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| JC |
NC_002947_CJ‑RC |
4,982,288 |
+GGC |
intergenic (‑24/+44) |
PP_4387 ← / ← flgE |
hypothetical protein/flagellar hook protein FlgE |
|
| |
seq id |
position |
reads (cov) |
reads (cov) |
score |
skew |
freq |
annotation |
gene |
product |
| * |
? |
NC_002947_CJ‑RC |
= 4982288 | 3 (0.050) | 44 (0.680)
+GGC |
36/286 |
1.4 |
93.7% |
intergenic (‑24/+44) |
PP_4387/flgE |
hypothetical protein/flagellar hook protein FlgE |
| ? | NC_002947_CJ‑RC |
4982289 = |
3 (0.050) | intergenic (‑25/+43) |
PP_4387/flgE |
hypothetical protein/flagellar hook protein FlgE |
GGCCGAACACAGGTAGCGGCCGGTGACCAGGCTTTGCCATTGATAGAACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947_CJ‑RC/4982142‑4982288
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CGCTTTGC‑GGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTGGCATTGGCCTGGTAGTTGCTCTGCGCCTTGATCAGGTTTACCAGCTCGC > NC_002947_CJ‑RC/4982289‑4982435
|||
GGCCGAACACAGGTAGCGGCCGGTGACCAGGCTTTGCCATTGATAGAACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGG < 1:302244/149‑1
GAACACAGGTAGCGGCCGGTGACCAGGCTTTGCCATTGATAGAACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCG > 7:217478/1‑148
AACACAGGTAGCGGCCGGTGACCAGGCTTTGCCATTGATAGAACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGC > 7:294173/1‑148
AGGTAGCGGCCGGTGACCAGGCTTTGCCATTGATAGACCGGGGGGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGCTTTGC < 7:241977/148‑1
GGTAGCGGCCGGTGACCAGGCTTTGCCATTGATAGAACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGCTTTGC‑GG < 1:272216/149‑1
CCGGTGACCAGGCTTTGCCATTGATAGAACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGCTTTGC‑GGCCCCAAT < 7:194112/148‑1
CGGTGACCAGGCTTTGCCATTGATAGAACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGCTTTGC‑GGCCCCAATTA < 5:311109/149‑1
GGTGACCAGGCTTTGCCATTGATAGAACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGCTTTGC‑GGCCCCAATTA < 7:315515/148‑1
GACCAGGCTTTGCCATTGATAGAACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGCTTTGC‑GGCCCCAATTACAAA > 1:276259/1‑149
CAGGCTTTGCCATTGATAGAACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGGGTTGCGGGCCCCAATTAAAAAa > 5:231903/1‑147
CAGGCTTTGCCATTGAAAGAACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGCTTTGC‑GGCCCCAATTACAAACA > 7:267575/1‑148
CAGGCTTTGCCATTGAAAGAACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGCGTTGC‑GGCCCCAATTACAAACA > 7:272319/1‑148
CTTTGCCATTGATAGAACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGCTTTGC‑GGGCCCAATTACAAACACCA > 8:323744/1‑147
ATTGATAGAACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCCCGTTTG‑GGCCCCAATTAAAAAAACCAAAACCAAa > 5:291313/1‑147
GATAGAACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGCAAAGC‑GGCCCCAAgaa > 3:226620/1‑125
TAGAACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGCTTTGC‑GGCCCCAATTACAAACACCAAAGCCAATACAA < 7:284539/147‑1
AGAACGGGGCGGGGGCTGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGCTTTGC‑GGCCCCAATTACAAACACCAAAGCCAATACAATC < 8:36073/148‑1
GGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGCTTTGC‑GGCCCCAATTACAAACACCAAAGCCAAAACAATCATCAAGTCATCT > 4:290609/1‑148
AGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGCGTTGC‑GGCCCCAATTAAAAACACCAAAGCCAATAAAATCATCAGGTCATCTGAAT > 6:63010/1‑148
GGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGCTTTGC‑GGCCCCCATTTCAAACACCAAAGCCAATACAATCATCAGGTGATCTGAATGATGGTC > 2:104426/1‑149
AGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGCTTTGC‑GGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGC < 3:285728/149‑1
GGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGCTTTGC‑GGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCA < 2:276259/149‑1
GCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGCTTTGC‑GGCCCCCAATAAAAACACCAAAGCCAATACAATCATAAGGTCATCTGAATGATGGTCTGGAT > 6:68102/1‑149
GCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGCTTTGC‑GGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCA < 8:217478/148‑1
GCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGCGTTTC‑GGCCCCAATTAAAAACACCAAAACCAAAACAAAAATAAAGTCATCAGAATTATTGTCatca > 2:321796/1‑144
GCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCCCTTTGC‑GGCCCCCAATACAAACACCCAAGCCAAAAAAATAATAAAGTCATATGAAAGATGGTCTGGAT > 4:270230/1‑149
AGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGCTTTTC‑GGCCCCAATTTAAAAAACCAAAGCCAATACAAAAATAAGGTCAACTGAATGATGGTCTGg > 4:274619/1‑144
AGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGCTTTGC‑GGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGC < 3:274619/145‑1
ACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGCTTTGC‑GGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATG < 7:309616/148‑1
CCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGCTTTGC‑GGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTT > 8:70704/1‑147
GGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGCTTTGC‑GGCCCCAAATACAAACACCAAAGCCAAAACAATCAAAAGGTCATCTGAATGATGGGCTGCATGATGGTGGTTTGAGTGGAAA > 4:179327/1‑149
AACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGCTTTGC‑GGCCCCAATTACAAACACCAAAGCCAATACAAAAATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTAAGTGGAAtggt > 2:102873/1‑145
GCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGCTTTGC‑GGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTG < 7:79009/148‑1
CAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGCTTTGC‑GGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTTGCA < 1:278056/149‑1
GACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGCTTTGC‑GGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTGGCATTGGCCT < 3:194450/149‑1
GACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGCGTTGC‑GGCCCCAATTACAAACACCAAAGCCAAAACAATAATCACGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTGGCATTGGCC > 8:303533/1‑148
AGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGCGTTTG‑GGCCCCAATTACAAACACCAAAGCCAAAACAATAATCAGGTCAAATGAATGATTGTCTGCATGATGGTGGTTTAAGTGGAAATGGTGTTTGGATTGGCCTGGT > 2:128030/1‑149
ATTCGCGTGAACCTTCACATTCTTGGGGCCGCTTTGC‑GGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTGGCATTGGCCTGGTAGTTGCTCT < 5:122720/149‑1
ATTCGCGTGAACCTTCACATTCTTGGGGCCGCTTTGC‑GGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTGGCATTGGCCTGGTAGTTGC < 7:70704/146‑1
ATTCGCGTGAAACTTCACATTCTTGTGGCCGCTTTGC‑GGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTGGCATTGGCCTGGTAGTTGCTCT < 3:162180/149‑1
CACATTCTTGGGGCCGCTTTGC‑GGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTGGCATTGGCCTGGTAGTTGCTCTGCGCCTTGATCAGG < 2:351959/148‑1
ATTCTTGGGGCCGCTTTGC‑GGCCCCAATTACAAACACCAAAGCCAATACAATAATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTGGCATTGGCCTGGTAGTTGCTCTGCGCCTTGATCAGGTTTA > 3:179697/1‑149
TTCTTGGGGCCGCTTTGC‑GGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTGGCATTGGCCTGGTAGTTGCTCTGCGCCTTGATCAGGTTTAC < 6:291313/149‑1
TGGGGCCGCTTTGC‑GGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTGGCATTGGCCTGGTAGTTGCTCTGCGCCTTGATC > 8:41045/1‑137
GGGGCCGCTTTGC‑GGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTGGCATTGGCCTGGTAGTTGCTCTGCGCCTTGATCA < 7:41045/137‑1
GCCGCTTTGC‑GGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTGGCATTGGCCTGGTAGTTGCTCTGCGCCTTGATCAGGTTTACCAGCTCGC < 1:321796/149‑1
GCCGCTTTGC‑GGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTGGCATTGGCCTGGTAGTTGCTCTGCGCCTTGATCAGGTTTACCAGCTCGC < 3:111849/149‑1
|||
GGCCGAACACAGGTAGCGGCCGGTGACCAGGCTTTGCCATTGATAGAACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947_CJ‑RC/4982142‑4982288
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CGCTTTGC‑GGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTGGCATTGGCCTGGTAGTTGCTCTGCGCCTTGATCAGGTTTACCAGCTCGC > NC_002947_CJ‑RC/4982289‑4982435
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
|---|
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GTGGGCCGAACACAGGTAGCGGCCGGTGACCAGGCTTTGCCATTGATAGAACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑‑‑GG‑‑‑CGCTTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTGGCATTGGCCTGGTAGTTGCTCTGCGCCTTGATCAGGTTTAC > NC_002947_CJ‑RC/4982139‑4982427
|
GTGGGCCGAACACAGGTAGCGGCCGGTGACCAGGCTTTGCCATTGATAGAACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑‑‑GG‑‑‑G > NB501016:282:H2V7GAFX2:1:21312:15326:1090/1‑151 (MQ=60)
GTGGGCCGAACACAGGTAGCGGCCGGTGACCAGGCTTTGCCATTGATAGAACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑‑‑GG < NB501016:282:H2V7GAFX2:1:11209:2812:5181/150‑1 (MQ=60)
GTGGGCCGAACACAGGTAGCGGCCGGTGACCAGGCTTTGCCATTGATAGAACGGGGCGGGGGCAGCGGGGGAAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑‑‑GG‑‑‑G > NB501016:282:H2V7GAFX2:3:21503:19328:17219/1‑151 (MQ=60)
GGGCCGAACACAGGTAGCGGCCGGTGACCAGGCTTTGCCATTGATAGAACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑‑‑GG‑‑‑GGC < NB501016:282:H2V7GAFX2:1:21212:26701:17141/151‑1 (MQ=60)
CGAACACAGGTAGCGGCCGGTGACCAGGCTTTGCCATTGATAGAACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑‑‑GGggccgcg > NB501016:282:H2V7GAFX2:4:21407:19690:14855/1‑144 (MQ=60)
GAACACAGGTAGCGGCCGGTGACCAGGCTTTGCCATTGATAGAACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑‑‑GGGGCCGCTT > NB501016:282:H2V7GAFX2:4:21510:22351:16039/1‑151 (MQ=60)
ACAGGTAGCGGCCGGTGACCAGGCTTTGCCATTGATAGACCGGGGGGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑‑‑GGGGCCGCTTTGCG < NB501016:282:H2V7GAFX2:4:21412:26028:7389/151‑1 (MQ=60)
AGGTAGCGGCCGGTGACCAGGCTTTGCCATTGATAGAACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑‑‑GGGGCCGCTTTGCGGC < NB501016:282:H2V7GAFX2:1:21206:22343:15061/151‑1 (MQ=60)
GGCCGGTGACCAGGCTTTGCCATTGATAGAACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑‑‑GGGGCCGCTTTGCGGCCCCAATT < NB501016:282:H2V7GAFX2:4:21403:12265:4800/151‑1 (MQ=60)
CCGGTGACCAGGCTTTGCCATTGATCGACCGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑‑‑GGGGCCGCTTTGCGGCCCCAATTAC < NB501016:282:H2V7GAFX2:3:21603:13063:9924/151‑1 (MQ=60)
CCGGTGACCAGGCTTTCCCATTGATAGACGGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑‑‑GGGGCCGCTTTGCGGCCCCAATTAC < NB501016:282:H2V7GAFX2:4:21603:7172:1916/151‑1 (MQ=60)
TGACCAGGCTTTGCCATTGATAGAACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑‑‑GGGGCCGCTTTGCGGCCCCAATTACAAAC > NB501016:282:H2V7GAFX2:1:21207:6396:12215/1‑151 (MQ=60)
CCAGGCTTTGCCATTGATAGAACGTGGCGGGGGCAGCGGGGGAAGGCAGAAAAAGCAACAGAAAGCGGAACAAGCCCAGTAACGACATACGCATCATTCTCGAGAACCTTAACATTCTT‑‑‑GGggccccagttgtgcaacaatatcaaaaaa > NB501016:282:H2V7GAFX2:3:21406:25028:14419/1‑121 (MQ=46)
CCAGGCTTTGCCATTGATAGAACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑‑‑GGggccgggttgcgggccccaattaaaaaac > NB501016:282:H2V7GAFX2:3:21411:8959:7980/1‑121 (MQ=60)
CCAGGCTTTGCCATTGAAAGAACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑‑‑GGGGCCGCTTTGCGGCCCCAATTACAAACACC > NB501016:282:H2V7GAFX2:4:21505:26814:9863/1‑151 (MQ=60)
CCAGGCTTTGCCATTGAAAGAACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑‑‑GGGGCCGCGTTGCGGCCCCAATTACAAACACC > NB501016:282:H2V7GAFX2:4:21506:1344:9863/1‑151 (MQ=60)
CATTGATAGAACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑‑‑GGggccccgtttgggccccaattaaaaaaaccaaaaccaaaa > NB501016:282:H2V7GAFX2:3:21511:25362:13055/1‑110 (MQ=60)
CATTGATAGAACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑‑‑GGGGCCGCGTTGCGGGCCCAATTACAAACACCCAAGCCcaaa > NB501016:282:H2V7GAFX2:4:11403:11206:12608/1‑146 (MQ=60)
TGATAGAACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑‑‑GGggccgcaaagcggccccaagaat > NB501016:282:H2V7GAFX2:2:21110:16425:18486/1‑107 (MQ=60)
GATAGACCGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑‑‑GGGGCCGCTTTGCGGCCCCAATTACAAACACCAAAGCCAATACAAT < NB501016:282:H2V7GAFX2:4:21508:20827:17675/150‑1 (MQ=60)
CAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑‑‑GGGGCCGCTTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCA < NB501016:282:H2V7GAFX2:2:21301:10150:4117/151‑1 (MQ=60)
GGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑‑‑GGgggcccggttcggcccccatttaaaacccaaaagccaaaacaataatcactggctctgaatattggtctgcagg > NB501016:282:H2V7GAFX2:4:21401:14428:14296/1‑77 (MQ=60)
CAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑‑‑GGgggcgcgtttgggcccccataaaaaaaaaccaaaccaaaaaaaaaaaaaagtgataagaaattttgtagggtagtt > NB501016:282:H2V7GAFX2:1:21203:12877:2349/1‑75 (MQ=60)
CAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑‑‑GGGGCCGCTTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCA < NB501016:282:H2V7GAFX2:2:21210:1904:13370/147‑1 (MQ=60)
GAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑‑‑GGGGCCGCTTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGG < NB501016:282:H2V7GAFX2:4:21601:13239:17667/151‑1 (MQ=60)
CAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑‑‑GGGGCCGCTTTGCGGCCCCAATTAAAAACACCAAAGCCAATAAAATCATAAGGTCATATGAATGATGGTCTGCATGATGGTGCT > NB501016:282:H2V7GAFX2:4:21510:22165:19529/1‑151 (MQ=60)
AAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑‑‑GGGGCCGCGTTGCGGCCCCCATTACAAACACCCAAGCCCAAACAAACAGCAGGGCATCTGAATGATGGgcggcagtctggtgggttgagggga > NB501016:282:H2V7GAFX2:1:11204:26751:19103/1‑125 (MQ=60)
AAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑‑‑GGGGCCGCATTGCGGCCCCCAATACAAAACCCCAAGCCAAAACAAACATCAGGTAAGCGGAATGATGGTATGGCTGAGGGTGCTGTCAGTGGA > NB501016:282:H2V7GAFX2:1:11203:1311:19108/1‑150 (MQ=50)
GGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑‑‑GGggccgcgtttggggcccaaataaaaaaaccaaacccaaaaaaataaacaggggatcgggatgattgtgggcgtgttggtggtttgagttgtaatt > NB501016:282:H2V7GAFX2:2:11310:23650:6259/1‑56 (MQ=60)
GCACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑‑‑GGgggcccggttggggccccaataaaaaaaccaaagaccaaacaaaaataaggtgatgtgctatatggtcgtgctgaatggggtgtaattggttattgt > NB501016:282:H2V7GAFX2:3:11408:2459:11885/1‑54 (MQ=60)
AGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑‑‑GGGGCCGCTTTGCGGGCCCAATTAAAAAAACCAAAGacaaaaaaaaaaaaacgggatatgaattattgtgtggattaatgtgcttttagtggaaatggtgttgg > NB501016:282:H2V7GAFX2:1:21107:1657:11899/1‑83 (MQ=60)
AGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑‑‑GGGGCCGCTTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTGG < NB501016:282:H2V7GAFX2:4:11504:3111:4188/151‑1 (MQ=60)
CCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑‑‑GGGGCCGCTTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTTGCAT < NB501016:282:H2V7GAFX2:1:21207:7992:19549/151‑1 (MQ=60)
CGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑‑‑GGGGCCGCTTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTGGCATTGGCCTG < NB501016:282:H2V7GAFX2:2:21103:4825:19224/151‑1 (MQ=60)
TCATTCGCGTGAACCTTCACATTCTT‑‑‑GGGGCCGCTTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTGGCATTGGCCTGGTAGTTGCT < NB501016:282:H2V7GAFX2:4:11502:23173:11009/149‑1 (MQ=60)
CATTCGCGTGAACCTTCACATTCTT‑‑‑GGGGCCGCTTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTGGCATTGGCCTGGTAGTTGCTCTG < NB501016:282:H2V7GAFX2:3:11601:14019:9834/151‑1 (MQ=60)
CATTCGCGTGAAACTTCACATTCTTGTGGC‑‑‑CGCTTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTGGCATTGGCCTGGTAGTTGCTCTG < NB501016:282:H2V7GAFX2:2:11309:19121:10376/151‑1 (MQ=60)
CGCGTGAACCTTCACATTCTT‑‑‑GGGGCCGCGTTGGGGCCCCAATTACAAACACCAAAGCCCATAAAATCATCAGGTCAAGTGTATGATGGTGTGGATGATGGGGGTTTGAGTGGAAATTGGCTTGGCATTTGGCTGGTAGTTGGTCTGCGCC > NB501016:282:H2V7GAFX2:1:21103:4630:16144/1‑151 (MQ=43)
AACCTTCACATTCTT‑‑‑GGGGCCGCTTTGCGGCCCCAAATAAAAACACCAAAGCCAATAAAATAATCAGGTCATCTGAATGATGGTCTGCATGATGGTGGGTTAAGTGGAAATTGTCTTGGCATTGGCCTGGTTGTTTCTCTGCGCCgttat > NB501016:282:H2V7GAFX2:3:11603:7243:11110/1‑145 (MQ=60)
CATTCTT‑‑‑GGGGCCGCTTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATAATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCACTGGAAATGGTCTTGGCATTGGCCTGGTAGTTGCTATGCGCCTTGATCAGGTTTAC > NB501016:282:H2V7GAFX2:2:11312:11804:16421/1‑151 (MQ=60)
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GTGGGCCGAACACAGGTAGCGGCCGGTGACCAGGCTTTGCCATTGATAGAACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑‑‑GG‑‑‑CGCTTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTGGCATTGGCCTGGTAGTTGCTCTGCGCCTTGATCAGGTTTAC > NC_002947_CJ‑RC/4982139‑4982427
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
