Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F64 I1 R1
|
60 |
70.4 |
2989830 |
98.5% |
2944982 |
146.7 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| JC |
NC_002947_CJ‑RC |
4,982,288 |
+GGC |
intergenic (‑24/+44) |
PP_4387 ← / ← flgE |
hypothetical protein/flagellar hook protein FlgE |
|
| |
seq id |
position |
reads (cov) |
reads (cov) |
score |
skew |
freq |
annotation |
gene |
product |
| * |
? |
NC_002947_CJ‑RC |
= 4982288 | 5 (0.070) | 45 (0.660)
+GGC |
36/286 |
1.4 |
90.2% |
intergenic (‑24/+44) |
PP_4387/flgE |
hypothetical protein/flagellar hook protein FlgE |
| ? | NC_002947_CJ‑RC |
4982289 = |
5 (0.070) | intergenic (‑25/+43) |
PP_4387/flgE |
hypothetical protein/flagellar hook protein FlgE |
CAGGTAGCGGCCGGTGACCAGGCTTTGCCATTGATAGAACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947_CJ‑RC/4982151‑4982288
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CGCTTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTGGCATTGGCCTGGTAGTTGCTCTGCGCCTTGATCAGGTTTAC > NC_002947_CJ‑RC/4982289‑4982427
|||
CAGGTAGCGGCCGGTGACCAGGCTTTGCCATTGATAGAACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGCTTTGt > 8:276736/1‑148
CAGGTAGCGGCCGGTGACCAGGCTTTGCCATTGATAGAACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGCTTTGC < 2:167891/149‑1
AGGTAGCGGCCGGTGACCAGGCTTTGCCATTGATAGAACGGGGCGCGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAAAGACAGCCGCTTCATTCGCGTCAACCTACACATTCTTGGGGGCGCCTTGgc > 4:46522/1‑147
GTAGCGGCCGGTGACCAGGCTTTGCCTTTGATAGAACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGCGTTGCGGC > 1:49443/1‑149
GGCGGGTGACCTGGCTTTGCCATTGTTAGACCGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGCTTTGCGGCCCCAA < 6:125107/149‑1
GGCCGGTGACCAGGCTTTGCCATTGATAGACCGGGGCGGGGCCCGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGCAAAGCGGCCCCAA < 6:324770/149‑1
ACCAGGCTTTGCCATTGATAGAACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCCCGTTGGGGCCCCAAATACAAA > 5:246793/1‑148
CAGGCTTTGCCATTGATAGAACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGCTTTGCGGCCCCAATTACAAACAC > 7:5785/1‑149
CAGGCTTTGCCATTGATAGAACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGCATATCGGCCCCAAAAAAAAACA > 3:303593/1‑148
TAGAACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGCTTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATC < 7:256929/149‑1
TAGAACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATACGCGTGAACCTTCACATACTTGGGGCCGCGTTGCGCCCCCCAATACAAAAACCAAACACAAAACAAT > 1:145463/1‑148
AACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCCCTTTTGGGCCCCAAATACAAACACCAAACCCAAAACAAagat > 8:81990/1‑144
ACGGGGCGGGGGCAGGGGGGGCTTGCAGATCCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCAGATTCTTTGGGCCGCTTTGCGGCCGCAATTACAAAAACCAAAGCCAATACAATCATC < 3:46522/148‑1
GGCGGGGGCTGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGCTTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTC < 3:331192/149‑1
GGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGCTTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCT > 6:260535/1‑148
GGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGCGTTGCGGCCCCAATTAGAAACACCAAAGCCAATACAATCATCAGGAGATCTt > 1:316091/1‑148
GCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGGCGCGTTGGGGCCCCCATAACAAACACCAAACCCAATAAAAAAATCAGGTGATATGAATGATGGTgt > 2:150494/1‑147
GGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGCTTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCA > 6:290961/1‑149
CAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGCTTTGCGGGCCCAAATTCAAACACCAAAGCCAATACAATAATCAGGTGATCTGAATTATGGTGTGCATt > 6:338579/1‑148
GAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGGCGCTTTGCGGCCCCAAATTCAAAAACCAAAGCCAATACAATCATAAGGTCATATGAATGATGGTCTGCAAGAT > 8:158032/1‑149
AACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGCTTTGTGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATG < 7:276736/149‑1
CAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGCTTTGCGGCCCCCATTAAAAACACCAAAGCCAATACAAACATCAGGTCATCTGAATGATGGGCTGCATGATGGTG > 7:256732/1‑149
ctGCAAGGGTAACAATGCCTGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGCTTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCA < 2:145463/147‑1
CAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGCTTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCA < 2:310943/149‑1
GCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGGTTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTGAGT > 2:50795/1‑149
GCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGCTTTGGGGCCCCCAATACAAACAACAAAGCCAATACAATCATCAGGGAATATGAATTATGGTATGGATGATTGGGCTTTAAGT > 8:337890/1‑149
GCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGCTTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCAGT < 1:371625/149‑1
GAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGCTTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATG < 3:276722/149‑1
tccCCAGTAACTACAGACGCTTCATTCTCGTGAACCTTCACATTCTTGTGGCCGCTTTGCGGCCAGAATTACAAACACCAAAGCAAATACAATCATCAGGTCATCTGAATGATGGTCTTCATGATGGTGCTTTCAGTGGAAATTGTCTT < 5:370464/146‑1
AGGCCAGTAACTACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGCTTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTT < 3:340862/149‑1
CAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGCTTTTCGGGCCCAAATACAAACACCAAAGCCAATACAATAATCAGGGCATCTGAATGATGGTCTGCAAGATGGTGCTTTAAGTGGAAATTGTGTTGGCATTGGCCTGG > 8:383910/1‑149
CAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGCTTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTGGCATTGGCCTGG < 4:101457/149‑1
CAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGAGGCCGCTTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTGGCATTGGCCTGG < 1:127541/149‑1
AGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGCTTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTGGCATTGGCCTGGT < 7:83103/149‑1
GCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGCTTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTGGCATTGGCCTGGTA < 7:123017/149‑1
CCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGCTTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTGGCATTGGCCTGGTAG < 4:88840/149‑1
TGAACCTTCACATTCTTGGGGCCGCTTTGCGGCCCCAATTACAAACACCAAATCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTGGCATTGGCCTGGTAGTTGCTCTGCGCCTT < 4:259442/149‑1
TGAACCTTCACATTCTTGGGGCCGCTTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTGGCATTGGCCTGGTAGTTGCTCTGCGCCTT < 1:352636/149‑1
GAACCTTCACATTCTTGGGGCCGCTTTGCGGGCCCAATTAAAAACACCAAAGCCAATACAATCATAAGGTCATCTGAATTATGGTGTGGATGATGGTGCTTTGAGTGGAAATGGTGTTGGCATTGGGCGGGTTGTTGCTCGTGGCCTTG > 6:311753/1‑149
CTTCACATTCTTGGGGCCGCTTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTGGCATTGGCCTGGTAGTTGCTCTGCGCCTTGATCA < 7:158032/149‑1
ATTCTTGGGGCCGCTTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTGGCATTGGCCTGGTAGTTGCTCTGCGCCTTGATCAGGTTTA > 5:325569/1‑149
TTCTTGGGGCCGCTTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTGGCATTGGCCTGGTAGTTGCTCTGCGCCTTGATCAGGTTTAC < 5:260535/149‑1
TTCTTGGGGCCGCTTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTGGCATTGGCCTGGTAGTTGCTCTGCGCCTTGATCAGGTTTAC < 8:5785/149‑1
TTGGGGCCGCAAAGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTGGCATT > 1:241158/1‑110
TTGGGGCCGCAAAGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTGGCATT < 2:241158/110‑1
|||
CAGGTAGCGGCCGGTGACCAGGCTTTGCCATTGATAGAACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947_CJ‑RC/4982151‑4982288
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CGCTTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTGGCATTGGCCTGGTAGTTGCTCTGCGCCTTGATCAGGTTTAC > NC_002947_CJ‑RC/4982289‑4982427
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
|---|
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GTGGGCCGAACACAGGTAGCGGCCGGTGACCAGGCTTTGCCATTGATAGAACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑‑‑GG‑‑‑CGC‑‑‑‑TTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTGGCATTGGCCTGGTAGTTGCTCTGCGCCTTGATCAGGTTTACC > NC_002947_CJ‑RC/4982139‑4982428
|
GTGGGCCGAACAACGGTAGCGGCCGGTGACCAGGCTTTGCCATTGATAGAACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑‑‑GG‑‑‑G < NB501016:282:H2V7GAFX2:1:11104:4098:10559/151‑1 (MQ=60)
CGACCCCAGGTCGCGGCCGATGACCAGGCTTTGCCATTGATAGAACGGGGCGGGGGCCGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑‑‑GGggccgct < NB501016:282:H2V7GAFX2:1:11106:2479:17088/151‑8 (MQ=60)
GGTAGCGGCCGGTGACCAGGCTTTGCCTTTGATAGAACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑‑‑GGGGCCGC‑‑‑‑GTTGCGGCC > NB501016:282:H2V7GAFX2:1:11109:22708:14949/1‑151 (MQ=60)
GACCAGGCTTTGCCATTGATAGAACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑‑‑GGggccccgttggggccccaaatacaaac > NB501016:282:H2V7GAFX2:3:21412:19520:8172/1‑123 (MQ=60)
CCAGGCTTTGCCATTGATAGAACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑‑‑GGggccgcatatcggccccaaaaaaaaacac > NB501016:282:H2V7GAFX2:2:21301:17646:18910/1‑121 (MQ=60)
CCAGGCTTTGCCATTGATAGAACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑‑‑GGGGCCGC‑‑‑‑TTTGCGGCCCCAATTACAAACACC > NB501016:282:H2V7GAFX2:4:11402:6461:2571/1‑151 (MQ=60)
CATTGATAGAACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGG‑‑‑CGC‑‑‑‑GTTGCGGCCCCCATTAAAAACACCAAAGCCAAAA > NB501016:282:H2V7GAFX2:3:21512:7067:11602/1‑150 (MQ=60)
ATAGAACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑‑‑GGGGCCGC‑‑‑‑TTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCA < NB501016:282:H2V7GAFX2:4:21412:10858:19814/151‑1 (MQ=60)
ATAGAACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATACGCGTGAACCTTCACATACTT‑‑‑GGggccgcgttgcgccccccaatacaaaaaccaaacacaaaacaata > NB501016:282:H2V7GAFX2:1:11303:24478:12969/1‑105 (MQ=60)
TACGGGGCGGGGGCAGGGGGGGCTTGCAGATCCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCAGATTCTTTGGGC‑‑‑CGC‑‑‑‑TTTGCGGCCGCAATTACAAAAACCAAAGCCAATACAATCATCA < NB501016:282:H2V7GAFX2:2:11110:15752:2511/150‑1 (MQ=60)
GGGCGGGGGCTGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑‑‑GGGGCCGC‑‑‑‑TTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCA < NB501016:282:H2V7GAFX2:2:21307:25827:9271/151‑1 (MQ=60)
GGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑‑‑GGGGCCGC‑‑‑‑GTTGCGGCCCCAATTAGAAACACCAAAGCCAATACAATCATCAGGagatcttg > NB501016:282:H2V7GAFX2:1:21212:20857:13371/1‑143 (MQ=60)
GGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑‑‑GGggccccgttggggccccaaataaaaacaacaaacacaaaaaaaaaataaaatcaaaagaattaatgtat > NB501016:282:H2V7GAFX2:2:21204:10935:19886/1‑82 (MQ=60)
CAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑‑‑GGggccgcgtttgggcccccaataaaaaaaccaaagacaaaaaaaaaataaggtgatatataggaagagcacac > NB501016:282:H2V7GAFX2:4:11602:11158:10438/1‑79 (MQ=60)
GGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑‑‑GGGGCCGC‑‑‑‑TTTGCGGCCCCAAATACAAAAACCAAAGCAAATACAAACATAACGTCATGAGAATGATGGTCTGGATG > NB501016:282:H2V7GAFX2:3:11601:1478:15512/1‑151 (MQ=60)
GCAGAACCAGCCCCAGCAAGGGGAACAAGGCCAGTAACGACATCCGCTTCATACGCGTGAACCTTCACATTCTT‑‑‑GGggccgccgtggaggccgccataaatacaaccaaacaacaacaaacaactagtcagaacaaaaattgggtgca > NB501016:282:H2V7GAFX2:4:21603:12993:11517/1‑76 (MQ=60)
GAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑‑‑GGGGCCGC‑‑‑‑TTTGTGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGG < NB501016:282:H2V7GAFX2:4:21504:24796:13982/151‑1 (MQ=60)
AACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑‑‑GGgggcgcgttggggcccccaataaaaaaaccaaaaccaaaaaaaaaaaaatgtcatattaattatggtgtggatgatgtt > NB501016:282:H2V7GAFX2:3:11405:3679:20306/1‑72 (MQ=60)
CCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑‑‑GGGGCCGC‑‑‑‑TTTGCGGCCCCCATTAAAAACACCAAAGCCAATACAAACATCAGGTCATCTGAATGATGGGCTGCATGATGGTGG > NB501016:282:H2V7GAFX2:4:21412:2512:19085/1‑151 (MQ=60)
AGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑‑‑GGggccgccgggcgggccccaaaaaaaaaaccaaaaccaaaacaaaaataaagtcataatgatgaaagtggtaaacataaaaaac > NB501016:282:H2V7GAFX2:4:21605:7563:3217/1‑68 (MQ=60)
CCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑‑‑GG‑‑‑GGCCCCGTTT‑CGGCCCCAAATACAAACACCAAAaccaaaaaaaacataacgtcaacagaattattgtgtgcatgatggggggttc > NB501016:282:H2V7GAFX2:2:21310:3417:3020/1‑97 (MQ=60)
AGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑‑‑GGGGCCGC‑‑‑‑TTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCAGTG < NB501016:282:H2V7GAFX2:1:21312:4946:10807/151‑1 (MQ=60)
AAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑‑‑GGgggcgcgattcggccccaaattaaaacaccaaagacaataaaataaaaaggtgatatcaatgttcgtcagcaaaaaggttcttagagtggtt > NB501016:282:H2V7GAFX2:1:21105:1392:9561/1‑59 (MQ=60)
GGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑‑‑GGGGCCGC‑‑‑‑TTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGG < NB501016:282:H2V7GAFX2:2:21208:18630:7483/151‑1 (MQ=60)
CAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑‑‑GGggcccccgtgtgggcccaaataaaaacaccaaaacccaaaaaaaaataaagaaaaaggaaaaaaagagagcatgtaggtggtttaagttgaaaatgtaat > NB501016:282:H2V7GAFX2:2:21301:20156:4457/1‑51 (MQ=60)
CAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑‑‑GGGGCCGC‑‑‑‑GTTGGGGCCCCCATTAAAAAAACCAAAGCCAAAACAATAAAAAGGTCATCTGAATTATGGTGTGCATGATtgtggtttgagtggtaaaggtgtt > NB501016:282:H2V7GAFX2:3:21401:17022:10424/1‑127 (MQ=60)
atccCCAGTAACTACAGACGCTTCATTCTCGTGAACCTTCACATTCTTGTGGC‑‑‑CGC‑‑‑‑TTTGCGGCCAGAATTACAAACACCAAAGCAAATACAATCATCAGGTCATCTGAATGATGGTCTTCATGATGGTGCTTTCAGTGGAAATTGTCTTG < NB501016:282:H2V7GAFX2:3:21612:2061:3142/147‑1 (MQ=60)
AAGGCCAGTAACTACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑‑‑GGGGCCGC‑‑‑‑TTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTG < NB501016:282:H2V7GAFX2:2:21309:21417:5885/151‑1 (MQ=60)
AGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑‑‑GGgggcgggttgggggcccaaataaaaaaaccaaaaccaaaaaaaaaaaaaagtgatattaatttttgggttgattatggtgggttttgttgtaaatgtttttggattt > NB501016:282:H2V7GAFX2:1:21311:5110:2253/1‑44 (MQ=60)
GACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑‑‑GGgggcggggtgcggcccccaataaaaaaacccaacccaaaaaaaaaataaggtgatgttaaatattgtgtggaatcatgtgggttgagttgtaaatttgtttggatttggcggg > NB501016:282:H2V7GAFX2:2:11104:12254:5217/1‑38 (MQ=60)
ACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGAGGC‑‑‑CGC‑‑‑‑TTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTGGCATTGGCCTGGT < NB501016:282:H2V7GAFX2:1:11212:11826:4398/151‑1 (MQ=60)
CAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑‑‑GGGGCCGC‑‑‑‑TTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTGGCATTGGCCTGGTA < NB501016:282:H2V7GAFX2:4:11504:21891:6677/151‑1 (MQ=60)
CGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑‑‑GGGGCCGC‑‑‑‑TTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTGGCATTGGCCTGGTAG < NB501016:282:H2V7GAFX2:4:11511:19660:16058/151‑1 (MQ=60)
GCTTCATTCGCGTGAACCTTCACATTCTT‑‑‑GGgggcgcgttgggggccccaataaaaaaaccaaaaccaaaacaaaaaaaaggtgatatgaattatggtgtggaagatggtggtttaattggtaattgtcttgggatttggcaggtagttgt > NB501016:282:H2V7GAFX2:1:21204:21578:16510/1‑31 (MQ=60)
GTGAACCTTCACATTCTT‑‑‑GGGGCCGC‑‑‑‑TTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTGGCATTGGCCTGGTAGTTGCTCTGCGCCTTG < NB501016:282:H2V7GAFX2:1:21308:3287:14283/151‑1 (MQ=60)
CCTTCACATTCTT‑‑‑GGGGCCGC‑‑‑‑TTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTGGCATTGGCCTGGTAGTTGCTCTGCGCCTTGATCAG < NB501016:282:H2V7GAFX2:4:11606:25725:11389/151‑1 (MQ=60)
CATTCTT‑‑‑GGGGCCGC‑‑‑‑TTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTGGCATTGGCCTGGTAGTTGCTCTGCGCCTTGATCAGGTTTAC > NB501016:282:H2V7GAFX2:3:21603:10309:10813/1‑151 (MQ=60)
ATTCTT‑‑‑GGGGCCGC‑‑‑‑TTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTGGCATTGGCCTGGTAGTTGCTCTGCGCCTTGATCAGGTTTACC < NB501016:282:H2V7GAFX2:3:21503:9599:2094/151‑1 (MQ=60)
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GTGGGCCGAACACAGGTAGCGGCCGGTGACCAGGCTTTGCCATTGATAGAACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑‑‑GG‑‑‑CGC‑‑‑‑TTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTGGCATTGGCCTGGTAGTTGCTCTGCGCCTTGATCAGGTTTACC > NC_002947_CJ‑RC/4982139‑4982428
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
