Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A3 F24 I1 R1
|
58 |
74.9 |
3151412 |
98.7% |
3110443 |
147.7 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| JC |
NC_002947_CJ‑RC |
4,982,288 |
+GGC |
intergenic (‑24/+44) |
PP_4387 ← / ← flgE |
hypothetical protein/flagellar hook protein FlgE |
|
| |
seq id |
position |
reads (cov) |
reads (cov) |
score |
skew |
freq |
annotation |
gene |
product |
| * |
? |
NC_002947_CJ‑RC |
= 4982288 | 3 (0.040) | 45 (0.620)
+GGC |
37/288 |
1.7 |
93.9% |
intergenic (‑24/+44) |
PP_4387/flgE |
hypothetical protein/flagellar hook protein FlgE |
| ? | NC_002947_CJ‑RC |
4982289 = |
3 (0.040) | intergenic (‑25/+43) |
PP_4387/flgE |
hypothetical protein/flagellar hook protein FlgE |
GGGCCGAACACAGGTAGCGGCCGGTGACCAGGCTTTGCCATTGATAGAACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947_CJ‑RC/4982141‑4982288
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CGC‑TTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTGGCATTGGCCTGGTAGTTGCTCTGCGCCTTGATCAGGTTTACCAGCTCGC > NC_002947_CJ‑RC/4982289‑4982435
|||
GGGCCGAACACAGGTAGCGGCCGGTGACCAGGCTTTGCCATTGATAGAACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGG > 3:210429/1‑149
AGGTAGCGGCCGGTGACCAGGCGTTGCCATTGATAGAACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGTAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGC‑TTTGCG < 2:339239/149‑1
gccGCGGCCGGTGACCAGGCGTTGCCATTCCACGACCGGGGCGGGGGCCGGGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGCCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGC‑TTTGCGGC < 4:120162/146‑1
GTAGCGGCCGGTGACCAGGCTTTGCCATTGATCGAACGGGGCGGGGGCCGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGC‑TTTGCGGC < 3:198896/149‑1
CGGCCGGTGACCAGGCTTTGCCATTGATAGAACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGGCGG‑GTTGGGGCCCC > 3:45200/1‑148
GGCCGGTGACCAGGCTTTGCCATTGATAGCACGGGGCGGGGCCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGC‑TTTGCGGCCCCAA < 7:147332/149‑1
GTGAGCCGGCTTTCCCATTTATAGTCCGGGGCGGGGGCTGCGGGCGCAGGCAGAACCACCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGC‑TTTGCGGCCCCAATTACA < 4:26487/149‑1
GTGACCAGGCTTTGCCATTGATAGAACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGC‑TTTGCGGCCCCAATTACA < 3:34092/149‑1
ACCAGGCTTTGCCATTGACAGAACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGC‑TTTGCGGCCCCAATTACAAA < 5:117884/148‑1
TGCCATTGATCGAACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGC‑TTTGCGGCCCCAATTACAAACACCAAAGC < 1:236421/148‑1
TGCCATTGATAGCACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGC‑TTTGCGGCCCCAATTACAAACACCAAAG < 1:214567/147‑1
GCCATTGATACACCGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGC‑TTTGCGGCCCCAATTACAAACACCAAAGCCA < 4:343972/149‑1
CATTGATAGAACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGC‑TTTTCGGCCCCAAATAAAAACACCAAAGCCAA > 5:196284/1‑148
TGATAGAACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGC‑TTTGCGGCCCCAATTACAAACACCAAAGCCAATA < 5:304670/147‑1
ATAGAACGGGGCAGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGGCGCGTTGGGGGCCCCAATTA‑AAAAACCCAAGCCAAAACAA > 3:44749/1‑148
TAGAACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGC‑TTTGCGGCCCCAATTACAAACACCAAAGCCAATACAAT < 1:360636/148‑1
CGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGC‑TTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCAT < 7:98234/149‑1
GGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGGCGC‑GTTGGGGGCCCAATTAAAAACACCAAAGCCAAAAAAAAGATAAGGTCATCT > 4:308003/1‑149
GGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGC‑TTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCT < 3:330989/149‑1
GGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGC‑TTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCT < 6:12803/149‑1
CGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGC‑TTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGAT < 8:247802/149‑1
GCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGC‑TTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCT < 8:351455/149‑1
GCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGC‑TTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCAT > 2:135196/1‑149
AGAACCAGCACCAGCAAGGGGAAGAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGC‑TTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGA < 2:68871/149‑1
CAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGC‑TTTTCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATATGAATGTTGGGCTGCATGATGGTG > 2:292332/1‑149
AGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGC‑TTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGC < 5:185359/149‑1
AGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGC‑GTTGCGGGCCCAAATTCAAACACCAAATCCAAAAAAATCATCAGGTCATCTGAATGATGGTGGGCATGATGGTtc > 3:168721/1‑147
CAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGC‑TTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCA < 5:270408/149‑1
CAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGC‑TTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCAGTG > 8:392756/1‑149
AAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGC‑TTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCT < 2:320144/149‑1
GGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGC‑TTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTG < 6:124573/149‑1
GGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGC‑TTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTG < 2:179371/149‑1
GGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGC‑TTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTACTTTCAGTGGAAATGGTCTTG < 4:202168/149‑1
GCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGC‑TTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTGG < 4:220920/149‑1
CCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGC‑TTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTGGC < 5:173935/149‑1
CAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGC‑GTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTGATCTGAATGATGGTCTGCATGATGGTGCTTTGAGTGGAAATGGTCTTGGCA > 6:202119/1‑149
ATTCGCGTGAACCTTCACATTCTTGGGGCCGC‑TTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTGGCATTGGCCTGGTAGTTGCTCT < 1:182245/149‑1
CGCGTGAACCTTCACATTCTTGGGGCCGC‑TTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTGGCATTGGCCTGGTAGTTGCTCTGC < 2:156507/148‑1
TGAACCTTCACATTCTTGGGGCCGC‑TTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTGGCATTGGCCTGGTAGTTGCTCTGCGCCTT < 5:246893/149‑1
ATTCTTGGGGCCGC‑TTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATGATCAGGTCATCTGAATGATGGGCTGCATGATGGGGGTTTCAGTGGAAATGGTCTTGGCATTGGCCTGGTAGTTGCTCGGCGGCTTGGTCAGGGTTA > 4:153010/1‑149
ATTCTTGGGGCCGC‑TTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTGAGTGGAAATGGTCTTGGGATTGGCCTGGTAGTTGCTCTGCGCCTTGATCAGGTTTA > 6:24922/1‑149
ATTCTTGGGGCCGC‑TTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCGTTCAGTGGAAATGGTCTTGGCATTGGCCTGGTAGTTGCTCTGCGCCTTGATCAGGTTT > 1:254743/1‑148
TTCTTGGGGCCGC‑TTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTGGCATTGGCCTGGTAGTTGCTCTGCGCCTTGATCAGGTTTAC < 4:44749/149‑1
TTCTTGGGGCCGC‑TTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTGGCATTGGCCTGGTAGTTGCTCTGCGCCTTGATCAGGTTTAC < 6:35188/149‑1
GGGGCCGC‑TTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTGGCATTGGCCTGGTAGTTGCTCTGCGCCTTGATCAGGTTTACCAGC < 1:135196/148‑1
GGGGCCGC‑TTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTGGCATTGGCCTGGTAGTTGCTCTGCGCCTTGATCAGGTTTACCAG < 4:210429/147‑1
GCCGC‑TTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTGGCATTGGCCTGGTAGTTGCTCTGCGCCTTGATCAGGTTTACCAGCTCGC > 3:101976/1‑149
|||
GGGCCGAACACAGGTAGCGGCCGGTGACCAGGCTTTGCCATTGATAGAACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947_CJ‑RC/4982141‑4982288
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CGC‑TTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTGGCATTGGCCTGGTAGTTGCTCTGCGCCTTGATCAGGTTTACCAGCTCGC > NC_002947_CJ‑RC/4982289‑4982435
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
|---|
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
TGGGCCGAACACAGGTAGCGGCCGGTGACCAGGCTTTGCCATTGATAGAACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCT‑‑‑T‑‑‑GG‑‑‑CGC‑TTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTGGCATTGGCCTGGTAGTTGCTCTGCGCCTTGATCAGGTTTA > NC_002947_CJ‑RC/4982140‑4982426
|
TGGGCCGAACACAGGTAGCGGCCGGTGACCAGGCTTTGCCATTGATAGAACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCT‑‑‑T‑‑‑GG‑‑‑GG > NB501016:282:H2V7GAFX2:2:21102:4072:13001/1‑151 (MQ=60)
gctgctcggtggacgtttgctgctggggCATTGATAGAACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCTGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCT‑‑‑T‑‑‑GGGGCCGC‑TTTGCG < NB501016:282:H2V7GAFX2:3:11501:11174:9891/122‑1 (MQ=60)
GGTAGCGGCCGGTGACCAGGCTTTGCCATTGATCGAACGGGGCGGGGGCCGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCT‑‑‑T‑‑‑GGGGCCGC‑TTTGCGGCC < NB501016:282:H2V7GAFX2:2:11312:18015:9692/151‑1 (MQ=60)
GCGGCCGGTGACCAGGCTTTGCCATTGATAGAACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCT‑‑‑T‑‑‑GGgggcgggttggggcccca > NB501016:282:H2V7GAFX2:2:11109:7505:8934/1‑132 (MQ=60)
CGGCCGGTGACCAGGCTTTGCCATTGATAGCACGGGGCGGGGCCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCT‑‑‑T‑‑‑GGGGCCGC‑TTTGCGGCCCCAAT < NB501016:282:H2V7GAFX2:4:11602:3258:14444/151‑1 (MQ=60)
gggggttacctgggttgccctttgttagacgggggcggccccaggGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCT‑‑‑T‑‑‑GGGGCCGC‑TTTGCGGCCCCAATTA < NB501016:282:H2V7GAFX2:4:11408:13023:17555/106‑1 (MQ=60)
GGTGACCAGGCTTTCCCATTGATAGAACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGCAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCT‑‑‑T‑‑‑GGGGCCGC‑TTTGCGGCCCCAATTACAA < NB501016:282:H2V7GAFX2:2:11107:23101:7590/151‑1 (MQ=60)
GACCATGCTTTGCCATTGACAGAACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCT‑‑‑T‑‑‑GGGGCCGC‑TTTGCGGCCCCAATTACAAAC < NB501016:282:H2V7GAFX2:3:11510:9321:13180/150‑1 (MQ=60)
TTGCCATTGATCGAACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCT‑‑‑T‑‑‑GGGGCCGC‑TTTGCGGCCCCAATTACAAACACCAAAGCC < NB501016:282:H2V7GAFX2:1:21106:1554:9160/150‑1 (MQ=60)
TTGCCATTGATAGCACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCT‑‑‑T‑‑‑GGGGCCGC‑TTTGCGGCCCCAATTACAAACACCAAAGC < NB501016:282:H2V7GAFX2:1:21102:24511:12295/149‑1 (MQ=60)
ccactggaatacgcgccaccgccgagtacaggcacaggctctgggtggCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCT‑‑‑T‑‑‑GGGGCCGC‑TTTGCGGCCCCAATTACAAACACCAAAGCCAATA < NB501016:282:H2V7GAFX2:1:11306:12755:12921/103‑1 (MQ=60)
CCATTGATAGAACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCT‑‑‑T‑‑‑GGGGCCGC‑TTTTCGGCCCCAAATAAAAACACCAAAGCCAAT > NB501016:282:H2V7GAFX2:3:11611:7426:15302/1‑150 (MQ=60)
CCATTGATAGAACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGAAACGACAGCCGCTTCATTAGCGTGAACATTCACATTCTTTCT‑‑‑GG‑‑‑CGC‑TTTGCGGgccgaaataaaaaaaccaaatgaaaa > NB501016:282:H2V7GAFX2:3:11503:9942:5321/1‑124 (MQ=60)
TTGATAGAACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCT‑‑‑T‑‑‑GGGGCCGC‑TTTGCGGCCCCAATTACAAACACCAAAGCCAATAC < NB501016:282:H2V7GAFX2:3:21508:25492:18542/149‑1 (MQ=60)
GATAGAACGGGGCAGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCT‑‑‑T‑‑‑GGgggcgcgttgggggccccaattaaaaaacccaagccaaaacaat > NB501016:282:H2V7GAFX2:2:11109:11593:7538/1‑106 (MQ=60)
ATAGAACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCT‑‑‑T‑‑‑GGGGCCGC‑TTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATC < NB501016:282:H2V7GAFX2:1:21306:12413:6387/150‑1 (MQ=60)
GCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCT‑‑‑T‑‑‑GGGGCCGC‑TTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATC < NB501016:282:H2V7GAFX2:4:11505:19733:19425/151‑1 (MQ=60)
GGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCT‑‑‑T‑‑‑GGGGCCGC‑TTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTG < NB501016:282:H2V7GAFX2:2:21304:18137:2751/151‑1 (MQ=60)
CAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCT‑‑‑T‑‑‑GGggccgcgttgcgggccccaataaaaacacccaagccaaaaaaaaaataagggcatctgaatgt > NB501016:282:H2V7GAFX2:2:21311:19660:3138/1‑88 (MQ=60)
GGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCT‑‑‑T‑‑‑GGgggcgcgttgaggcccccaataaaaaaacccaacccaaaacaataaaaaagtgctctgcatttttgggtg > NB501016:282:H2V7GAFX2:3:11407:2455:12893/1‑81 (MQ=60)
AGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCT‑‑‑T‑‑‑GGggccgcgttggggcccccaattaaaacaccaaacccaaaaaaaaaataaagtcatcagaattaaggtgagcatgatt > NB501016:282:H2V7GAFX2:2:11208:6821:4703/1‑74 (MQ=60)
CAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCT‑‑‑T‑‑‑GGGGCCGC‑TTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCT < NB501016:282:H2V7GAFX2:3:11609:16485:18669/151‑1 (MQ=60)
CAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCT‑‑‑T‑‑‑GGGGCCGC‑GTTGCGGGCCCAAATTCAAACACCAAATCCAAAAAAATCATCAGGTCATCTGAATGATGGTGGGCATGATGGTTCT > NB501016:282:H2V7GAFX2:2:11307:18415:8500/1‑151 (MQ=60)
CCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCT‑‑‑T‑‑‑GGGGCCGC‑TTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCAG < NB501016:282:H2V7GAFX2:3:21502:21470:12015/151‑1 (MQ=60)
CCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCT‑‑‑T‑‑‑GGGGCCGC‑GTTGCGGCCCCAATTAagaaaaccacagacaaaaaaataataaggtcatatgaattatggtgtggatgatggtgggttgat > NB501016:282:H2V7GAFX2:3:11610:1925:6824/1‑86 (MQ=60)
AGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCT‑‑‑T‑‑‑GGggccgcgttggggccccaaattcaaacaccagcgcccatacaataaacaggggatgtggatgatggggtgcatgatggtgctttgagtggga > NB501016:282:H2V7GAFX2:4:11511:18537:16112/1‑58 (MQ=60)
GGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCT‑‑‑T‑‑‑GGGGCCGC‑GTTGCGGGCCCAAATAAAAACACCAAAGCCAATACAAAAATCAGGGCATCTGAATTATGGTCTGCATGATGGTGGTTTAAGGGGAAAT > NB501016:282:H2V7GAFX2:3:21606:6175:1091/1‑151 (MQ=60)
GCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCT‑‑‑T‑‑‑GGGGCCGC‑TTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTGGCA < NB501016:282:H2V7GAFX2:3:11607:10226:20391/151‑1 (MQ=60)
GCCGCTTCATTCGCGTGAACCTTCACATTCT‑‑‑TGGGGG‑‑‑CGCGTTTGGGGCCCCAA‑TAAAAAAACCAAAGCCAAAAAAAACATCAGGTGATATGAATGATGGTGTGGATGATGGggggttgagtgggaattgtgtttggatttggctggtagt > NB501016:282:H2V7GAFX2:2:11212:25868:12527/1‑112 (MQ=22)
CATTCGCGTGAACCTTCACATTCT‑‑‑T‑‑‑GGGGCCGC‑TTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTGGCATTGGCCTGGTAGTTGCTCTG < NB501016:282:H2V7GAFX2:1:11308:6813:13603/151‑1 (MQ=60)
GTGAACCTTCACATTCT‑‑‑T‑‑‑GGGGCCGC‑TTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTGGCATTGGCCTGGTAGTTGCTCTGCGCCTTG < NB501016:282:H2V7GAFX2:3:21409:4674:19454/151‑1 (MQ=60)
CATTCT‑‑‑T‑‑‑GGGGCCGC‑TTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCGTTCAGTGGAAATGGTCTTGGCATTGGCCTGGTAGTTGCTCTGCGCCTTGATCAGGTTTA > NB501016:282:H2V7GAFX2:1:21109:15608:15606/1‑150 (MQ=60)
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TGGGCCGAACACAGGTAGCGGCCGGTGACCAGGCTTTGCCATTGATAGAACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCT‑‑‑T‑‑‑GG‑‑‑CGC‑TTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTGGCATTGGCCTGGTAGTTGCTCTGCGCCTTGATCAGGTTTA > NC_002947_CJ‑RC/4982140‑4982426
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
