Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A5 F13 I0 R1
|
213 |
60.4 |
2554362 |
98.6% |
2518600 |
147.1 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| JC |
NC_002947_CJ‑RC |
4,982,288 |
+GGC |
93.2% |
intergenic (‑24/+44) |
PP_4387 ← / ← flgE |
hypothetical protein/flagellar hook protein FlgE |
|
| |
seq id |
position |
reads (cov) |
reads (cov) |
score |
skew |
freq |
annotation |
gene |
product |
| * |
? |
NC_002947_CJ‑RC |
= 4982288 | 2 (0.040) | 27 (0.500)
+GGC |
25/266 |
NT |
93.2% |
intergenic (‑24/+44) |
PP_4387/flgE |
hypothetical protein/flagellar hook protein FlgE |
| ? | NC_002947_CJ‑RC |
4982289 = |
2 (0.040) | intergenic (‑25/+43) |
PP_4387/flgE |
hypothetical protein/flagellar hook protein FlgE |
GGCCGAACACAGGTAGCGGCCGGTGACCAGGCTTTGCCATTGATAGAACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947_CJ‑RC/4982142‑4982288
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CGCTTTG‑CGG‑CCCCAATTACAAACACCAAA‑GCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTGGCATTGGCCTGGTAGTTGCTCTGCGCCTTGATCAGGTTTACCAGCTCGC > NC_002947_CJ‑RC/4982289‑4982435
|||
GGCCGAACACAGGTAGCGGCCGGTGACCAGGCTTTGCCATTGATAGAACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGG > 7:261560/1‑149
CGAACACAGGTAGCGGCCGGTGACCAGGCTTTGCCATTGATAGAACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCG > 7:181981/1‑149
GAACACAGGTAGCGGCCGGTGACCAGGCTTTGCCATTGATAGAACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGC > 1:176072/1‑149
GAACACAGGTAGCGGCCGGTGACCAGGCTTTGCCATTGATAGAACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGC < 6:78849/149‑1
GAACACAGGTAGCGGCCGGTGACCAGGCTTTGCCATTGATAGAACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGC > 3:137115/1‑149
AGGTAGCGGCCGGTGACCAGGCTTTGCCATTGATAGAACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGCGTTtgg > 2:305886/1‑146
GTAGCGGCCGGGGACCAGGCTTTGCCATTGATAGAACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGCTTTG‑CGG‑C < 7:205031/149‑1
GTGACCAGGCTTTGCCATTGATAGAACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGGCGCGTTG‑CGG‑GCCCAAATAa > 8:297593/1‑147
TGACCAGGCTTTGCCATTGATAGAACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGCTTTG‑CGG‑CCCCAATTACAA < 2:194436/149‑1
ACCAGGCTTTGCCATTGATAGAACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAATGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGCTTTG‑CGG‑CCCCAATTACAAA < 8:281596/148‑1
GGCTTTGCCATTGATAGAACGGGGCGGGTGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGCTTTG‑CGG‑CCCCAATTACAAACACC > 5:316704/1‑148
CTTTGCCATTGATAGAACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGCTTTG‑CGG‑CCCCAATTACAAACACCAAA < 3:233333/149‑1
ATTGATAGAACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGGCGCGTTT‑CGG‑GCCCAATTACAAAAAACAAACGCCAA > 1:182489/1‑148
ATTGATAGAACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGCGTTG‑GGG‑CCCCAATTAAAAACACCAAA‑GCCAAa > 8:152460/1‑147
AACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCCCCATGACGG‑GCCAAATT‑CAAACCCCAAA‑GACAATACAAACAa > 3:149013/1‑147
ACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGCGTTG‑CGGCCCCCAATTA‑AAACACCAAA‑GCCAATAAAATaaaca > 5:129011/1‑144
CGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGCTTTG‑CGG‑CCCCAATTACAAACACCAAA‑GCCAATACAATCATCAG < 4:137115/149‑1
GCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGCTTTG‑GGG‑CCCCAATTACAAACACCAAA‑GCCAATACAATCATGAGGTga > 4:253422/1‑147
ggAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACAATCTTGGGGCCGCTTTG‑CGG‑CCCCAATTACAAACACCAAA‑GCCAATACAATCATCAGGTCATCTGAA < 3:56408/147‑1
GGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGCTTTG‑CGG‑CCCCAATTACAAACACCAAA‑GCCAATACAATCATCAGGTCATCTGAATGATG < 3:253422/149‑1
GGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGCTTTG‑CGG‑CCCCAATTACAAACACCAAA‑GCCAATACAATCATCAGGTCATCTGAATGATG < 8:261560/149‑1
GGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGCTTTG‑CGG‑CCCCAATTACAAACACCAAA‑GCCAATACAATCATCAGGTCATCTGAATGATGGT < 2:196570/149‑1
AGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGCTTTG‑CGG‑CCCCAATTACAAACACCAAA‑GCCAATACAATCATCAGGTCATCTGAATGATGGTCTGC < 7:152460/149‑1
GCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCCCGTTG‑GGG‑CCCCAATTAAAAACCCCAAA‑GCCAAAAAAATAAACAGGTGATCTGAATGATGGTATGGAT > 4:261934/1‑149
CCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGCTTTG‑CGG‑CCCCAATTACAAACACCAAA‑GCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGT > 6:308044/1‑149
AGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGGGTTG‑CGG‑CCCCAAATACAAAAACCAAA‑GCCCATAAAATCATCAGGTCATGTGAATGATGGGCGGGATGATGGTGg > 6:262635/1‑148
GCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGCGTTG‑GGG‑CCCCAATTAAAAACACCAAA‑ACCAATAAAATAAACAGGTGATATGAATTATGGTGTGCATGATGGTGgt > 3:105705/1‑147
GGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGCTTTG‑CGG‑CCCCAATTACAAACACCAAA‑GCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAAT < 4:52984/149‑1
CCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGCTTTG‑CGG‑CCCCAATTACAAACACCAAA‑GCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTGGCATTGGCCTGGTAG < 2:105145/149‑1
GCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGCTTTG‑CGG‑CCCCAATTACAAACACCAAA‑GCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTGGCATTGGCCTGGTAGTT < 2:181581/149‑1
CGCGTGAACCTTCACATTCTTGGGGCCGCTTTG‑CGG‑CCCCAATTACAAACACCAAA‑GCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTGGCATTGGCCTGGTAGTTGCTCTGC < 1:138964/148‑1
CTTCACATTCTTGGGGCCGCTTTG‑CGG‑CCCCAATTACAAACACCAAA‑GCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTGGCATTGGCCTGGTAGTTGCTCTGCGCCTTGATCA < 1:305886/149‑1
TTGGGGCCGCTTTG‑CGG‑CCCCAATTACAAACACCAAA‑GCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTGGCATTGGCCTGGTAGTTGCTCTGCGCCTTGATCAGGTTTACCAG > 1:182665/1‑149
TTGGGGCCGCTTTG‑CGG‑CCCCAATTACAAACACCAAA‑GCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTGGCATTGGCCTGGTAGTTGCTCTGCGCCTTGATCAGGTTTACCAG > 1:178083/1‑149
TTGGGGCCGCTTTG‑CGG‑CCCCAATTACAAACACCAAA‑GCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTGGCATTGGCCTGGTAGTTGCTCTGCGCCTTGATCAGGTTTACCAG > 8:7451/1‑149
TTGGGGCCGCAAAG‑CGG‑CCCCAATTACAAACACCAAA‑GCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTGGCATTGGCCTGGTAGTTGCTCTGCGCCTTGATCAGGTTTACCAG > 1:292438/1‑149
GGGGCCGCTTTG‑CGG‑CCCCAATTACAAACACCAAA‑GCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTGGCATTGGCCTGGTAGTTGCTCTGCGCCTTGATCAGGTTTACCAGC < 8:298447/148‑1
GGGGCCGCTTTG‑CGG‑CCCCAATTACAAACACCAAA‑GCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTGGCATTGGCCTGGTAGTTGCTCTGCGCCTTGATCAGGTTTACCA < 5:30194/146‑1
GGGCCGCTTTG‑CGG‑CCCCAATTACAAACACCAAA‑GCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTGGCATTGGCCTGGTAGTTGCTCTGCGCCTTGATCAGGTTTACCAGCT < 8:181981/148‑1
GCCGCTTTG‑CGG‑CCCCAATTACAAACACCAAA‑GCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTGGCATTGGCCTGGTAGTTGCTCTGCGCCTTGATCAGGTTTACCAGCTCGC > 8:287752/1‑149
|||
GGCCGAACACAGGTAGCGGCCGGTGACCAGGCTTTGCCATTGATAGAACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947_CJ‑RC/4982142‑4982288
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CGCTTTG‑CGG‑CCCCAATTACAAACACCAAA‑GCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTGGCATTGGCCTGGTAGTTGCTCTGCGCCTTGATCAGGTTTACCAGCTCGC > NC_002947_CJ‑RC/4982289‑4982435
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
|---|
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GGGCCGAACACAGGTAGCGGCCGGTGACCAGGCTTTGCCATTGATAGAACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGG‑‑‑CGCTTTGCGG‑CCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTGGCATTGGCCTGGTAGTTGCTCTGCGCCTTGATCAGGTTTACCAGC > NC_002947_CJ‑RC/4982141‑4982431
|
GGGCCGAACACAGGTAGCGGCCGGTGACCAGGCTTTGCCATTGATAGAACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGggg > NB501016:282:H2V7GAFX2:4:21510:17422:2912/1‑148 (MQ=60)
CCGAACACAGGTAGCGGCCGGTGACCAGGCTTTGCCATTGATAGAACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGggccgc > NB501016:282:H2V7GAFX2:4:21404:22857:19232/1‑145 (MQ=60)
CGAACACAGGTAGCGGCCGGTGACCAGGCTTTGCCATTGATAGAACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGggccgcg > NB501016:282:H2V7GAFX2:1:21103:17528:8295/1‑144 (MQ=60)
CGAACACAGGTAGCGGCCGGTGACCAGGCTTTGCCATTGATAGAACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGggccgcg > NB501016:282:H2V7GAFX2:2:11307:3798:13715/1‑144 (MQ=60)
GGTAGCGGCCGGGGACCAGGCTTTGCCATTGATAGAACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGCTTTGCGG‑CC < NB501016:282:H2V7GAFX2:4:21409:2223:18035/151‑1 (MQ=60)
AGGCTTTGCCATTGATAGAACGGGGCGGGTGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGCTTTGCGG‑CCCCAATTACAAACACCA > NB501016:282:H2V7GAFX2:3:21611:5463:18739/1‑150 (MQ=60)
GCTTTGCCATTGATAGAACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGCTTTGCGG‑CCCCAATTACAAACACCAAAG < NB501016:282:H2V7GAFX2:2:21207:23985:13985/151‑1 (MQ=60)
CATTGATAGAACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGgggcgcgtttcgggcccaattacaaaaaacaaacgccaaa > NB501016:282:H2V7GAFX2:1:21104:11951:15640/1‑110 (MQ=60)
GAACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGggcccccatgacgggccaaattcaaaccccaaagacaatacaaacaaa > NB501016:282:H2V7GAFX2:2:11310:12437:4075/1‑102 (MQ=60)
AACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGCGTTGCGGCCCCCAATTA‑AAACACCAAAGCCAATAaaataaacac > NB501016:282:H2V7GAFX2:3:11605:10548:8041/1‑141 (MQ=60)
GGGAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACAATCTTGGGGCCGCTTTGCGG‑CCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAAT < NB501016:282:H2V7GAFX2:2:11201:12812:19490/151‑1 (MQ=60)
CGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGCTTTGCGG‑CCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGG < NB501016:282:H2V7GAFX2:2:21212:6691:8186/151‑1 (MQ=60)
CAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGCTTTGCGG‑CCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCA < NB501016:282:H2V7GAFX2:4:11610:20597:8253/151‑1 (MQ=60)
GGCAGAACCAGCACCAGCAAGGGGAACAAGGACAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGCTTTGGGG‑CCCCCATTACAAAAACCAAAGCCcataaaaagatcaggtcaacttgattgatgtgtggc > NB501016:282:H2V7GAFX2:4:11502:13726:18462/1‑113 (MQ=60)
AGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGCGTTGGGG‑CCCCAATTAAAAACACCAAAACCAATAAAATAAACAGGTGATATGAATTATGGTGTGCATGATGGTGGTT > NB501016:282:H2V7GAFX2:2:11212:18278:19242/1‑151 (MQ=60)
GGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGggccgcgttggggccccaaataaaaaaaccaaaaccaaaaaaaaaataaggtgatatgtattattgtgtggatgatggtggtttgagtggaaa > NB501016:282:H2V7GAFX2:4:11606:10659:18772/1‑57 (MQ=60)
CAAGGCCAGTAACGACAGCCGCTTCAGTCGAGTGAACCTTCAAATTCTTGGgggccggttgaggcccccaaaaaaaaaaacccctgcaaaagcatcaaaaccgcctccttcttaatggcgtcaacaaggtgaatacagtcgcaatgggtat > NB501016:282:H2V7GAFX2:3:11410:4970:2039/1‑51 (MQ=47)
GGCCAGTAACGACAGCCGCTTCATTCGCGTCAACCTTCACATTCTTGGggccggcatacggggcacaaaaaaaaaaacaaacccaaaacaataataaagtcaaaaaaattatgggaggcaattttgggcgttaaatagaaaaagtcatggc > NB501016:282:H2V7GAFX2:4:11406:14372:3814/1‑48 (MQ=60)
GCTTCATTCGCGTGAACCTTCACATTCTTGGgggcgcgttgggggccccaataaaaaaaccaaagccaaaaaaaaaataaagtaatatgaattatggtgtggatgttggtgggttaagtggaaattgtgttgggatttggcgggttgtttg > NB501016:282:H2V7GAFX2:2:21309:8315:18094/1‑31 (MQ=60)
TCGCGTGAACCTTCACATTCTTGGGGCCGCTTTGCGG‑CCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTGGCATTGGCCTGGTAGTTGCTCTGCG < NB501016:282:H2V7GAFX2:1:11307:10226:2417/150‑1 (MQ=60)
CCTTCACATTCTTGGGGCCGCTTTGCGG‑CCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTGGCATTGGCCTGGTAGTTGCTCTGCGCCTTGATCAG < NB501016:282:H2V7GAFX2:1:21309:7615:13750/151‑1 (MQ=60)
CTTGGGGCCGCTTTGCGG‑CCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTGGCATTGGCCTGGTAGTTGCTCTGCGCCTTGATCAGGTTTACCAGC > NB501016:282:H2V7GAFX2:1:21104:26616:16371/1‑151 (MQ=60)
CTTGGGGCCGCTTTGCGG‑CCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTGGCATTGGCCTGGTAGTTGCTCTGCGCCTTGATCAGGTTTACCAGC > NB501016:282:H2V7GAFX2:1:21103:1192:16368/1‑151 (MQ=60)
|
GGGCCGAACACAGGTAGCGGCCGGTGACCAGGCTTTGCCATTGATAGAACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGG‑‑‑CGCTTTGCGG‑CCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTGGCATTGGCCTGGTAGTTGCTCTGCGCCTTGATCAGGTTTACCAGC > NC_002947_CJ‑RC/4982141‑4982431
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
