Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A4 F58 I1 R1 60 66.0 2910360 98.3% 2860883 145.7

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_002947_CJ‑RC 1,070,248 +GA intergenic (+48/+94) aroP‑I → / ← PP_0928 aromatic amino acid transport protein/K+‑dependent Na+/Ca+ exchanger‑like protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_002947_CJ‑RC1,070,2461.G77.3% 54.3 / 11.4 24intergenic (+46/+96)aroP‑I/PP_0928aromatic amino acid transport protein/K+‑dependent Na+/Ca+ exchanger‑like protein
Reads supporting (aligned to +/- strand):  ref base . (2/3);  new base G (5/12);  total (8/16)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
*NC_002947_CJ‑RC1,070,2462.A79.2% 58.0 / 11.9 24intergenic (+46/+96)aroP‑I/PP_0928aromatic amino acid transport protein/K+‑dependent Na+/Ca+ exchanger‑like protein
Reads supporting (aligned to +/- strand):  ref base . (2/3);  new base A (6/13);  total (8/16)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

CTGACGCCGCCGATTCGCATCTCGGTAATGCTGATCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑TGT‑‑GA‑‑TCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAATGCTGCCTCCGCCAAGCACGCACAGTGGTGTA  >  NC_002947_CJ‑RC/1070099‑1070377
                                                                                                                                                      ||                                                                                                                                     
cTGACGCCGCCGATTCGCATCTCGGTAATGCTGATCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCTGCTCC‑‑tgt                                                                                                                                         <  4:100918/148‑1 (MQ=255)
  gACGCCGCCGATTCGCATCTCGGTAATGCTGATCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTAAGGTTTTCGGCGCC‑‑tgt                                                                                                                                         >  5:134071/1‑146 (MQ=255)
   aCGCCGCCGATTCGCATCTCGGTAATGCTGATCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTAAGGTTTTCGGCGCC‑‑TGT‑‑Gag                                                                                                                                    <  6:134071/148‑2 (MQ=255)
      ccgccgATTCGCATCTCGGTAATGCTGATCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑TTT‑‑Gaga                                                                                                                                   >  1:51646/1‑144 (MQ=255)
      ccgccgATTCGCATCTCGGTAATGCTGATCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑TGT‑‑Gagatc                                                                                                                                 >  8:186334/1‑144 (MQ=255)
                gCATCTCGGTAATGCTGATCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑TGTGAGA‑‑TCGAGCGCcgcg                                                                                                                       <  5:338928/148‑1 (MQ=255)
                 cATCTCGGTAATGCTGATCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑TGTGAGA‑‑TCGAGCGCcgcgcg                                                                                                                     <  8:250825/149‑1 (MQ=255)
                       ggTAATGCTGATCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑TGTGAGA‑‑TCGAGCGCCGCgcgg                                                                                                                    <  1:291400/144‑1 (MQ=255)
                           aTGCTGATCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGTGCC‑‑TGTGAGA‑‑TCGAGCGCCGCGCGGGCGGCGCt                                                                                                            <  1:34350/148‑1 (MQ=255)
                           aTGCTGATCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑TGTGAGA‑‑TCGAGCGCCGCGCGGGCGGCGCTc                                                                                                           <  7:253900/149‑1 (MQ=255)
                            tGCTGATCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑TGTGAGA‑‑TCGAGCGCCGCGCGGGCGGCGCTc                                                                                                           <  3:31649/148‑1 (MQ=255)
                             gCTGATCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑AGTTAGA‑‑TAGATCGCCCCgcggggggagggggc                                                                                                         >  8:133261/1‑142 (MQ=255)
                                 aTCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑TGTGAGA‑‑TCGAGCGCCGCGCGGGCGGCGCTCGAt                                                                                                        <  5:264543/146‑1 (MQ=255)
                                     cGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑TGTGAGA‑‑TAGAGCGCCGCGCGGGGGGCGCTCGATCTca                                                                                                    >  2:26056/1‑146 (MQ=255)
                                            gATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑TGTGAGA‑‑TAGAGCGCCGCGCGGGCGGCGCTCGCTCGCGCACGCGAt                                                                                            >  6:266667/1‑147 (MQ=38)
                                                       tgtgGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑TGTGAGA‑‑TAGAGCGCCGCGCGGGCGGCGCGCGATATCACAGGCGATGAAAGCCaaaaag                                                                               >  7:67560/1‑147 (MQ=38)
                                                                  ttCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑TGTGAGA‑‑TCGAGCGCCGCCCGCGCGgcgc                                                                                                             >  2:168388/1‑108 (MQ=37)
                                                                  ttCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑TGTGAGA‑‑TCGAGCGCCGCCCGCGCGgcgc                                                                                                             <  1:168388/108‑1 (MQ=37)
                                                                            agaagGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑TGTGAGA‑‑TCGAGCGCCGCGCGGGTGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGAc                                                          <  7:186334/149‑1 (MQ=255)
                                                                                        aGGCCATGGGCGGATCGGGTTTGTTCGTATGGGGTATGCCGTTCGGTTTTCGGCCCC‑‑TGT‑‑GAGCTCGAGCGCCGCGCGGGCGGCGCGCTATCTCACAGGCGATGAAAGCCTAAGGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCtt                                               <  4:300091/148‑1 (MQ=37)
                                                                                          cccACGGGCTGAGCGGGTTTGTCCGTACGGGGTATCCCGTTTGGTTTTCGGCCCC‑‑TGTCACA‑‑CCGCGCCCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTcc                                             <  4:203831/147‑1 (MQ=37)
                                                                                                      tCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑TGTGAGA‑‑TCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCGAAAGGCATGCGTCTGGCGGCCCTGCCGCGTTCCCCGTGCATGCCCCTCAAt                                 >  2:244303/1‑148 (MQ=37)
                                                                                                        gggTTTGTTCTTATGGGGTTTGCCGTTAGGTTTTCGGCGCCGGTCT‑‑GC‑‑TCGAGCGCCGCGCGGGGGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAAtgc                               <  4:224136/148‑1 (MQ=255)
                                                                                                        gggTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑TGTGAGA‑‑TCGAGCGCCGCGCGGGCGGCGCTGGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAAtgct                              <  7:165665/149‑1 (MQ=255)
                                                                                                         ggTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑TGTGAGA‑‑TCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAAtgct                              <  1:26056/148‑1 (MQ=255)
                                                                                                                                     gTTTTCGGCGCC‑‑TGTGAGA‑‑TCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAATGCTGCCTCCGCCAAGCACGCACAGTGGTGTa  <  1:83993/148‑1 (MQ=255)
                                                                                                                                                      ||                                                                                                                                     
CTGACGCCGCCGATTCGCATCTCGGTAATGCTGATCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑TGT‑‑GA‑‑TCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAATGCTGCCTCCGCCAAGCACGCACAGTGGTGTA  >  NC_002947_CJ‑RC/1070099‑1070377

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 

GATK/CNVnator alignment

BRESEQ :: bam2aln output
CGCATCTCGGTAATGCTGATCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCCT‑‑GT‑‑GA‑‑TCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAATGCTGCCTCCGCCAAGCACGCACAGTGGTGTACAGCAACACCGTAGCGAGCAC  >  NC_002947_CJ‑RC/1070114‑1070398
                                                                                                                                          |                                                                                                                                                        
CGCATCTCGGTAATGCTGATCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCCT‑‑GTGAGA‑‑TCGAGCGCCGCGCG                                                                                                                                          <  NB501016:282:H2V7GAFX2:3:21607:19364:11400/151‑1 (MQ=60)
       CGGTAATGCTGATCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCCT‑‑GTGAGA‑‑TCGAGCGCCGCGCGGGC                                                                                                                                       <  NB501016:282:H2V7GAFX2:1:21209:24773:8005/147‑1 (MQ=60)
           AATGCTGATCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGTGCCT‑‑GTGAGA‑‑TCGAGCGCCGCGCGGGCGGCGCTCG                                                                                                                               <  NB501016:282:H2V7GAFX2:1:11107:19454:5577/151‑1 (MQ=60)
           AATGCTGATCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCCT‑‑GTGAGA‑‑TCGAGCGCCGCGCGGGCGGCGCTCG                                                                                                                               <  NB501016:282:H2V7GAFX2:4:21501:7000:15853/151‑1 (MQ=60)
            ATGCTGATCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCCT‑‑GTGAGA‑‑TCGAGCGCCGCGCGGGCGGCGCTCGA                                                                                                                              <  NB501016:282:H2V7GAFX2:2:11107:24993:8907/151‑1 (MQ=60)
                 GATCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCCT‑‑GTGAGA‑‑TCGAGCGCCGCGCGGGCGGCGCTCGATCT                                                                                                                           <  NB501016:282:H2V7GAFX2:3:21505:20636:6098/149‑1 (MQ=60)
                                       CTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCCT‑‑GTGAGA‑‑TAGAGCGCCGCGCGGGCGGCGCGCGATATCACAGGCGATGAAAGCCaaaaagg                                                                                                   >  NB501016:282:H2V7GAFX2:4:11501:23240:15360/1‑144 (MQ=60)
                                          gggggggctttcacgcggaccAAGGCGCGCCAGGCCAAGGGCTGAGCGGGTTTGTGCGTACGGGGTAGGCCGTTAGGTTTTCGGCGCCTGGGA‑‑GA‑‑CCGCCCGCCGCGCGGGCGGCGCGCGAGCTCACAGGCGATGAAAGCCTAAAGGCATG                                                                                                <  NB501016:282:H2V7GAFX2:4:11610:24954:12014/130‑1 (MQ=60)
                                                gcttccaaccgcaccacgccgcgcccgcccacgggctgccCGGGTTTGTTCGAACGGGGTAGGCGGTAAGGTTTTCGGCGCCT‑‑GTGAGA‑‑CCGAGCGCCGCGCGGGCGGCGCGCCATCGCACAGGCGATGAAAGCCTAAAGGCATGCGTCTG                                                                                          <  NB501016:282:H2V7GAFX2:1:11107:8201:14034/111‑1 (MQ=35)
                                                 CTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCCT‑‑GTGAGA‑‑TCGAGCGCCGCCCGCGCGGCGCTC                                                                                                                                <  NB501016:282:H2V7GAFX2:1:11309:13417:2198/112‑1 (MQ=60)
                                                         CTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCCA‑‑GT‑‑GA‑‑Tatatggccccccccgggggggggcaggggacacccgcggggaaagccaaaaaacccaccggaggggcccccc                                                                               >  NB501016:282:H2V7GAFX2:3:11505:20935:4101/1‑79 (MQ=60)
                                                            AAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCCT‑‑GTGAGA‑‑TCGAGCGCCGCGCGGGTGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACG                                                                              <  NB501016:282:H2V7GAFX2:4:11612:9690:16697/151‑1 (MQ=60)
                                                                      CCCAGCCCAAGGGCTGAGCGGGTTTGTCCGTATGGGGTATCCCGTTTGGTTTCCGGCGCCT‑‑GT‑‑GAGCTCCCCCCCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTT                                                                    <  NB501016:282:H2V7GAFX2:1:21211:5848:8280/151‑1 (MQ=60)
                                                                         AGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCCA‑‑GTTAGA‑‑TAGAGCGCCCCGCGGGCGGCGCgcgcgcgcacaggcgctgcaaaccgaaaagcaagcggcaggcggccccgacccggtgcccgggc                                                                  >  NB501016:282:H2V7GAFX2:4:11508:21709:19542/1‑86 (MQ=60)
                                                                                        GGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCCT‑‑GTGAGA‑‑TCGAGCGCCGCGCGGGCGGCGCTGGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAATGCTG                                                  <  NB501016:282:H2V7GAFX2:4:11608:3696:16036/151‑1 (MQ=60)
                                                                                         GGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCCT‑‑GTGAGA‑‑TCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAATGCTGC                                                 <  NB501016:282:H2V7GAFX2:1:11105:12113:14849/151‑1 (MQ=60)
                                                                                                                     GGTTTTCGGCGCCT‑‑GTGAGA‑‑TCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAATGCTGCCTCCGCCAAGCACGCACAGTGGTGTACA                     <  NB501016:282:H2V7GAFX2:1:11204:17784:10098/151‑1 (MQ=60)
                                                                                                                                      A‑‑GA‑‑TCGAGTGCCGCCCGCGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAATGCTGCCTCCGCCAAGCACGCACAGTGGTGTACAGCAACACCGTAGCGAGC    >  NB501016:282:H2V7GAFX2:4:11502:1326:4124/1‑151 (MQ=60)
                                                                                                                                          A‑‑TCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCAAAAGGCATGCGTCTGCCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAATGCTGCCTCCGCCAAGCACCCACAGTGGTGTACACCAAAACCGAACCGAGCAC  >  NB501016:282:H2V7GAFX2:3:21510:24338:15177/1‑151 (MQ=60)
                                                                                                                                          |                                                                                                                                                        
CGCATCTCGGTAATGCTGATCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCCT‑‑GT‑‑GA‑‑TCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAATGCTGCCTCCGCCAAGCACGCACAGTGGTGTACAGCAACACCGTAGCGAGCAC  >  NC_002947_CJ‑RC/1070114‑1070398

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: