Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A5 F61 I1 R1
|
63 |
66.6 |
2847048 |
98.6% |
2807189 |
146.5 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_002947_CJ‑RC |
1,070,248 |
+GA |
intergenic (+48/+94) |
aroP‑I → / ← PP_0928 |
aromatic amino acid transport protein/K+‑dependent Na+/Ca+ exchanger‑like protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_002947_CJ‑RC | 1,070,246 | 1 | . | G | 84.2%
| 93.3
/ 13.8
| 42 | intergenic (+46/+96) | aroP‑I/PP_0928 | aromatic amino acid transport protein/K+‑dependent Na+/Ca+ exchanger‑like protein |
| Reads supporting (aligned to +/- strand): ref base . (1/5); new base G (8/24); total (10/32) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
| * | NC_002947_CJ‑RC | 1,070,246 | 2 | . | A | 85.7%
| 104.4
/ 14.6
| 42 | intergenic (+46/+96) | aroP‑I/PP_0928 | aromatic amino acid transport protein/K+‑dependent Na+/Ca+ exchanger‑like protein |
| Reads supporting (aligned to +/- strand): ref base . (1/5); new base A (9/27); total (10/32) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
CCTGACGCCGCCGATTCGCATCTCGGTAATGCTGATCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCCTGT‑‑G‑‑ATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAATGCTGCCTCCGCCAAGCACGCACAGTGGTGTACAGCAACA > NC_002947_CJ‑RC/1070098‑1070385
||
ccTGACGCCGCCGATTCGCATCTCGGTAATGCTGATCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCCtgt > 5:177164/1‑149 (MQ=255)
ccTGACGCCGCCGATTCGCATCTCGGTAATGCTGATCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCCCCagt > 4:41747/1‑149 (MQ=255)
tGACGCCGCCGATTCGCATCTCGGTAATGCTGATCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCCcgttt > 1:135354/1‑147 (MQ=255)
tGACGCCGCCGATTCGCATCTCGGTAATGCTGATCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCCagttt > 1:89904/1‑147 (MQ=255)
ccgccgATTCGCATCTCGGTAATGCTGATCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCCTGT‑‑G‑‑agatc > 8:240962/1‑144 (MQ=255)
ccgccgATTCGCATCTCGGTAATGCTGATCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCCTGT‑‑G‑‑agatc < 7:42626/148‑5 (MQ=255)
gCATCTCGGTAATGCTGATCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCCTGTGAG‑‑ATCGAGCGCcgcgc > 2:68762/1‑149 (MQ=255)
gCATCTCGGTAATGCTGATCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCCTGTGAG‑‑ATCGAGCGCcgcgc < 4:231826/149‑1 (MQ=255)
aTGCTGATCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCTTTAGGCTTTCATCGCCTGTGAG‑‑ATCGAGCGCCGCCCGCGCGGCGCTc < 3:92199/149‑1 (MQ=25)
aTGCTGATCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCCTGTGAG‑‑ATCGAGCGCCGCGCGGGCGGCGCt < 5:351083/148‑1 (MQ=255)
aTGCTGATCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCCTGTGAG‑‑ATCGAGCGCCGCGCGGGCGGCGCt < 1:124496/148‑1 (MQ=255)
tGCTGATCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCCTGTGAG‑‑ATCGAGCGCCGCGCGGGCGGCGCTc < 7:58048/148‑1 (MQ=255)
gCTGATCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCCTGTGAG‑‑ATCGAGCGCCGCGCGGGCGGCGCTCg > 8:177413/1‑148 (MQ=255)
cTGATCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCCTGTGAG‑‑ATCGAGCGCCGCCCGCGCGGCGCTCGa < 4:114396/148‑1 (MQ=38)
aTCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCCTGTGAG‑‑ATCGAGCGCCGCgcgggc > 7:204457/1‑136 (MQ=255)
aTCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCCTGTGAG‑‑ATCGAGCGCCGCGCGGGCGGCGCTCGAtct < 4:95402/148‑1 (MQ=255)
aTCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCCTGTGAG‑‑ATCGAGCGCCGCGCGGGCGGCGCTCGAtc < 3:135362/147‑1 (MQ=255)
tCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCCTGTGAG‑‑ATCGAGCGCCGCgcgggcg < 8:204457/136‑1 (MQ=255)
tCGGTGTGCTGTGGGTGGATTTCAAGCTGATCAAGTTTTGCCTGGCCAATGGCTGATCGGGTTTGTTGGTATGGGGTATGCCGTTAGGTTTTCGGCGCCTGTTAG‑‑ATCGTGCGCCGCGCGGGCGGCGCTCGATCTAACAGGCGATGaaa < 4:235480/149‑1 (MQ=25)
ctgtgctgtgGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCCAGTTAG‑‑ATAGAGCGCCCCGCGGGGGGCGCGCGATATGACAGGCgggtaaag > 8:8166/1‑140 (MQ=255)
ctgtgctgtgGGTGGCTTTCAAGCTGAAGAAGGCTCACCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCCTGTGAG‑‑ATAGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGcc > 6:256204/1‑149 (MQ=38)
gttgggggggCTTTCACCCTGAATACGGCGCCCCCGCCAATGGGCTCAGCGGGTTGGTGCGTATGGGTTATGCCGTTAGGTTTTCGGCGCCTGTGAG‑‑ATCGCGCGCCGCGCGGGGGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAg < 4:13463/145‑1 (MQ=255)
ggggttttAAAGCTTAACACGGCACCCCAGCCAACGGGCTGAGGGGGTTTTTCCGTTCGGGTTAGGCGGTTTGGTTTTCGGCGCCTGTTAC‑‑ATCGCGCGCCGCGCGGGCGGCGCTCTATCTCACAGGCGATGAAAGCCTAAAGGCATg < 8:127793/143‑1 (MQ=12)
tCACGCTGAAGACGGCTCGCCTGGCAATGGGCTTATCGGGTTTGTTCGTACGGGGTATGCCGTTTGGTTTTCGGCGCCTGTGAG‑‑AGCGAGCGCCGGGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCTTAAAGGCATGCGTCTgg < 6:201713/148‑1 (MQ=25)
tCAAGGTGAATATGGCTGGCCTGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTTTCCCGTTAGGTTTTCGGCGCGTGTGAG‑‑ATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTg < 8:23577/147‑1 (MQ=37)
gCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCCTGTGAG‑‑ATCGAGCGCCGCgcgggc < 1:186531/98‑1 (MQ=38)
gCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCCTGTGAG‑‑ATCGAGCGCCGCgcgggc > 2:186531/1‑98 (MQ=38)
aagaagGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCCTGTGAG‑‑ATCGAGCGCAGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTg > 8:176943/1‑148 (MQ=255)
cAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCCTGTGAG‑‑ATCGAGCGCCGCGCGGGCGGCGCGCGCTCTCCCAAGCGATGAAAGCCTAAAGGCATGCGTCTGGGCGCCCGGACGCGTTCCCCt > 8:269180/1‑148 (MQ=37)
gCCATGGGCTGATCGGGTTTGTTCGATAGGGGTTTCCCGTTAGGTTTTCGGCGCCTGTGAG‑‑ATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCa < 6:127610/149‑1 (MQ=37)
cAAGGGCTGATCGGGTTTGTCCGTACGGGGTATGCCTTTAGGTTTTCGGCGCCTGT‑‑GACACCGAGCGCCGCGCGGGCGGCGCGCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATg < 1:75383/149‑1 (MQ=38)
gggCTGATCGGGTTTGTTCGTATGGGGTATGCCGTTAGGTTTTCGGCGCCTGT‑‑GCTATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTATAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGccc < 3:281705/149‑1 (MQ=39)
aTCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCCTGTGAG‑‑ATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCa < 6:36505/147‑1 (MQ=255)
gggTTTGTGCGTATGGGGTAGGCGTTTTGGTTTGCGGGCCCTGTCAG‑‑CCCCCGCGCCGCGCGGGCGGCGCGCCATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAAtgct < 2:155633/149‑1 (MQ=255)
ggTTTGTTCTTATGGGTTATGCCGTTAGTTTTTGGGCGCCTGT‑‑GTTATCGAGCGCGGCGCGGGGGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAAtgct < 7:240962/148‑1 (MQ=255)
gTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCCTGTGAG‑‑ATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAAtgctgc < 6:177164/149‑1 (MQ=255)
cGTAAGGGGTATGCCGTTAGGTTTTCGGCGCCTGTGAG‑‑ATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAATGCTGCCTCCGc < 1:68762/148‑1 (MQ=255)
aaGGGGTATGCCGTTAGGTTTTCGGCGCCTGTGAG‑‑ATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAATGCTGCCTCCGCCaa < 7:177413/148‑1 (MQ=255)
gTATGCCGTTAGGTTTTCGGCGCCTGTGAG‑‑ATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAATGCTGCCTCCGCCAAgcacg < 8:23283/148‑1 (MQ=255)
tATGCCGTTAGGTTTTCGGCGCCTGTGAG‑‑ATCGTCCGCCGCGCGGGCGTGGCTGGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAATGCTGCCTCCGCCTAgcacgca < 5:147942/149‑1 (MQ=255)
tATGCCGTTAGGTTTTCGGCGCCTGT‑‑GTTATCGAGCGCCGCGCGGGGGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAATGCTGCCTCCGCCAAgcacgc < 7:295405/148‑1 (MQ=255)
aTGCCGTTAGGTTTTCGGCGCCTGTGAG‑‑ATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAATGCTGCCTCCGCCAAgcacgca < 7:208668/148‑1 (MQ=255)
cGTTAGGTTTTCGGCGCCTGTGAG‑‑ATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAATGCTGCCTCCGCCAAGCACGCACAgtg < 6:150360/149‑1 (MQ=255)
tAGGTTTTCGGCGCCTGTGAG‑‑ATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAATGCTGCCTCCGCCAAGCACGCACAgtggt < 5:16900/148‑1 (MQ=255)
ttttCGGCGCCTGTGAG‑‑ATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAATGCTGCCTCCGCCAAGCACGCACAGTGGTGTACa < 1:209238/149‑1 (MQ=255)
gcgcCTGTGAG‑‑ATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGTATGCGTCTGGCGGCCCTGACGCGTTACCCTTCCATTCCCCTCAATGCTGCCTCCGCCAAGCACGCACAGTGGTGTACAGCAaca > 6:126877/1‑149 (MQ=38)
||
CCTGACGCCGCCGATTCGCATCTCGGTAATGCTGATCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCCTGT‑‑G‑‑ATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAATGCTGCCTCCGCCAAGCACGCACAGTGGTGTACAGCAACA > NC_002947_CJ‑RC/1070098‑1070385
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CGCCGCCGATTCGCATCTCGGTAATGCTGATCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCCTGT‑‑G‑‑ATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAATGCTGCCTCCGCCAAGCACGCACAGTGGTGTACAGCAACACCGTAGCGAGCA > NC_002947_CJ‑RC/1070103‑1070397
|
CGCCGCCGATTCGCATCTCGGTAATGCTGATCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCCTGT‑‑G‑‑Agatcg < NB501016:282:H2V7GAFX2:4:11409:2032:2714/151‑6 (MQ=60)
CATCTCGGTAATGCTGATCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCCTGT‑‑G‑‑Agatagagccccccccggg > NB501016:282:H2V7GAFX2:4:11405:21567:9669/1‑133 (MQ=60)
AATGCTGATCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCTTTAGGCTTTCATCGCCTGTGAG‑‑ATCGAGCGCCGCCCGCGCGGCGCTCG < NB501016:282:H2V7GAFX2:2:11207:11073:18164/151‑1 (MQ=60)
AATGCTGATCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCCTGTGAG‑‑ATCGAGCGCCGCGCGGGCGGCGCTCG < NB501016:282:H2V7GAFX2:4:11412:19544:1112/151‑1 (MQ=60)
AATGCTGATCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCCTGTGAG‑‑ATCGAGCGCCGCGCGGGCGGCGCTC < NB501016:282:H2V7GAFX2:1:11212:18668:18779/150‑1 (MQ=60)
AATGCTGATCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCCTGTGAG‑‑ATCGAGCGCCGCGCGGGCGGCGCTC < NB501016:282:H2V7GAFX2:3:21611:12066:9682/150‑1 (MQ=60)
GATCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCCTGTGAG‑‑ATCGAGCGCCGCGCGGGCGGCGCTCGATCT < NB501016:282:H2V7GAFX2:2:11304:8537:8836/149‑1 (MQ=60)
GATCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCCTGTGAG‑‑ATCGAGCGCCGCGCGGGCGG > NB501016:282:H2V7GAFX2:4:21405:16481:5367/1‑139 (MQ=60)
CGCTGTGCTGTGGGTGGCTTTCAAGCTTAAGACGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTACGGGGTATGCCGTTAGGTTTTCGGCGCCTGTGAG‑‑ATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCC < NB501016:282:H2V7GAFX2:4:11609:4160:15247/151‑1 (MQ=60)
GGGGTGGCTTTCAAGCTGAAGACGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTCCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCCTGTGAG‑‑ATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATG < NB501016:282:H2V7GAFX2:3:21603:23845:12477/151‑1 (MQ=60)
AGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCCTGTGAG‑‑ATCGAGCGCCGCGCGGGCG < NB501016:282:H2V7GAFX2:1:21101:25408:13921/100‑1 (MQ=60)
CCAAGGGCTGATCGGGTTTGTCCGTACGGGGTATGCCTTTAGGTTTTCGGCGCCTGT‑‑GACACCGAGCGCCGCGCGGGCGGCGCGCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGC < NB501016:282:H2V7GAFX2:1:11203:19725:5720/151‑1 (MQ=60)
CGGGCTGATCGGGTTTGTTCGTATGGGGTATGCCGTTAGGTTTTCGGCGCCTGT‑‑GCTATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTATAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCC < NB501016:282:H2V7GAFX2:2:21212:5277:3740/151‑1 (MQ=60)
GGGGTTTGTTCTTATGGGTTATGCCGTTAGTTTTTGGGCGCCTGT‑‑GTTATCGAGCGCGGCGCGGGGGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAATGCTG < NB501016:282:H2V7GAFX2:4:21412:17161:3823/151‑1 (MQ=60)
TCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCCTGTGAG‑‑ATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAATGCTGCCTCCGCC < NB501016:282:H2V7GAFX2:1:11201:18858:19028/150‑1 (MQ=60)
GTAAGGGGTATGCCGTTAGGTTTTCGGCGCCTGTGAG‑‑ATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAATGCTGCCTCCGCCAAG < NB501016:282:H2V7GAFX2:4:11611:19015:17743/151‑1 (MQ=60)
GGTATGCCGTTAGGTTTTCGGCGCCTGT‑‑GTTATCGAGCGCCGCGCGGGGGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAATGCTGCCTCCGCCAAGCACGCA < NB501016:282:H2V7GAFX2:4:21511:18056:1451/151‑1 (MQ=60)
GTATGCCGTTAGGTTTTCGGCGCCTGTGAG‑‑ATCGTCCGCCGCGCGGGCGTGGCTGGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAATGCTGCCTCCGCCTAGCACGCAC < NB501016:282:H2V7GAFX2:3:11606:22002:4805/151‑1 (MQ=60)
GTATGCCGTTAGGTTTTCGGCGCCTGTGAG‑‑ATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAATGCTGCCTCCGCCAAGCACGCAC < NB501016:282:H2V7GAFX2:4:21406:16877:1921/151‑1 (MQ=60)
TTAGGTTTTCGGCGCCTGTGAG‑‑ATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAATGCTGCCTCCGCCAAGCACGCACAGTGGTG < NB501016:282:H2V7GAFX2:3:11404:4954:8408/150‑1 (MQ=60)
GTTTTCGGCGCCTGTGAG‑‑ATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAATGCTGCCTCCGCCAAGCACGCACAGTGGTGTACAG < NB501016:282:H2V7GAFX2:1:21105:13789:20021/151‑1 (MQ=60)
G‑‑ATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCGGACGCGGTCCCCTTCCATGCCCCGCAAATCTGCCTCCGCCAAGCACCCACAGTGGTGTACAGCAACACCCTAGCGcgcc > NB501016:282:H2V7GAFX2:4:21611:6224:15841/1‑147 (MQ=60)
ATCGAGCGCCGCCCGCGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAA < NB501016:282:H2V7GAFX2:3:21502:4785:9403/50‑1 (MQ=0)
|
CGCCGCCGATTCGCATCTCGGTAATGCTGATCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCCTGT‑‑G‑‑ATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAATGCTGCCTCCGCCAAGCACGCACAGTGGTGTACAGCAACACCGTAGCGAGCA > NC_002947_CJ‑RC/1070103‑1070397
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
