Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A3 F63 I9 R1
|
15 |
403.8 |
12704894 |
98.5% |
12514320 |
150.5 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,247,487 |
+A |
intergenic (+59/‑286) |
exuR → / → yqjA |
hexuronate regulon transcriptional repressor; autorepressor/general envelope maintenance protein; DedA family inner membrane protein; putative multidrug efflux transporter |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,247,486 | 1 | . | A | 99.5%
| 1540.5
/ ‑2.0
| 399 | intergenic (+58/‑287) | exuR/yqjA | hexuronate regulon transcriptional repressor; autorepressor/general envelope maintenance protein; DedA family inner membrane protein; putative multidrug efflux transporter |
| Reads supporting (aligned to +/- strand): ref base . (0/2); new base A (191/206); total (191/208) |
| Fisher's exact test for biased strand distribution p-value = 5.00e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 417 total aligned reads displayed.
ACCAGCGACGACTTCGAGTTCAATGCCGACCGCTATCTATTCGCCGAAAACCCGGTGGTGCATCTCGATACAGCCACCAGCGGCAGTAAATGAAATTCCTGTCCGACAGGCGCTGCAATGCGCCTGTTTGTCTCGTCGGTAAGCGAAAAGT‑ATAAAGTGTCAGCCTGTGTAAATCCTCTCGCCACCCTCCCCTGCATTCAGCAAAATCAGACTCCACGGACATGTAATTTTGATAACGAACAACGTTGACCTTTGTTACAATTAGATTCAATTTGAATTTATGTTTTTGAATGCTT > NC_000913/3247336‑3247631
|
aCCAGCGACGACTTCGAGTTCAATGCCGACCGCTATCTATTCGCCGAAAACCCGGTGGTGCATCTCGATACAGCCACCAGCGGCAGTAAATGAAATTCCTGTCCGACAGGCGCTGCAATGCGCCTGTTTGTCTCGTCGGTAAGCGAAAAGt > 5:887993/1‑151 (MQ=255)
ccAGCGACGACTTCGAGTTCAATGCCGACCGCTATCTATTCGCCGAAAACCCGGTGGTGCATCTCGATACAGCCACCAGCGGCAGTAAATGAAATTCCTGTCCGACAGGCGCTGCAATGCGCCTGTTTGTCTCGTCGGTAAGCGAAAAGt > 5:501354/1‑150 (MQ=255)
aGCGACGACTTCGAGTTCAATGCCGACCGCTATCTATTCGCCGAAAACCCGGTGGTGCATCTCGATACAGCCACCAGCGGCAGTAAATGAAATTCCTGTCCGACAGGCGCTGCAATGCGCCTGTTTGTCTCGTCGGTAAGCGAAAAGt‑aat > 2:709172/1‑149 (MQ=255)
cgacTTCGAGTTCAATGCCGACCGCTATCTATTCGCCGAAAACCCGGTGGTGCATCTCGATACAGCCACCAGCGGCAGTAAATGAAATTCCTGTCCGACAGGCGCTGCAATGCGCCTGTTTGTCTCGTCGGTAAGCGAAAAGTAATAAAgt < 6:192792/151‑1 (MQ=255)
gacTTCGAGTTCAATGCCGACCGCTATCTATTCGCCGAAAACCCGGTGGTGCATCTCGATACAGCCACCAGCGGCAGTAAATGAAATTCCTGTCCGACAGGCGCTGCAATGCGCCTGTTTGTCTCGTCGGTAAGCGAAAAGTAATAAAgtg < 3:1435042/151‑1 (MQ=255)
gacTTCGAGTTCAATGCCGACCGCTATCTATTCGCCGAAAACCCGGTGGTGCATCTCGATACAGCCACCAGCGGCAGTAAATGAAATTCCTGTCCGACAGGCGCTGCAATGCGCCTGTTTGTCTCGTCGGTAAGCGAAAAGTAATAAAgtg > 4:693630/1‑151 (MQ=255)
gacTTCGAGTTCAATGCCGACCGCTATCTATTAGCCGAAAACCCGGTGGTGCATCTCGATAAAGCCACCAGCGGCAGTAAATGAAATTCCTGTCCGACAGGCGCTGCAATGCGCCTGTTTGTCTCGTCGCTAAGCGAAAAGTAATAAAgtt > 4:841895/1‑150 (MQ=255)
ttCGAGTTCAATGCCGACCGCTATCTATTCGCCGAAAACCCGGTGGTGCATCTCGATACAGCCACCAGCGGCAGTAAATGAAATTCCTGTCCGACAGGCGCTGCAATGCGCCTGTTTGTCTCGTCGGTAAGCGAAAAGTAATAAAGTGTc > 3:241993/1‑150 (MQ=255)
tCGAGTTCAATGCCGACCGCTATCTATTCGCCGAAAACCCGGTGGTGCATCTCGATACAGCCACCAGCGGCAGTAAATGAAATTCCTGTCCGACAGGCGCTGCAATGCGCCTGTTTGTCTCGTCGGTAAGCGAAAAGTAATAAAGTGTc < 3:802562/149‑1 (MQ=255)
tCGAGTTCAATGCCGACCGCTATCTATTCGCCGAAAACCCGGTGGTGCATCTCGATACAGCCACCAGCGGCAGTAAATGAAATTCCTGTCCGACAGGCGCTGCAATGCGCCTGTTTGTCTCGTCGGTAAGCGAAAAGTAATAAAGTGTCa < 6:279133/150‑1 (MQ=255)
gAGTTCAATGCCGACCGCTATCTATTCGCCGAAAACCCGGTGGTGCATCTCGATACAGCCACCAGCGGCAGTAAATGAAATTCCTGTCCGACAGGCGCTGCAATGCGCCTGTTTGTCTCGTCGGTAAGCGAAAAGTAATAAAGTGTCAGcc > 2:852233/1‑151 (MQ=255)
gTTCAATGCCGACCGCTATCTATTCGCCGAAAACCCGGTGGTGCATCTCGATACAGCCACCAGCGGCAGTAAATGAAATTCCTGTCCGACAGGCGCTGCAATGCGCCTGTTTGTCTCGTCGGTAAGCGAAAAGTAATAAAGTGTCAGCCtg > 5:140403/1‑151 (MQ=255)
tCAATGCCGACCGCTATCTATTCGCCGAAAACCCGGTGGTGCATCTCGATACAGCCACCAGCGGCAGTAAATGAAATTCCTGTCCGACAGGCGCTGCAATGCGCCTGTTTGTCTCGTCGGTAAGCGAAAAGTAATAAAGTGTCAGCCtgt < 4:40159/150‑1 (MQ=255)
gACCGCTATCTATTCGCCGAAAACCCGGTGGTGCATCTCGATACAGCCACCAGCGGCAGTAAATGAAATTCCTGTCCGACAGGCGCTGCAATGCGCCTGTTTGTCTCGTCGGTAAGCGAAAAGTAATAAAGTGTCAGCCTGTGTAAATCct < 4:1255062/151‑1 (MQ=255)
gCTATCTATTCGCCGAAAACCCGGTGGTGCATCTCGATACAGCCACCAGCGGCAGTAAATGAAATTCCTGTCCGACAGGCGCTGCAATGCGCCTGTTTGTCTCGTCGGTAAGCGAAAAGTAATAAAGTGTCAGCCTGTGTAAATCCTCTCg > 8:764876/1‑151 (MQ=255)
atTCGCCGAAAACCCGGTGGTGCATCTCGATACAGCCACCAGCGGCAGTAAATGAAATTCCTGTCCGACAGGCGCTGCAATGCGCCTGTTTGTCTCGTCGGTAAGCGAAAAGTAATAAAGTGTCAGCCTGTGTAAATCCTCTCGCCACCCt < 6:760460/151‑1 (MQ=255)
atTCGCCGAAAACCCGGTGGTGCATCTCGATACAGCCACCAGCGGCAGTAAATGAAATTCCTGTCCGACAGGCGCTGCAATGCGCCTGTTTGTCTCGTCGGTAAGCGAAAAGTAATAAAGTGTCAGCCTGTGTAAATCCTCTCGCCACCCt < 4:1478367/151‑1 (MQ=255)
tCGCCGAAAACCCGGTGGTGCATCTCGATACAGCCACCAGCGGCAGTAAATGAAATTCCTGTCCGACAGGCGCTGCAATGCGCCTGTTTGTCTCGTCGGTAAGCGAAAAGTAATAAAGTGTCAGCCTGTGTAAATCCTCTCGCCACCCTc < 7:28073/150‑1 (MQ=255)
cGCCGAAAACCCGGTGGTGCATCTCGATACAGCCACCAGCGGCAGTAAATGAAATTCCTGTCCGACAGGCGCTGCAATGCGCCTGTTTGTCTCGTCGGTAAGCGAAAAGTAATAAAGTGTCAGCCTGTGTAAATCCTCTCGCCACCCTcc < 7:561229/150‑1 (MQ=255)
aaCCCGGTGGTGCATCTCGATACAGCCACCAGCGGCAGTAAATGAAATTCCTGTCCGACAGGCGCTGCAATGCGCCTGTTTGTCTCGTCGGTAAGCGAAAAGTAATAAAGTGTCAGCCTGTGTAAATCCTCTCGCCACCCTCCCCTGCAtt > 5:573658/1‑151 (MQ=255)
cccGGTGGTGCATCTCGATACAGCCACCAGCGGCAGTAAATGAAATTCCTGTCCGACAGGCGCTGCAATGCGCCTGTTTGTCTCGTCGGTAAGGGAAAAGTAATAAAGTGTCAGCCTGTGTAAATCCTCTCGCCACCCTCCCCTGCATTc > 1:1251125/1‑150 (MQ=255)
ccGGTGGTGCATCTCGATACAGCCACCAGCGGCAGTAAATGAAATTCCTGTCCGACAGGCGCTGCAATGCGCCTGTTTGTCTCGTCGGTAAGCGAAAAGTAATAAAGTGTCAGCCTGTGTAAATCCTCTCGCCACCCTCCCCTGCATTCAg < 2:1331555/151‑1 (MQ=255)
ccGGTGGTGCATCTCGATACAGCCACCAGCGGCAGTAAATGAAATTCCTGTCCGACAGGCGCTGCAATGCGCCTGTTTGTCTCGTCGGTAAGCGAAAAGTAATAAAGTGTCAGCCTGTGTAAATCCTCTCGCCACCCTCCCCTGCATTCAg < 3:711584/151‑1 (MQ=255)
cGGTGGTGCATCTCGATACAGCCACCAGCGGCAGTAAATGAAATTCCTGTCCGACAGGCGCTGCAATGCGCCTGTTTGTCTCGTCGGTAAGCGAAAAGTAATAAAGTGTCAGCCTGTGTAAATCCTCTCGCCACCCTCCCCTGCATTCAGc < 1:762286/151‑1 (MQ=255)
cGGTGGTGCATCTCGATACAGCCACCAGCGGCAGTAAATGAAATTCCTGTCCGACAGGCGCTGCAATGCGCCTGTTTGTCTCGTCGGTAAGCGAAAAGTAATAAAGTGGCAGCCTGTGTAAATCCGCTCGCGCCCCTCCCCTGCATTCAGc > 3:375677/1‑151 (MQ=255)
gtggtgCATCTCGATACAGCCACCAGCGGCAGTAAATGAAATTCCTGTCCGACAGGCGCTGCAATGCGCCTGTTTGTCTCGTCGGTAAGCGAAAAGTAATAAAGTGTCAGCCTGTGTAAATCCTCTCGCCACCCTCCCCTGCATTCAGCa > 8:1458418/1‑150 (MQ=255)
gggtgCATCTCGATACAGCCACCAGCGGCAGTAAATGAAGTTCCTGTCCGACAGGCGCTGCAATGCGCCTGTTTGTCTCGTCGGTAAGCGAAAAGTAATAAAGTGTCAGCCTGTGTAAATCCTCTCGCCACCCTCCCCTGCATTCAGCaaa < 7:1432754/150‑1 (MQ=255)
ggtgCATCTCGATACAGCCACCAGCGGCAGTAAATGAAATTCCTGTCCGACAGGCGCTGCAATGCGCCTGTTTGTCTCGTCGGTAAGCGAAAAGTAATAAAGTGTCAGCCTGTGTAAATCCTCTCGCCACCCTCCCCTGCATTCAGCaaaa < 4:789141/151‑1 (MQ=255)
aTCTCGATACAGCCACCAGCGGCAGTAAATGAAATTCCTGTCCGACAGGCGCTGCAATGCGCCTGTTTGTCTCGTCGGTAAGCGAAAAGTAATAAAGTGTCAGCCTGTGTAAATCCTCTCGCCACCCTCCCCTGCATTCAGCAAAATc > 6:1023941/1‑148 (MQ=255)
ctcGATACAGCCACCAGCGGCAGTAAATGAAATTCCTGTCCGACAGGCTCTCCAATGCGCCTGTATGTCTCGTCGGTAAGCGAAAACTAATAAAGTGTCAGCCTGTGTAAATCATATAGCCACCCTACCCTGCATTCAGCAAAATCAGACt > 1:66180/1‑151 (MQ=255)
gATACAGCCACCAGCGGCAGTAAATGAAATTCCTGTCCGACAGGCGCTGCAATGCGCCTGTTTGTCTCGTCGGTAAGCGAAAAGTAATAAAGTGTCAGCCTGTGTAAATCCTCTCGCCACCCTCCCCTGCATTCAGCAAAATCAGACTcc > 4:988592/1‑150 (MQ=255)
aTACAGCCACCAGCGGCAGTAAATGAAATTCCTGTCCGACAGGCGCTGCAATGCGCCTGTTTGTCTCGTCGGTAAGCGAAAAGTAATAAAGTGTCAGCCTGTGTAAATCCTCTCGCCACCCTCCCCTGCATTCAGCGAAATCAGACTCCAc > 8:1543802/1‑151 (MQ=255)
aTACAGCCACCAGCGGCAGTAAATGAAATTCCTGTCCGACAGGCGCTGCAATGCGCCTGTTTGTCTCGTCGGTAAGCGAAAAGTAATAAAGTGTCAGCCTGTGTAAATCCTCTCGCCACCCTCCCCTGCATTCAGCAAAATCAGACTCCAc < 4:1530475/151‑1 (MQ=255)
tACAGCCACCAGCGGCAGTAAATGAAATTCCTGTCCGACAGGCGCTGCAATGCGCCTGTTTGTCTCGTCGGTAAGCGAAAAGTAATAAAGTGTCAGCCTGTGTAAATCCTCTCGCCACCCTCCCCTGCATTCAGCAAAATCAGACTCCACg > 7:808477/1‑151 (MQ=255)
gCCACCAGCGGCAGTAAATGAAATTCCTGTCCGACAGGCGCTGCAATGCGCCTGTTTGTCTCGTCGGTAAGCGAAAAGTAATAAAGTGTCAGCCTGTGTAAATCCTCTCGCCACCCTCCCCTGCATTCAGCAAAATCAGACTCCACGGACa < 5:607083/151‑1 (MQ=255)
ccaccaGCGGCAGTAAATGAAATTCCTGTCCGACAGGCGCTGCAATGCGCCTGTTTGTCTCGTCGGTAAGCGAAAAGTAATAAAGTGTCAGCCTGTGTAAATCCTCTCGCCACCCTCCCCTGCATTCAGCAAAATCAGACTCCACGGACAt > 3:534474/1‑151 (MQ=255)
caccaGCGGCAGTAAATGAAATTCCTGTCCGACAGGCGCTGCAATGCGCCTGTTTGTCTCGTCGGTAAGCGAAAAGTAATAAAGTGTCAGCCTGTGTAAATCCTCTCGCCACCCTACCCTGCATTCAGCAAAATCAGACTCCACGGACATg > 4:26876/1‑151 (MQ=255)
accaGCGGCAGTAAATGAAATTCCTGTCCGACAGGCGCTGCAATGCGCCTGTTTGTCTCGTCGGTAAGCGAAAAGTAATAAAGTGTCAGCCTGTGTAAATCCTCTCGCCACCCTCCCCTGCATTCAGCAAAATCAGACTCCACGGACATGt < 3:1357331/151‑1 (MQ=255)
cgaGCGGCAGTAAATGAAATTCCTGTGCGACAGGCGCTGCAATGCGCCTGTTTGTCTCGTCGGTAAGCGAAAAGTAATAAAGTGTCAGCCTGTGTAAATCCTCTCGCCACCCTCCCCTGCATTCAGCAAAATCAGACTCCACGGACATGTa < 8:293906/149‑1 (MQ=255)
aGCGGCAGTAAATGAAATTCCTGTCCGACAGGCGCTGCAATGCGCCTGTTTGTCTCGTCGGTAAGCGAAAAGTAATAAAGTGTCAGCCTGTGTAAATCCTCTCGCCACCCTCCCCTGCATTCAGCAAAATCAGACTCCACGGACATGTAAt > 4:1196667/1‑151 (MQ=255)
gCGGCAGTAAATGAAATTCCTGTCCGACAGGCGCTGCAATGCGCCTGTTTGTCTCGTCGGTAAGCGAAAAGTAATAAAGTGTCAGCCTATGTAAATCCTCTCGCCACCCTCCCCTGCATTCAGCAAAATCAGACTCCACGGACATGTAAtt < 2:1009240/151‑1 (MQ=255)
ggCAGTAAATGAAATTCCTGTCCGACAGGCGCTGCAATGCGCCTGTTTGTCTCGTCGGTAAGCGAAAAGTAATAAAGTGTCAGCCTGTGTAAATCCTCTCGCCACCCTCCCCTGCATTCAGCAAAATCAGACTCCACGGACATGTAAtttt < 6:1130330/151‑1 (MQ=255)
ggCAGTAAATGAAATTCCTGTCCGACAGGCGCTGCAATGCGCCTGTTTGTCTCGTCGGTAAGCGAAAAGTAATAAAGTGTCAGCCTGTGTAAATCCTCTCGCCACCCTCCCCTGCAGTCAGCAAAATCAGACTCCACGGACATGTAAtttt > 2:1464723/1‑151 (MQ=255)
gCAGTAAATGAAATTCCTGTCCGACAGGCGCTGCAATGCGCCTGTTTGTCTCGTCGGTAAGCGAAAAGTAATAAAGTGTCAGCCTGTGTAAATCCTCTCGCTACCCTCCCCTGCATTCAGCAAAATCAGACTCCACGGACATGTAATTTTg < 1:1051386/151‑1 (MQ=255)
gCAGTAAATGAAATTCCTGTCCGACAGGCGCTGCAATGCGCCTGTTTGTCTCGTCGGTAAGCGAAAAGTAATAAAGTGTCAGCCTGTGTAAATCCTCTCGCCACCCTCCCCTGCATTCAGCAAAATCAGACTCCACGGACATGTAATTTTg < 3:1020608/151‑1 (MQ=255)
tAAATGAAATTCCTGTCCGACAGGCGCTGCAATGCGCCTGTTTGTCTCGTCGGTAAGCGAAAAGTAATAAAGTGTCAGCCTGTGTAAATCCTCTCGCCACCCTCCCCTGCATTCAGCAAAATCAGACTCCACGGACATGTAATTTTGATa > 5:1189529/1‑150 (MQ=255)
aaaTGAAATTCCTGTCCGACAGGCGCTGCACTGCGCCTGTTTGTCTCGTCGGTAAGCGAAAAGTAATAAAGTGTCAGCCTGTGTAAATCCTCTCGCCACGCTCCCGTGCATTCAGCAAAATCAGACTCCACGGACATGTAATTTTGATaa < 7:699820/150‑1 (MQ=255)
aaaTGAAATTCCTGTCCGACAGGCGCTGCAATGCGCCTGTTTGTCTCGTCGGTAAGCGAAAAGTAATAAAGTGTCAGCCTGTGTAAATCCTCTCGCCACCCTCCCCTGCATTCAGCAAAATCAGACTCCACGGACATGTAATTTTGATaa < 1:529260/150‑1 (MQ=255)
aaTGAAATTCCTGTCCGACAGGCGCTGCAATGCGCCTGTTTGTCTCGTCGGTAAGCGAAAAGTAATAAAGTGTCAGCCTGTGTAAATCCTCTCGCCACCCTCCCCTGCATTCAGCAAAATCAGACTCCACGGACATGTAATTTTGATAACg < 2:297599/151‑1 (MQ=255)
aaTGAAATTACTGTCAGACAGGCGCTGCAATGCGCGTGTTTGTCTCCTCGGTAAGCGAAAAGTAATAAAGTGTCAGCCAGAGTAAATCCTCTCCACACCCTCACCAGCATTCAGCAAAAACAGACTCCACGGACATGTAATTTTGATAAcc > 4:824558/1‑150 (MQ=255)
aTGAAATTCCTGTCCGACAGGCGCTGCAATGCGCCTGTTTGTCTCGTCGGTAAGCGAAAAGTAATAAAGTGTCAGCCTGTGTAAATCCTCTCGCCACCCTCCCCTGCATTCAGCAAAATCAGACTCCACGGACATGTAATTTTGATAACg > 6:664584/1‑150 (MQ=255)
aTGAAATTCCTGTCCGACAGGCGCTGCAATGCGCCTGTTTGTCTCGTCGGTAAGCGAAAAGTAATAAAGTGTCAGCCTGTGTAAATCCTCTCGCCACCCTCCCCTGCATTCAGCAAAATCAGACTCCACGGACATGTAATTTTGATAACGa < 5:1028533/151‑1 (MQ=255)
gAAATTCCTGTCCGACAGGCGCTGCAATGCGCCTGTGTGTCTCGTCGGTAAGCGAAAAGTAATAAAGTGTCAGCCTGTGTAAATCCTCTCGCCACCCTCCCCTGCATTCAGCAAAATCAGACTCCACGGACATGTAATTTTGATAACGaac > 7:1221650/1‑151 (MQ=255)
aaTTCCTGTCCGACAGGCGCTGCAATGCGCCTGTTTGTCTCGTCGGTAAGCGAAAAGTAATAAAGTGTCAGCCTGTGTAAATCCTCTCGCCACCCTCCCCTGCATTCAGCAAAATCAGACTCCACGGACATGTAATTTTGATAACGaaca > 5:1495582/1‑150 (MQ=255)
aTTCCTGTCCGACAGGCGCTGCAATGCGCCTGTTTGTCTCGTCGGTAAGCGAAAAGTAATAAAGTGTCAGCCTGTGTAAATCCTCTCGCCACCCTCCCCTGCATTCAGCAAAATCAGACTCCACGGACATGTAATTTTGATAACGaacaac < 6:509630/151‑1 (MQ=255)
ttCCTGTCCGACAGGCGCTGCAATGCGCCTGTTTGTCTCGTCGGTAAGCGAAAAGTAATAAAGTGTCAGCCTGTGTAAATCCTCTCGCCACCCTCCCCTGCATTCAGCAAAATCAGACTCCACGGACATGTAATTTTGATAACGAACAACg > 1:1525296/1‑151 (MQ=255)
ttCCTGTCCGACAGGCGCTGCAATGAGCCTGTTTGTCTCGTCGGTAAGCGAAAAGTAATAAAGTGTCAGCCTGTGTAAATCCTCTCGCCACCATCCCCTGCATTCAGCAAAATCAGACTCCACGGACATGTAATTTTGATAACGAACAACg > 3:85933/1‑151 (MQ=255)
tCCTGTCCGACAGGCGCTGCAATGCGCCTGTTTGTCTCGTCGGTAAGCGAAAAGTAATAACGTGTCAGCCTGTGTAAATCCTCTCGCCACCCTCCCCTGCATTCAGCAAAATCAGACTCCACGGACATGTAATTTTGATAACGAACAACg < 3:1193635/150‑1 (MQ=255)
cTGTCCGACAGGCGCTGCAATGCGCCTGTTTGTCTCGTCGGTAAGCGAAAAGTAATAAAGTGTCAGCCTGTGTAAATCCTCTCGCCACCCTCCCCTGCATTCAGCAAAATCAGACTCCACGGACATGTAATTTTGATAACGAACAACGTTg > 1:254720/1‑151 (MQ=255)
gTCCGACAGGCGCTGCAATGCGCCTGTTTGTCTCGTCGGTAAGCGAAAAGTAATAAAGTGTCAGCCTGTGTAAATCCTCTCGCCACCCTCCCCTGCATTCAGCAAAATCAGACTCCACGGACATGTAATTTTGATAACGAACAACGTTg < 6:929362/149‑1 (MQ=255)
gTCCGACAGGCGCTGCAATGCGCCTGTTTGTCTCGTCGGTAAGCGAAAAGTAATAAAGTGTCAGCCTGTGTAAATCCTCTCGCCACCCTCCCCTGCATTCAGCAAAATCAGACTCCACGGACATGTAATTTTGATAACGAACAACGTTg < 7:380370/149‑1 (MQ=255)
ccGACAGGCGCTGCAATGCGCCTGTTTGTCTCGTCGGTAAGCGAAAAGTAATAAAGTGTCAGCCTGTGTAAATCCTCTCGCCACCCTCCCCTGCATTCAGCAAAATCAGACTCCACGGACATGTAATTTTGATAACGAACAACGTTGACCt > 7:137535/1‑151 (MQ=255)
gACAGGCGCTGCAATGCGCCTGTTTGTCTCGTCGGTAAGCGAAAAGTAATAAAGTGTCAGCCTGTGTAAATCCTCTCGCCACCCTCCCCTGCATTCAGCAAAATCAGACTCCACGGACATGTAATTTTGATAACGAACAACGTTGACCttt > 2:618704/1‑151 (MQ=255)
aCAGGCGCTGCAATGCGCCTGTTTGTCTCGTCGGTAAGCGAAAAGTAATAAAGTGTCAGCCTGTGTAAATCCTCTCGCCCCCCTCCCCTGCATTCAGCAAAATCAGACTCCACGGACATGTAATTTTGATAACGAACAACGTTGACCTTTg > 2:1089079/1‑151 (MQ=255)
cgcTGCAATGCGCCTGTTTGTCTCGTCGGTAAGCGAAAAGTAATAAAGTGTCAGCCTGTGTAAATCCTCTCGCCACCCTCCCCTGCATTCAGCAAAATCAGACTCCACGGACATGTAATTTTGATAACGAACAACGTTGACCTTTGTTAc > 4:539853/1‑150 (MQ=255)
gCAATGCGCCTGTTTGTCTCGTCGGTAAGCGAAAAGTAATAAAGTGTCAGCCTGTGTAAATCCTCTCGCCACCCTCCCCTGCATTCAGCAAAATCAGACTCCACGGACATGTAATTTTGATAACGAACAACGTTGACCTTTGTTACAAt < 5:397973/149‑1 (MQ=255)
gCAATGCGCCTGTTTGTCTCGTCGGTAAGCGAAAAGTAATAAAGTGTCAGCCTGTGTAAATCCTCTCGCCACCCTCCCCTGCATTCAGCAAAATCAGACTCCACGGACATGTAATTTTGATAACGAACAACGTTGACCTTTGTTACAATTa < 6:867636/151‑1 (MQ=255)
cAATGCGCCTGTTTGTCTCGTCGGTAAGCGAAAAGTAATAAAGTGTCAGCCTGTGTAAATCCTCTCGCCACCCTCCCCTGCATTCAGCAAAATCAGACTCCACGGACATGTAATTTTGATAACGAACAACGTTGACCTTTGTTACAAtt > 3:1475017/1‑149 (MQ=255)
cAATGCGCCTGTTTGTCTCGTCGGTAAGCGAAAAGTAATAAAGTGTCAGCCTGTGTAAATCCTCTCGCCACCCTCCCCTGCATTCAGCAAAATCAGACTCCACGGACATGTAATTTTGATAACGAACAACGTTGACCTTTGTTACAATTAg < 4:1367804/151‑1 (MQ=255)
cAATGCGCCTGTTTGTCTCGTCGGTAAGCGAAAAGTAATAAAGTGGCAGCCTGTGTAAATCCTCTCGCCACCCTCCCCTGCATTCAGCAAAATCAGACTCCACGGACATGTAATTTTGATAACGAACAACGTTGACCTTTGTTACAATTAg < 5:209544/151‑1 (MQ=255)
aaTGCGCCTGTTTGTCTCGTCGGTAAGCGAAAAGTAATAAAGTGTCAGCCTGTGTAAATCCTCTCGCCACCCTCCCCTGCATTCAGCAAAATCAGACTCCACGGACATGTAATTTTGATAACGAACAACGTTGACCTTTGTTACAATTAGa < 7:1542254/151‑1 (MQ=255)
gcgcCTGTTTGTCTCGTCGGTAAGCGAAAAGTAATAAAGTGTCAGCCTGTGTAAATCCTCTCGCCACCCTCCCCTGCATTCAGCAAAATCAGACTCCCCGGACATGTAATTTTGATAACGAACAACGTTGACCTTTGTTACAATTAGATTc > 8:1022245/1‑151 (MQ=255)
gcgcCTGTTTGTCTCGTCGGTAAGCGAAAAGTAATAAAGTGTCAGCCTGTGTAAATCCTCTCGCCACCCTCCCCTGCATTCAGCAAAATCAGACTCCACGGACATGTAATTTTGATAACGAACAACGTTGACCTTTGTTACAATTAGAtt < 6:1215795/150‑1 (MQ=255)
gcgcCTGTTTGTCTCGTCGGTAAGCGAAAAGTAATAAAGTGTCAGCCTGTGTAAATCCTCTCGCCACCCTCCCCTGCATTCAGCAAAATCAGACTCCACGGACATGTAATTTTGATAACGAACAACGTTGACCTTTGTTACAATTAGAtt < 2:1273891/150‑1 (MQ=255)
ccTGTTTGTCTCGTCGGTAAGCGAAAAGTAATAAAGTCTCAGCCTGTGTAAATCCTCTCGCCACCCTCCCCTGCATTCAGCAAAATCAGACTCCACGGACATGTAATTTTGATAACGAACAACGTTGACCTTTGTTACAATTAGATTCAAt < 8:1165259/151‑1 (MQ=255)
cTGTTTGTCTCGTCGGTAAGCGAAAAGTAATAAAGTGTCAGCCTGTGTAAATCCTCTCGCCACCCTCCCCTGCATTCAGCAAAATCAGACTCCACGGACATGTAATTTTGATAACGAACAACGTTGACCTTTGTTACAATTAGATTCAAtt > 5:1288208/1‑151 (MQ=255)
gTTTGTCTCGTCGGTAAGCTAAAAGTAATAAAGTGTCAGCCTGTGTAAATCCTCTCGCCACCCTCCCCTGCATTCAGCAAAATCAGACTCCACGGACATGTAATTTTGATAACGAACAACGTTGACCTTTGTTACAATTAGATTCAAtt < 7:1318710/149‑1 (MQ=255)
gTTTGTCTCGTCGGTAAGCGAAAAGTAATAAAGTGTCAGCCTGTGTAAATCCTCTCGCCACCCTCCCCTGCATTCAGCAAAATCAGACTCCACGGACATGTAATTTTGATAACGAACAACGTTGACCTTTGTTACAATTAGATTCAATTTg < 4:1128702/151‑1 (MQ=255)
gTTTGTCTCGTCGGTAAGCGAAAAGTAATAAACTGTCAGCCTGTGTAAATCCTCTCGCCACCCTCCCCTGCATTCAGCAAAATCAGACTCCACGGACATGTAATTTTGATAACGAACAACGTTGACCTTTGTTACAATTAGATTCAAtt < 8:409276/149‑1 (MQ=255)
ttGTCTCGTCGGTAAGCGAAAAGTAATAAAGTGTCAGCCTGTGTAAATCCTCTCGCCACCCTCCCCTGCATTCAGCAAAATCAGACTCCACGGACATGTAATTTTGATAACGAACAACGTTGACCTTTGTTACAATTAGATTCAATTTGa < 3:160221/150‑1 (MQ=255)
tGTCTCGTCGGTAAGCGAAAAGTAATAAAGTGTCAGCCTGTGTAAATCCTCTCGCCACCCTCCCCTGCATTCAGCAAAATCAGACTCCACGGACATGTAATTTTGATAACGAACAACGTTGACCTTTGTTACAATTAGATTCAATTTGAAt > 8:1292004/1‑151 (MQ=255)
tGTCTCGTCGGTAAGCGAAAAGTAATAAAGTGTCAGCCTGTGTAAATCCTCTCGCCACCCTCCCCTGCATTCAGCAAAATCAGACTCCACGGACATGTAATTTTGATAACGAACAACGTTGACCTTTGTTACAATTAGATTCAATTTGAAt > 5:698166/1‑151 (MQ=255)
gTCTCGTCGGTAAGCGAAAAGTAATAAAGTGTCAGCCTGTGTAAATCCTCTCGCCACCCTCCCCTGCATTCAGCAAAATCAGACTCCACGGACATGTAATTTTGATAACGAACAACGTTGACCTTTGTTACAATTAGATTCAATTTGAAtt > 7:209118/1‑151 (MQ=255)
gTCTCGTCGGTAAGCGAAAAGTAATAAAGTGTCAGCCTGTGTAAATCCTCTCGCCACCCTCCCCTGCATTCAGCAAAATCAGACTCCACGGACATGTAATTTTGATAACGAACAACGTTGACCTTTGTTACAATTAGATTCAATTTGAAtt < 1:939463/151‑1 (MQ=255)
gTCTCGTCGCTAAGCGAAAAGTAATAAAGTGTCAGCCTGTGTAAATCCTCTCGCCACCCTCCCCTGCATTCAGCAAAATCAGACTCCACGGACATGTAATTTTGATAACGAACAACGTTGACCTTTGTTACAATTAGATTCAATTTGAAt < 2:1579538/150‑1 (MQ=255)
ggtcgGTTAGCGAAAAGTAATAAAGTGTCAGCCTGTGTAAATCCTCTCGCCACCCTCCCCTGCATTCATCAAAATCAGACTCCACGGACATGTAATTTTGATAACGAACAACGTTGACCTTTGTTACAATTAGATTCAATTTGAATTTATg < 8:579908/150‑1 (MQ=255)
cgtcgGTAAGCGAAAAGTAATAAAGTGTCAGCCTGTGTAAATCCTCTCGCCACCCTCCCCTGCATTCAGCAAAATCAGACTCCACGGACATGTAATTTTGATAACGAACAACGTTGACCTTTGTTACAATTAGATTCAATTTGAATTTa < 6:13469/149‑1 (MQ=255)
cgtcgGTAAGCGAAAAGTAATAAAGTGTCAGCCTGTGTAAATCCTCTCGCCACCCTCCCCTGCATTCAGCAAAATCAGACTCCACGGACATGTAATTTTGATAACGAACAACGTTGACCTTTGTTACAATTAGATTCAATTTGAATTTATg < 1:566901/151‑1 (MQ=255)
gtcgGTAAGCGAAAAGTAATAAAGTGTCAGCGTGTGTAAATCCTCTCGCCACCCTCCCCTGCATTCAGCAAAATCAGACTCCACGGACATGTAATTTTGATAACGAACAACGTTGACCTTTGTTACAATTAGATTCAATTTGAATTTATGt > 7:1090425/1‑151 (MQ=255)
gtcgGTAAGCGAAAAGTAATAAAGTGTCAGCCTGTGTAAATCCTCTCGCCACCCTCCCCTGCATTCAGCAAAATCAGACTCCACGGACATGTAATTTTGATAACGAACAACNTTGACCTTTGTTNCAATTAGATTCAAntntnnnnt > 8:667267/1‑140 (MQ=255)
cgGTAAGCGAAAAGTAATAAAGTGTCAGCCTGTGTAAATCCTCTCGCCACCCTCCCCTGCATTCAGCAAAATCAGACTCCACGGACATGTAATTTTGATAACGAACAACGTTGACCTTTGTTACAATTAGATTCAATTTGAATTTATGttt > 5:62197/1‑151 (MQ=255)
cgGTAAGCGAAAAGTAATAAAGTGTCAGCCTGTGTAAATCCTCTCGCCACCCTCCCCTGCATTCAGCAAAATCAGACTCCACGGACATGTAATTTTGATAACGAACAACGTTGACCTTTGTTACAATTAGATTCAATTTGAATTTATGttt > 5:1348646/1‑151 (MQ=255)
cgGTAAGCGAAAAGTAATAAAGTGTCAGCCTGTGTAAATCCTCTCGCCACCCTCCCCTGCATTCAGCAAAATCAGACTCCACGGACATGTAATTTTGATAACGAACAACGTTGACCTTTGTTACAATTAGATTCAATTTGAATTTATGtt < 2:1162362/150‑1 (MQ=255)
gTAAGCGAAAAGTAATAAAGTGTCAGCCTGTGTAAATCCTCTCGCCACCCTCCCCTGCATTCAGCAAAATCAGACTCCACGGACATGTAATTTTGATAACGAACAACGTTGACCTTTGTTACAATTAGATTCAATTTGAATTTATGttttt < 1:387119/151‑1 (MQ=255)
gTAAGCGAAAAGTAATAAAGTGTCAGCCTGTGTAAATCCTCTCGCCACCCTCCCCTGCATTCAGCAAAATCAGACTCCACGGACATGTAATTTTGATAACGAACAACGTTGACCTTTGTTACAATAAGATTCAAGATGAATTTATGttttt > 2:440956/1‑151 (MQ=255)
tAAGCGAAAAGTAATAAAGTGTCAGCCTGTGTAAATCCTCTCGCCACCCTCCCCTGCATTCAGCAAAATCAGACTCCACGGACATGTAATTTTGATAACGAACAACGTTGACCTTTGTTACAATTAGATTCAATTTGAATTTATGtttttt > 6:1493274/1‑150 (MQ=255)
aGCGAAAAGTAATAAAGTGTCAGCCTGTGTAAATCCTCTCGCCACCCTCCCCTGCATTCAGCAAAATCAGACTCCACGGACATGTAATTTTGATAACGAACAACGTTGACCTTTGTTACAATTAGATTCAATTTGAATTTATGTTTTTGa > 1:140445/1‑150 (MQ=255)
gagAAAAGTAATAAAGTTTCAGCCTTTTTAAATCCTCTCGCCACCCTCCCCTGCATTCAGAAAAATCATACTCCACGGACATGTAATTTTGATAACGAACAACGTTGACCTTTGTTACAATTATATTCAATTTGAATTTATGTTTTTGAAt < 4:217628/149‑1 (MQ=255)
gCGAAAAGTAATAAAGTGTCAGCCTGTGTAAATCCTCTCGCCACCCTCCCCTGCATTCAGCAAAATCAGACTCCACGGACATGTAATTTTGATAACGAACAACGTTGACCTTTGTTACAATTAGATTCAATTTGAATTTATGTTTTTGAAt > 1:108682/1‑151 (MQ=255)
aaaaGTAATAAAGTGTCAGCCTGTGTAAATCCTCTCGCCACCCTCCCCTGCATTCAGCAAAATCAGACTCCACGGACATGTAATTTTGATAACGAACACCGTTGACCTTTGTTACAATTAGATTCAATTTGAATTTATGTTTTTGAATGCt > 5:986692/1‑151 (MQ=255)
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ACCAGCGACGACTTCGAGTTCAATGCCGACCGCTATCTATTCGCCGAAAACCCGGTGGTGCATCTCGATACAGCCACCAGCGGCAGTAAATGAAATTCCTGTCCGACAGGCGCTGCAATGCGCCTGTTTGTCTCGTCGGTAAGCGAAAAGT‑ATAAAGTGTCAGCCTGTGTAAATCCTCTCGCCACCCTCCCCTGCATTCAGCAAAATCAGACTCCACGGACATGTAATTTTGATAACGAACAACGTTGACCTTTGTTACAATTAGATTCAATTTGAATTTATGTTTTTGAATGCTT > NC_000913/3247336‑3247631
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
