Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A4 F84 I5 R1 18 424.9 13427302 97.8% 13131901 150.5

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 1,673,557 Δ120 bp intergenic (‑56/‑237) mdtJ ← / → tqsA multidrug efflux system transporter/pheromone AI‑2 transporter

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 1673557 1673676 120 426 [0] [0] 424 mdtJ/tqsA multidrug efflux system transporter/pheromone AI‑2 transporter

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 16735560 (0.000)418 (1.000) 221/296 0.0 100% intergenic (‑55/‑357) mdtJ/tqsA multidrug efflux system transporter/pheromone AI‑2 transporter
?NC_000913 1673677 = 0 (0.000)intergenic (‑176/‑236) mdtJ/tqsA multidrug efflux system transporter/pheromone AI‑2 transporter

GATK/CNVnator alignment

N/A