Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A7 F90 I8 R1
|
12 |
70.9 |
1364818 |
81.4% |
1110961 |
300.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,442,896 |
A→T |
F401Y (TTC→TAC) |
secY ← |
preprotein translocase membrane subunit |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,442,896 | 0 | A | T | 90.5%
| 187.1
/ 10.0
| 63 | F401Y (TTC→TAC) | secY | preprotein translocase membrane subunit |
| Reads supporting (aligned to +/- strand): ref base A (2/4); new base T (26/31); total (28/35) |
| Fisher's exact test for biased strand distribution p-value = 6.84e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.19e-01 |
GAAAAATATGCGAAAAAATCAGCCTTGGCGCTGTTTATGCTTCGGCTCGGCACTGCAAATCACACGGATGACACCATCACGCTTAACGATTTTGCAGTTACGGCATAATTTCTTGACGGAAGCACGAACTTTCATTTTTACTCTCCGTAACTTCTCGGGCGACCAATTATCGGCCGTAGCCTTTCAGGTTCGCCTTCTTCAATGCAGACTCATACTGACTGGACATCATCAGAGTTTGCACTTGAGCCATAAAGTCCATAATCACGACAACAACGATAAGCAGTGAGGTCCCACCGAAGTAGAACGGTACTTTCATTGCATCACGCATGAACTCCGGGATCAGGCAGATAAAGGTAATATACAGCGCACCAACCAGGGTCAGGCGGGTCATTACTTTATCGATATACTTCGCCGTTTGCTCTCCCGGACGAATTCCTGGTACAAATGCACCGGACTTCTTCAGGTTATCTGCTGTTTCACGCGGGTTGAAAACCAACGCCGTGTAGAAGAAACAGAAGAAGATGATTGCAGACGCATAGAGTAACACATAAAGCGGTTGCCCAGGCTGCAAATACAGCGAAATTGTTGTC > NC_000913/3442600‑3443189
|
gAAAAATATGCGAAAAAATCAGCCTTGGCGCTGTTTATGCTTCGGCTCGGCACTGCAAATCACACGGATGACACCATCACGCTTAACGATTTTGCAGTTACGGCATAATTTCTTGACGGAAGCACGAACTTTCATTTTTACTCTCCGTAACTTCTCGGGCGACCAATTATCGGCCGTAGCCTTTCAGGTTCGCCTTCTTCAATGCAGACTCATACTGACTTGACATCATCAGAGTTTGCACTTGAGCCATAAAGTCCATAATCACGACAACAACGATAAGCAGTGAGGTCCCACCgtagta > 2:387427/1‑301 (MQ=255)
tatGCGAAAAAATCAGCCTTGGCGCTGTTTATGCTTCGGCTCGGCACTGCAAATCACACGGATGACACCATCACGCTTAACGATTTTGCAGTTACGGCATAATTTCTTGACGGAAGCACGAACTTTCATTTTTACTCTCCGTAACTTCTCGGGCGACCAATTATCGGCCGTAGCCTTTCAGGTTCGCCTTCTTCAATGCAGACTCATACTGACTGGACATCATCAGAGTTTGCACTTGAGCCATAAAGTCCATAATCACGACAACAACGATAAGCAGTGAGGTCCCACCGTAGTAGAACgg < 2:122682/301‑1 (MQ=255)
tatGCGAAAAAATCAGCCTTGGCGCTGTTTATGCTTCGGCTCGGAACTGCAAATCACACGGATGACACCATCAGGCTTAACGATTTTGCAGTTACGGCATAATTTCTTGACGGAAGCACGAACTTTCATGTTTACTCTCCGTAACTTCTCGGGCGACCAATTATCGGCCGTAGCCTTTCAGGTTCGCCTTCTTCAATGCAGACTCATACTGACTGGACATCATCAGAGTTTGAACTTGAGCCATAAAGTCCATAATCACGACAACAACGATAAGCAGTGAGGTCCCACCGTAGTAGAACgg < 1:221647/301‑1 (MQ=255)
aatGCGAAAAAATCAGCCTTGGCGCTGTTTATGCTTCGGCTCGGCACTGCAAATCACACGGATGACACCATCACGCTTAACGATTTTGCAGTTACGGCATAATTTCTTGACGGAAGCACGAACTTTCATTTTTACTCTCCGTAACTTCTCGGGCGACCAATTATCGGCCGTAGCCTTTCAGGTTCGCCTTCTTCAATGCAGACTCATACTGACTGGACATCATCAGAGTTTGCACTTGAGCCATAAAGTCCATAATCACGACAACAACGATAAGCAGTGAGGTCCCACCGTAGTAGAACgg < 2:582143/300‑1 (MQ=255)
cGAAAAAATCAGCCTTGGCGCTGTTTATGCTTCGGCTCGGCACTGCAAATCACACGGATGACACCATCACGCTTAACGATTTTGCAGTTAAGGCATAATTTCTTGACGGAAGCACGACCTTTCATTTTTACTCTCCGTAACTTCTCGGTCGACCAATCATCGTCCGTAGCCTTTCAGGTTCGCCTTCTTCAATGCAGACTCATACTGACTGGTCATCATCAGAGTTTTCATTTGAACCATAAAGTCCTTAATCACGACAACAACGATAAGCAGTGAGGACACAACCTAGTAGAACGTTaat > 1:226635/1‑299 (MQ=255)
tGCTTCGGCTCGGCACTGCAAATCACACGGATGACACCATCACGCTTAACGATTTTGCAGTTACGGCATAATTTCTTGACGGAAGCACGAACTTTCATTTTTACTCTCCGTAACTTCTCGGGCGACCAATTATCGGCCGTAGCCTTTCAGGTTCGCCTTCTTCAATGCAGACTCATACTGACTGGACATCATCAGAGTTTGCACTTGAGCCATAAAGTCCATAATCACGACAACAACGATAAGCAGTGAGGTCCCACTGTAGTAGAACGGTACTTTCATTGCATCACGCATGAACTCCggg > 2:572382/1‑301 (MQ=255)
gCTTCGGCTCGGCACTGCGAATCACACGGATGACACCATCACGCTTAACGATTTTGCAGTTACGGCATAATTTCTTGACGGAAGCACGAACTTTCATTTTTACTCTCCGTAACTTCTCGGGCGACCAATTATCGGCCGTAGCCTTTCAGGTTCGCCTTCTTCAATGCAGACTCATACTGACTGGACATCATCAGAGTTTGCACTTGAGCCATAAAGTCCATAATCACGACAACAACGATAAGCAGTGAGGTCCCACCGTAGTAGAACGGTACTTTCATTGCATCACGCATGAACTCCGGGa > 2:286311/1‑301 (MQ=255)
tcggctcggcACTGCAAATCACACGGATGACACCATCACGCTTAACGATTTTGCAGTTACGGCATAATTTCTTGACGGAAGCACGAACTTTCATTTTTACTCTCCGTAACTTCTCGGGCGACCAATTATCGGCCGTAGCCTTTCAGGTTCGCCTTCTTCAATGCAGACTCATACTGACTGGACATCATCAGAGTTTGCACTTGAGCCATAAAGTCCATAATCACGACAACAACGATAAGCAGTGAGGTCCCACCGAAGTAGAACGGTACTTTCATTGCATCACGCATGAACTCCGGGATCa > 2:100785/1‑301 (MQ=255)
ctcggcCCTGCAAATCACACGGATGACACCATCACGCTCTACGATTTTGCAGTTACGGCATAATTTCTTGACGGAAGAACGAACTTTCCTTTTTACTCTCCCTAACTTTGCGGGCGACCAATTATCCGCCATAGCCTTTCAGGTTCGCCTTCTTCTATTCGGACTCGTACTGACTGGAAGTCATCAGAATTTGCACTTTAACCATAAAGTCCGTAATCACGACAACAACGATAAGCAGTGAGGTCCCACCGAAGTAGAACGGTACTTTCATTGCATCTCGCATGAACTCCGGGATCAGGc < 1:296051/300‑1 (MQ=255)
ctcggcACTGCAAAGCACACGGATGACACCATCACGCTTAACGATTGTGCAGTTACGGCATAATTTCTTGACGGAAGCACGAACTTTCATTTTTACTCTCCGTAACTTCTCGGGCGACCAATTATCGGCCGTAGCCTTTCAGGTTCGCCTTCTTCAATGCAGACTCATACTGACTGGACATCATCAGAGTGTGCACTGGAGCCATAAAGTCCATAATCACGACAACAACGATAAGCAGTGAGGTCCCACCGTAGTAGAACGGTACTTTCATTGCATCACGCATGAACTCCGGGATCAGGc < 2:596952/300‑1 (MQ=255)
ccTGCGAATAACACGGATGACACCATCACGCTTAACGATTTTGCAGTTACGGCTTAATTTCTTGACGGAAGCACGAACTTTCCTTTTTACTCTCCGTAACTTCTCGGGCGACCAATTATCGGCCATAGCCTTTCAGGTTCGCCTTCTTCAATGCAGACTCATACTGACTGGACATCATCAGAGTTAGCACTTGAGCCATAAAGTCCATAATCACGACAACAACGATAAGCAGTGAGGTCCCAACGTAGTAGAAAGGTACTTTAATTGCATCAAGCATGAACTCCGGGATCAGGCAGATaaa < 1:45689/300‑1 (MQ=255)
aTCACACGGATGACACCATCACGCTTAACGATTTTGCAGTTACGGCATAATTTCTTGACGGAAGCACGAACTTTCATTTTTACTCTCCGTAACTTCTCGGGCGACCAATTATCGGCCGTAGCCTTTCAGGTTCGCCTTCTTCAATGCAGACTCATACTGACTGGACATCATCAGAGTTTGCACTTGAGCCATAAAGTCCATAATCACGACAACAACGATAAGCAGTGAGGTCCCACCGAAGTAGAACGGTACTTTCATTGCATCACGCATGAACTCCGGGATCAGGCAGATAAAGGTAata < 1:236706/301‑1 (MQ=255)
aTGACACCATCACGCTTAACGATTTTGCAGTTACGGCATAATTTCTTGACGGAAGCACGAACTTTCATTTTTACTCTCCGTAACTTCTCGGGCGACCAATTATCGGCCGTAGCCTTTCAGGTTCGCCTTCTTCAATGCAGACTCATACTGACTGGACATCATCAGAGTTTGCACTTGAGCCATAAAGTCCATAATCACGACAACAACGATAAGCAGTGAGGTCCCACCGTAGTAGAACGGTACTTTCATTGCATCACGCATGAACTCCGGGATCAGGCAGATAAAGGTAATATACAGCGCa > 1:34072/1‑301 (MQ=255)
tgaaaacagaaagcgaaaCGATAGTGCAGTGGTGGCATAATTTGTGTACGGAAGCACGAACTTTCAGTTTTACAAGCCTTAACTTCTCAGAAGACCGATAATCGACAGTAGAACTTAAGGTACGCATAATTCAAGGCAGAATCATACTGACTGGACATCATCAGAGTTTGCACTTGAGCGAAAAAGGCAAGAATCACGACAACAACGATAAGCAGTGAGGTCACACCGTAGTAGAACGGTACGTGCATTGCATCACGCATGAACTGAGGGATAAGGCAGATAAAGGTAATATACAGCGCac < 1:363171/285‑1 (MQ=255)
acacCATCACGCTTAACGATTTTGCAGTTACGGCATAATTTCTTGACGGAAGCACGAACTTTCATTTTTACTCTCCGTAACTTCTCGGGCGACCAATTATCGGCCGTAGCCTTTCAGGTTCGCCTTCTTCAATGCAGACTCATACTGACTGGACATCATCAGAGTTTGCACTTGAGCCATAAAGTCCATAATCACGACAACAACGATAAGCAGTGAGGTCCCACCGTAGTAGAACGGTACTTTCATTGCATCACGCATGAACTCCGGGATCAGGCAGATAAAGGTAATATACAGCGCacca > 2:414142/1‑301 (MQ=255)
acacCATCACGCTTAACGATTTTGCAGTTACGGCATAATTTCTTGACGGAAGCACGAACTTTCATTTTTACTCTCCGTAACTTCTCGGGCGACCAATTATCGGCCGTAGCCTTTCAGGTTCGCCTTCTTCAATGCAGACTCATACTGACTGGACATCATCAGAGTTTGCACTTGAGCCATAAAGTCCATAATCACGACAACAACGATAAGCAGTGAGGTCCCACCGTAGTAGAACGGTACTTTCATTGCATCACGCATGAACTCCGGGATCAGGCAGATAAAGGTAATATACAGCGCacca > 2:630975/1‑301 (MQ=255)
acacCATCACGCTTAACGATTTTGCAGTTACGGCATAATTTCTTGACGGAAGCACGAACTTTCATTTTTACTCTCCGTAACTTCTCGGGCGACCAATTATCGGCCGTAGCCTTTCAGGTTCGCCTTCTTCAATGCAGACTCATACTGACTGGACATCATCAGAGTTTGCACTTGAGCCATAAAGTCCATAATCACGACAACAACGATAAGCAGTGAGGTCCCACCGTAGTAGAACGGTACTTTCATTGCATCACGCATGAACTCCGGGATCAGGCAGATAAAGGTAATATACAGCGCacca > 2:136343/1‑301 (MQ=255)
ccATCACGCTTAACGATTTTGCAGTTACGGCATAATTTCTTGACGGAAGCACGAACTTTCATTTTTACTCTCCGTAACTTCTCGGGCGACCAATTATCGGCCGTAGCCTTTCAGGTTCGCCTTCTTCAATGCAGACTCATACTGACTGGACATCATCAGAGTTTGCACTTGAGCCATAAAGTCCATAATCACGACAACAACGATAAGCAGTGAGGTCCCACCGTAGTAGAACGGTACTTTCATTGCATCACGCATGAACTCCGGGATCAGGCAGATAAAGGTAATATACAGCGCaccaac > 2:305552/1‑300 (MQ=255)
cACGCTTAACGATTTTGCAGTTACGGCATAATTTCTTGACGGAAGCACGAACTTTCATTTTTACTCTCCGTAACTTCTCGGGCGACCAATTATCGGCCGTAGCCTTTCAGGTTCGCCTTCTTCAATGCAGACTCATACTGACTGGACATCATCAGAGTTTGCACTTGAGCCATAAAGTCCATAATCACGACAACAACGATAAGCAGTGAGGTCCCACCGTAGTAGAACGGTACTTTCATTGCATCACGCATGAACTCCGGGATCAGGCAGATAAAGGTAATATACAGCGCACCAACCAggg < 2:648245/301‑1 (MQ=255)
gTTACGGCATAATTTCTTGACGGAAGCACGAACTTTCATTTTTACTCTCCGTAACTTCTCGGGCGACCAATTATCGGCCGTAGCCTTTCAGGTTCGCCTTCTTCAATGCAGACTCATACTGACTGGACATCATCAGAGTTTGCACTTGAGCCATAAAGTCCATAATCACGACAACAACGATAAGCAGTGAGGTCCCACCGAAGTAGAACGGTACTTTCATTGCATCACGCATGAACTCCGGGATCAGGCAGATAAAGGTAATATACAGCGCACCAACCAGGGTAAGGCGGGTCATTACttt > 1:297439/1‑301 (MQ=255)
gCATAATTTCTTGACGGAAGCACGAACTTTCATTTTTACTCTCCGTAACTTCTCGGGCGACCAATTATCGGCCGTAGCCTTTCAGGTTCGCCTTCTTCAATGCAGACTCATACTGACTGGACATCATCAGAGTTTGCACTTGAGCCATAAAGTCCATAATCACGACAACAACGATAAGCAGTGAGGTCCCACCGTAGTAGAACGGTACTTTCATTGCATCACGCATGAACTCCGGGATCAGGCAGATAAAGGTAATATACAGCGCACCAACCAGGGTCAGGCGGGTCATTACTTTATCGa < 2:285171/300‑1 (MQ=255)
gCATAAGTTCTTGACGGAAGCACGAACTTTCATTGTTACTCTCCGTAACTTCTCGGGCGACCAATTATCGGCCGTAGCCTTTCAGGTTCGCCTTCATAAATGCAGACTCATACTGACTGGACATCATCAGGGTTTGCACTTGAGCCATAAAGTCCATAATCACGACAACAACGGTAAGCAGTGAGGTCCCACCGTAGTAGAACGGTACTTTCATTGCATCACTCATGAACTCCGGGATCAGGAAGATAAAGGTAATATACAGCGCCCCAACCAGCGTAAGGCGGGTCATTACTTTATCGa < 1:387422/300‑1 (MQ=255)
cTTGACGGAAGCACGAACTTTCATTTTTACTCTCCGTAACTTCTCGGGCGACCAATTATCGGCCGTAGCCTTTCAGGTTCGCCTTCTTCAATGCAGACTCATACTGACTGGACATCATCAGAGTTTGCACTTGAGCCATAAAGTCCATAATCACGACAACAACGATAAGCAGTGAGGTCCCACCGAAGTAGAACGGTACTTTCATTGCATCACGCATGAACTCCGGGATCAGGCAGATAAAGGTAATATACAGCGCACCAACCAGGGTCAGGCGGGTCATTACTTTATCGATATACTTCGc < 2:297443/301‑1 (MQ=255)
tGACGGAAGAACGAACTTTCATTTTTACTCTCCGTAACTTCTCGTGCGACCAATTATCGGCCGTAGCCTTTCAGGTTCGCCTTCTTCAATGCAGACTCATACTGACTGGACATCATCAGAGTTTGCACTTGAGCCATAAAGTCCATAATCACGACAACAACGATAAGCAGTGAGGTCCCACCGAAGTAGAACGGTACTTTCATTGCATCACGCATGAACTCCGGGATCAGGCAGATAAAGGTAATATACAGCGCACCAACCAGGGTCAGGCGGGTCATTACTTTATCGATATACTTCGCCg < 1:100784/301‑1 (MQ=255)
aaCTTTCA‑TTTTACTCTCCGTAACTTCTCGGGCGACCAATTATCGGCCGTAGCCTTTCAGGTTCGCCTTCTTCAATGCAGACTCATACTGACTGGACATCATCAGAGTTTGCACTTGAGCCATAAAGTCCATAATCACGACAACAACGATAAGCAGTGAGGTCCCACCGTAGTAGAACGGTACTTTCATTGCATCACGCATGAACTCCGGGATCAGGCAGATAAAGGTAATATACAGCGCACCAACCAGGGTCAGGCGGGTCATTACTTTATCGATATACTTCGCCGTTTGCTCTCCCGGa < 2:310470/301‑1 (MQ=255)
tACTCTCCGTAACTTCTCGGGCGACCAATTATCGGCCGTAGCCTTTCAGGTTCGCCTTCTTCAATGCAGACTCATACTGACTGGACATCATCAGAGTTTGCACTTGAGCCATAAAGTCCATAATCACGACAACAACGATAAGCAGTGAGGTCCCACCGTAGTAGAACGGTACTTTCATTGCATCACGCATGAACTCCGGGATCAGGCAGATAAAGGTAATATACAGCGCACCAACCAGGGTCAGGCGGGTCATTACTTTATCGATATACTTCGCCGTTTGCTCTCCCGGACGAATTCCTgg < 1:414135/301‑1 (MQ=255)
tACTCTCCGTAACTTCTCGGGCGACCAATTATCGGCCGTAGCCTTTCAGGTTCGCCTTCTTCAATGCAGACTCATACTGACTGGACATCATCAGAGTTTGCACTTGAGCCATAAAGTCCATAATCACGACAACAACGATAAGCAGTGAGGTCCCACCGTAGTAGAACGGTACTTTCATTGCATCACGCATGAACTCCGGGATCAGGCAGATAAAGGTAATATACAGCGCACCAACCAGGGTCAGGCGGGTCATTACTTTATCGATATACTTCGCCGTTTGCTCTCCCGGACGAATTCCTgg < 2:384405/301‑1 (MQ=255)
ctcCGTAACTTCTCGGGCGACCAATTATCGGCCGTAGCCTTTCAGGTTCGCCTTCTTCAATGCAGACTCATACTGACTGGACATCATCAGAGTTTGCACTTTAGCCATAAAGTCCATAATCACGACAACAACGATAAGCAGTGAGGTCCCACCGTACTAGAACGCAACCTTCATTGCATCACGCCTGAACTCCGGGATCAGGCAGCTACCGGTAATATACAGCGCACCCACCCGCGCCCGCCGGGTCCTTACCCTCTCGATCTACTTCGCCGTTTGCTCCCCCGCACCAACTccgcctac > 1:452208/1‑294 (MQ=255)
ctcGGGCGACCAATTATCGGCCGTAGCCTTTCAGGTTCGCCTTCTTCAATGCAGACTCATACTGACTGGACATCATCAGAGTTTGCACTTGAGCCATAAAGTCCATAATCACGACAACAACGATAAGCAGTGAGGTCCCACCGTAGTAGAACGGTACTTTCATTGCATCACGCATGAACTCCGGGATCAGGCAGATAAAGGTAATATACAGCGCACCAACCAGGGTCAGGAGGGTCATTACTTTATCGATATACTTCGCCGTTTGCGCCACCGGACGAATTCCTGGTACAAATGCACCGGa > 1:409415/1‑301 (MQ=255)
cAATTATCGGCCGTAGCCTTTCAGGTTCGCCTTCTTCAATGCAGACTCATACTGACTGGACATCATCAAAATTTGCACTTGAGCCATAAAGTCCATAATCACGACAACAACGATAAGCAGTGAGGTCCCACCGTAGTAGGACGGTACTTTCATTGCATCACGCATGAACTCCGGGATCAGGCAGATAAAGGTAATATACAGCACACCAACCAGGGTCAGGCGGATCATTACTTTATCGATATACTTCGCCGTTTGCTCTCCCAGACGAATTCCTGGTACAAATGCACCGGACTTCTTCAgg < 1:572371/301‑1 (MQ=255)
aaTTATCGGCCGTAGCCTTTCAGGTTCGCCTTCTTCAATGCAGACTCATACTGACTGGACATCATCAGAGTTTGCACTTGAGCCATAAAGTCCATAATCACGACAACAACGATAAGCAGTGAGGTCCCACCGTAGTAGAACGGTACTTTCATTGCATCACGCATGAACTCCGGGATCAGGCAGATAAAGGTAATATACAGCGCACCAACCAGGGTCAGGCGGGTCATTACTTTATCGATATACTTCGCCGTTTGCTCTCCCGGACGAATTCCTGGTACAAATGCACCGGACTTCTTCAGGt < 1:286307/301‑1 (MQ=255)
ccgatctgTAGCCTTTCAGGTTCGCCTTCTTCAATGCAGACTCATACTGACTGGACATCATCAGAGTTTGCACTTGAGCCATAAAGTCCATAATCACGACAACAACGATAAGCAGTGAGGTCCCACCGTAGTAGAACGGTACTTTCATTGCATCACGCATGAACTCCGGGATCAGGCAGATAAAGGTAATATACAGCGCACCAACCAGGGTCAGGCGGGTCATTACTTTATCGATATACTTCGCCGTTTGCTCTCCCGGACGAATTCCTGGTACAAATGCACCGGACTTCTTCAGGTTATc < 2:271086/294‑1 (MQ=255)
aTCGGCCGTAGCCTTTCAGGTTCGCCTTCTTCAATGCAGACTCATACTGACTGGACATCATCAGAGTTTGCACTTGAGCCATAAAGTCCATAATCACGACAACAACGATAAGCAGTGAGGTCCCACCGTAGTAGAACGGTACTTTCATTGCATCACGCATGAACTCCGGGATCAGGCAGATAAAGGTAATATACAGCGCACCAACCAGGGTCAGGCGGGTCATTACTTTATCGATATACTTCGCCGTTTGCTCTCCCGGACGAATTCCTGGTACAAATGCACCGGACTTCTTCAGGTTAt > 2:358441/1‑300 (MQ=255)
ggCCGTAGCCTTTCAGGTTCGCCTTCTTCAATGCAGACTCATACTGACTGGACATCATCAGAGTTTGCACTTGAGCCATAAAGTCCATAATCACGACAACAACGATAAGCAGTGAGGTCCCACCGTAGTAGAACGGTACTTTCATTGCATCACGCATGAACTCCGGGATCAGGCAGATAAAGGTAATATACAGCGCACCAACCAGGGTCAGGCGGGTCATTACTTTATCGATATACTTCGCCGTTTGCTCTCCCGGACGAATTCCTGGTACAAATGCACCGGACTTCTTCAGGTTATctg > 2:431367/1‑300 (MQ=255)
gTAGCCTTTCAGGTTCGCCTTCTTCAATGCAGACTCATACTGACTGGACATCATCAGAGTTTGCACTTGAGCCATAAAGTCCATAATCACGACAACAACGATAAGCAGTGAGGTCCCACCGTAGTAGAACGGTACTTTCATTGCATCACGCATGAACTCCGGGATCAGGCAGATAAAGGTAATATACAGCGCACCAACCAGGGCCAGGCGGGTCATTACTTTATCGATATACTTCGCCGTTTGCCCTCCCGGACGAATTCCTGGTACAAATGCACCGGACTTCTTCAGGTTATcagatcgg > 1:271082/1‑294 (MQ=255)
ccTTTCAGGTTCGCCTTCTTCAATGCAGACTCATACTGACTGGACATCATCAGAGTTTGCACTTGAGCCATAAAGTCCATAATCACGACAACAACGATAAGCAGTGAGGTCCCACCGTAGTAGAACGGTACTTTCATTGCATCACGCATGAACTCCGGGATCAGGCAGATAAAGGTAATATACAGCGCACCAACCAGGGTCAGGCGGGTCATTACTTTATCGATATACTTCGCCGTTTGCTCTCCCGGACGAATTCCTGGTACAAATGCACCGGACTTCTTCAGGTTATCTGCTGTTTc < 2:452215/299‑1 (MQ=255)
tCAGGTTCGCCTTCTTCAATGCAGACTCATACTGACTGGACATCATCAGAGTTTGCACTTGAGCCATAAAGTCCATAATCACGACAACAACGATAAGCAGTGAGGTCCCACCGTAGTAGAACGGTACTTTCATTGCATCACGCATGAACTCCGGGATCAGGCAGATAAAGGTAATATACAGCGCACCAACCAGGGTCAGGCGGGTCATTACTTTATCGATATACTTCGCCGTTTGCTCTCCCGGACGAATTCCTGGTACAAATGCACCGGACTTCTTCAGGTTATCTGCTGTTTCACGCgg < 2:34072/301‑1 (MQ=255)
cAGGTTCGCCTTCTTCAATGCAGACTCATACTGACTGGACATCATCAGAGTTTGCACTTGAGCCATAAAGTCCATAATCACGACAACAACGATAAGCAGTGAGGTCCCACCGTAGTAGAACGGTACTTTCATTGCATCACGCATGAACTCCGGGATCAGGCAGATACAGGTAATATACAGCGCACCAACCAGGGTCAGGCGGGTCATTACTTTATCGATATACTTCGCCGTTTGCTCTCCCGGACGAATTCCTGGTACAAATGCACCGGACTTCTTCAGGTTATCTGCTGTTTCACGCggg > 1:24076/1‑301 (MQ=255)
attCGCCTTCTTCAATGCAGACTCATACTGACTGGACATCATCAGAGTTTGCACTTGAGCCATAAAGTCCATAATCACGACAACAACGATAAGCAGTGAGGTCCCACCGTAGTAGAACGGTACTTTCATTGCATCACGCATGAACTCCGGGATCAGGCAGATAAAGGTAATATACAGCGCACCAACCAGGGTCAGGCGGGTCATTACTTTATCGATATACTTCGCCGTTTGCTCTCCCGGACGAATTCCTGGTACAAATGCACCGGACTTCTTCAGGTTATCTGCTGTTTCACGCGGGtt < 1:41039/299‑1 (MQ=255)
ttCGCCTTCTTCAATGCAGCCTCATACTGACTGGACATCATCCGAGTTTGCACTTGAGCCATAAAGTCCATAATCACGACAACAACGATAAGCAGTGAGGTCCCACCGTAGTAGAACGGTACTTTCATTGCATCACGCATGAACTCCGGGATCAGGCAGATAAAGGTAATATACAGCGCACCAACCAGGGTCAGGCGGGTCATTACTTTATCGATATACTTCGCCGTTTGCTCTCCCGGACGAATTCCTGGTACAAATGCACCGGACTTCTTCAGGTTATCTGCTGTTTCACGCGGGTTg < 1:358436/300‑1 (MQ=255)
tCGCCTTCTTCAATGCAGACTCATACTGACTGGACATCATCAGAGTTTGCACTTGAGCCATAAAGTCCATAATCACGACAACAACGATAAGCAGTGAGGTCCCACCGTAGTAGAACGGTACTTTCATTGCATCACGCATGAACTCCGGGATCAGGCAGATAAAGGTAATATACAGCGCACCAACCAGGGTCAGGCGGGTCATTACTTTATCGATATACTTCGCCGTTTGCTCTCCCGGACGAATTCCTGGTACAAATGCACCGGACTTCTTCAGGTTATCTGCTGTTTCACGCGGGTTGaa > 1:541208/1‑301 (MQ=255)
cttcttCAATGCAGACTCATACTGACTGGACATCATCAGAGTTTGCACTTGAGCCATAAAGTCCATAATCACGACAACAACGATAAGCAGTGAGGTCCCACCGTAGTAGAACGGTACTTTCATTGCATCACGCATGAACTCCGGGATCAGGCAGATAAAGGTAATATACAGCGCACCAACCAGGGTCAGGCGGGTCATTACTTTATCGATATACTTCGCCGTTTGCTCTCCCGGACGAATTCCTGGTACAAATGCACCGGACTTCTTCAGGTTATCTGCTGTTTCACGCGGGTTGAAAAcc < 2:24076/301‑1 (MQ=255)
tcttcAATGCAGACTCATACTGACTGGACATCATCAGAGTTTGCACTTGAGCCATAAAGTCCATAATCACGACAACAACGATAAGCAGTGAGGTCCCACCGTAGTAGAACGGTACTTTCATTGCATCACGCATGAACTCCGGGATCAGGCAGATAAAGGTAATATACAGCGCACCAACCAGGGTCAGGCGGGTCATTACTTTATCGATATACTTCGCCGTTTGCTCTCCCGGACGAATTCCTGGTACAAATGCACCGGACTTCTTCAGGTTATCTGCTGTTTCACGCGGGTTGAAAACCaa < 2:574270/301‑1 (MQ=255)
ttcAATGCAGACTCATACTGACTGGACATCATCAGAGTTTGCACTTGAGCCATAAAGTCCATAATCACGACAACAACGATAAGCAGTGAGGTCCCACCGTAGTAGAACGGTACTTTCATTGCATCACGCATGAACTCCGGGATCAGGCAGATAAAGGTAATATACAGCGCACCAACCAGGGTCAGGCGGGTCATTACTTTATCGATATACTTCGCCGTTTGCTCTCCCGGACGAATTCCTGGTACAAATGCACCGGACTTCTTCAGGTTATCTGCTGTTTCACGCGGGTTGAAAACCAACg < 2:541218/301‑1 (MQ=255)
aaaTGCAGACTCATACTGACTGGACATCATCAGAGTTTGCACTTGAGCCATAAAGTCCATAATCACGACAACAACGATAAGCAGTGAGGTCCCACCGTAGTAGAACGGTACTTTCATTGCATCACGCATGAACTCCGGGATCAGGCAGATAAAGGTAATATACAGCGCACCAACCAGGGTCAGGCGGGTCATTACTTTATCGATATACTTCGCCGTTTGCTCTCCCGGACGAATTCCTGGTACAAATGCACCGGACTTCTTCAGGTTATCTGCTGTTTCACGCGGGTTGAAAACCAACGcc < 1:136342/300‑1 (MQ=255)
gACTCATACTGACTGGACATCATCAGAGTTTGCACTTGAGCCATAAAGTCCATAATCACGACAACAACGATAAGCAGTGAGGTCCCACCGTAGTAGAACGGTACTTTCATTGCATCACGCATGAACTCCGGGATCAGGCAGATAAAGGTAATATACAGCGCACCAACCAGGGTCAGGCGGGTCATTACTTTATCGATATACTTCGCCGTTTGCTCTCCCGGACGAATTCCTGGTACATATGCACCGGACTTCTTCAGGTTATCTGCTGTTTCACGCGGGTTGAAAACCAACGCCGTGTaga > 2:524898/1‑301 (MQ=255)
tCATACTGACTGGACATCATCAGAGTTTGCACTTGAGCCATAAAGTCCATAATCACGACAACAACGATAAGCAGTGAGGTCCCACCGTAGTAGAACGGTACTTTCATTGCATCACGCATGAACTCCGGGATCAGGCAGATAAAGGTAATATACAGCGCACCAACCAGGGTCAGGCGGGTCATTACTTTATCGATATACTTCGCCGTTTGCTCTCCCGGGCGAATTCCTGGTACAAATGCACCGGACTTCTTCAGGTTATCTGCTGTTTCACGCGGGTTGAAAACCAACGCCGTGTagaaga < 2:226639/301‑1 (MQ=255)
ctcttccgatcttcatcaGAGTTTGCACTTGAGCCATAAAGTCCATAATCACGACAACAACGATAAGCAGTGAGGTCCCACCGTAGTAGAACGGTACTTTCATTGCATCACGCATGAACTCCGGGATCAGGCAGATAAAGGTAATATACAGCGCACCAACCAGGGTCAGGCGGGTCATTACTTTATCGATATACTTCGCCGTTTGCTCTCCCGGACGAATTCCTGGTACAAATGCACCGGACTTCTTCAGGTTATCTGCTGTTTCACGCGGGTTGAAAACCAACGCCGTGTAGAAGAAACa < 2:414412/289‑1 (MQ=255)
ctgactgGACATCATCAGAGTTTGCACTTGAGCCATAAAGTCCATAATCACGACAACAACGATAAGCAGTGAGGTCCCACCGTAGTAGAACGGTACTTTCATTGCATCACGCATGAACTCCGGGATCAGGCAGATAAAGGTAATATACAGCGCACCAACCAGGGTCAGGAGGGTCATTACTTTACCGATATACTTCGCCGTTTGCTCTCCCGGACGAATTCCTGGTACAAATGCATCGGACTTCTACAGGCTATCTGCTGTTTCACGCGGGTTGAAAACCAACGCCGTGTAGCAGAAACag > 1:139090/1‑301 (MQ=255)
actgGAGATCATAAGAGTTTGCACTTGAGCCATAAAGACCAGCATCACGACAACAACGATAAGCAGTGAGGTCCCACCGTAGTAGAACGGTACTTTCATTGCATCTCGCATGAACTCCGGGATCAGGCAGATAAAGGTAATATACAGCGCACCAACCAGGGTCATGCGGGTCATTACTTTATCGATATACTTCGCCGTTTGCTCTCCCGGACGAATTCCTGGTACAAATGCACCGGACTTCTTCAGGTTATCTGCTGTTTCACGCGGGTTGAAAACCAACGCCGTGTAGAAGAAACagaag < 1:279190/301‑1 (MQ=255)
tgGACATCAGCAGAGTTTGCACTTGAGCCATAAAATCCATAATCACGACCACAACGATAAGCAGTGAGGTCCCACCGTAGTAGAACGGTACTTTCATTGCATCACGCATAAACTCCGGGATCAGGCAGATAAAGGTAATATACAGCGCACCAACCAGGGTCAGGCGAGTCATTACTTTATCGATATACTTCGCCGTTTGCTCTCCCGGACGAATTCCTGGTACAAATGCACCGGACTTCTTCAGGTTATCTGCTGTTTCACGCGGGTTGAAAACCAACGCCGTGTAGAAGAAACagaagaa < 2:139091/301‑1 (MQ=255)
tcatcaGAGTTTGCACTTGAGCCATAAAGTCCATAATCACGACAACAACGATAAGCAGTGAGGTCCCACCGTAGTAGAACGGTACTTTCATTGCATCACGCATGAACTCCGGGATCAGGCAGATAAAGGTAATATACAGCGCACCAACCAGGGTCAGGCGGGTCATTACTTTATCGATATACTTCGCCGTTTGCTCTCCCGGACGAATTCCTGGTACAAATGCACCGGACTTCTTCAGGTTATCTGCTGTTTCACGCGGGTTGAAAACCAACGCCGTGGAGaacaaacaagatcggaagag > 1:414405/1‑289 (MQ=255)
cACTTGAGCCATAAAGTCCATAATCACGACAACAACGATAAGCAGTGAGGTCCCACCGTAGTAGAACGGTACTTTCATTGCATCACGCATGAACTCCGGGATCAGGCAGATAAAGGTAATATACAGCGCACCAACCAGGGTCAGGCGGGTCATTACTTTATCGATATACTTCGCCGTTTGCTCTCCCGGACGAATTCATGGTACAAATGCACCGGACTTCTCTAGGTTATCTGCTGTTTCACGCGGGTTGAAAACCAACGCCGTGTcgaagatcggaagagcgtcgggtagggaaagagtg > 1:128298/1‑272 (MQ=255)
aCTTGAGCCATAAAGTCCATAATCACGACAACAACGATAAGCAGTGAGGTCCCACCGTAGTAGAACGGTACTTTCATTGCATCACGCATGAACTCCGGGATCAGGCAGATAAAGGTAATATACAGCGCACCAACCAGGGTCAGGCGGGTCATTACTTTATCGATATACTTCGCCGTTTGCTCTCCCGGACGAATTCCTGGTACAAATGCACCGGACTTCTTCAGGTTATCTGCTGTTTCACGCGGGTTGAAAACCAACGCCGTGTAGAAGAAACAGAAGAAGATGATTGCAGACGCATaga > 1:548199/1‑301 (MQ=255)
aTCACGACAACAACGATAAGCAGTGAGGTCCCACCGTAGTAGAATGGTACTTTCATTGCATCACGCATGAACTCCGGGATCAGGCAGATAAAGGTAATATACAGCGAACCAACCAGGGTCAGGCGGGTCATTACTTTATCGATATACTTCGCCGTTTGCTCTCCCGGACGAATTCCTGGTACAAATGCACCGGCCTTCTTCAGGTTATCTGCTGTTTCACTCGGGTCGAAAACCAACGCCGTGTAGAAGCAACTGTAGAAGATGATTGAAGACTCACAGAGTAACACATAAAGCGGTTGc > 1:572288/1‑300 (MQ=255)
aTCACGACAACAACGATAAGCAGTGAGGTCCCACCGTAGTAGAACGGTACTTTCATTGCATCACGCATGAACTCCGGGATCAGGCAGATAAAGGTAATATACAGCGCACCAACCAGGGTCAGGCGGGTCATTACTTTATCGATATACTTCGCCGTTTGCTCTCCCGGACGAAATCCTGGTACAAATGCACCGGACTTCTTCAGGTTATCTGCTGTTTCACGCGGGTTGAAAACCAACGCCGTGTAGAAGAAAAAGAAGAAGATGATTGCAGACGCATAGAGTAACACATAAAGCGGTTGc > 1:404933/1‑300 (MQ=255)
aCGACAACAACGATAAGCAGTGAGGTCCCACCGTAGTAGAACGGTACTTTCATTGCATCACGCATGAACTCCGGGATCAGGCAGATAAAGGTAATATACAGCGCACCAACCAGGGTCAGGCGGGTCATTACTTTATCGATATACTTCGCCGTTTGCTCTCCCGGACGAATTCCTGGTACAAATGCACCGGACTTCTTCAGGTTATCTGCTGTTTCACGCGGGTTGAAAACCAACGCCGTGTAGAAGAAACAGAAGAAGATGATTGCAGACGCATAGAGTAACACATAAAGCGGTTGCCCAg > 2:611331/1‑301 (MQ=255)
aaGCAGTGAGGTCCCAACGTAGTAGAACGGTACTTTCATTGCATCACGCATGAACTCCGGGGTCAGGCAGATAAAGGTAATATACAGCGCACCAACCAGGGTCAGGCGGGTCAATACTTTATCGATATACTTCGCCGTTTGCTCTCCCGGACGAATTCCTGGTACATATGCACCGGACTTCTTCAGGTTATCTGCTGTTTCACGCGGGTTGAAAACCAACGCCGTGTAGAAGAAACAGAAGAAGATGATTGCAGACGCATAGAGTAACACATAAAGCGGTTGCCCAGGCTGCAAATACAGc < 1:524888/301‑1 (MQ=255)
cAGTGAGGTCCCACCGTAGTAGAACGGTACTTTCATTGCATCACGCATGAACTCCGGGATCAGGCAGATAAAGGTAATATACAGCGCACCAACCAGGGTCAGGCGGGTCATTACTTTATCGATATACTTCGCCGTTTGCTCTCCCGGACGAAATCCTGGTACAAATGCACCGGACTTCTTCAGGTTATCTGCTGTTTCACGCGGGTTGAAAACCAACGCCGTGTAGAAGAAACAGAAGAAGATGATTGCAGACGCATAGAGTAACACATAAAGCGGTTGCCCAGGCTGCAAATACAGCg < 2:404940/299‑1 (MQ=255)
gTGAGGTCCCACCGTAGTAGAACGGTACTTTCATTGCATCACGCATGAACTCCGGGATCAGGCAGATAAAGGTAATATACAGCGCACCAACCAGGGTCAGGCGGGTCATTACTTTATCGATATACTTCGCCGTTTGCTCTCCCGGACGAATTCCTGGTACAAATGCACCGGACTTCTTCAGGTTATCTGCTGTTTCACGCGGGTTGAAAACCAACGCCGTGTAGAAGAAACAGAAGAAGATGATTGCAGACGCATAGAGTAACACATAAAGCGGTTGCCCAGGCTGCAAATACAGCGAAAt > 2:128240/1‑301 (MQ=255)
gAGGTCCCACCGTAGTAGAACGGTACTTTCATTGCATCACGCATGAACTCCGGGATCTGGCAGATAAAGGTAATATACAGCGCACCAACCAGGGTCAGGCGGGTCATTACTTTATCGATATACTTCGCCGTTTGCTCTCCCGGACGAATTCCTGGTACAAATGCACCGGACTTCTTCAGGTTATCTGCTGTTTCACGCGGGTTGAAAACCAACGCCGTGTAGAAGAAACAGAAGAAGATGATTGCAGACGCATAGAGTAACACATAAAGCGGTTGCCCAGGCTGAAAATATAGCGAAAttt > 1:402466/1‑300 (MQ=255)
tCCCACCGTAGTAGAACGGTACTTTCATTGCATCACGCATGAACTCCGGGATCAGGCAGATAAAGGTAATATACAGCGCACCAACCAGGGTCAGGCGGGTCATTACTTTATCGATATACTTCGCCGTTTGCTCTCCCGGACGAATTCCTGGTACAAATGCACCGGACTTCTTCAGGTTATCTGCTGTTTCACGCGGGTTGAAAACCAACGCCGTGTAGAAGAAACAGAAGAAGATGATTGCAGACGCATAGAGTAACACATAAAGCGGTTGCCCAGGCTGCAAATACAGCGAAAttgttg < 1:128239/300‑1 (MQ=255)
cccACCGTAGTAGAACGGTACTTTCATTGCATCACGCATGAACTCCGGGATCAGGCAGATAAAGGTAATATACAGCGCACCAACCAGGGTCAGGCGTGTCATTACTTTATCGATATACTTCGCCGTTTGCTCTCCCGGACGAATTCCTGGTACAAATGCACCGGACTTCTTCAGGTTATCTGCTGTTTCACGCGGGTTGAAAACCAACGCCGTGTAGAAGAAACAGAAGAAGATGATTGCAGACGCATAGAGTAACACATAAAGCGGTTGCCCAGGCTGCAAATACAGCGAAATTGTTGTc < 2:409422/301‑1 (MQ=255)
cccACCGTAGTAGAACGGTACTTTCATTGCATCACGCATGAACTCCGGGATCAGGCAGATAAAGGTAATATACAGCGCACCAACCAGGGTCAGGCGGGTCATTACTTTATCGATATACTTCGCCGTTTGCTCTCCCGGACGAATTCCTGGTACAAATGCACCGGACTTCTTCAGGTTATCTGCTGTTTCACGCGGGTTGAAAACCAACGCCGTGTAGAAGAAACAGAAGAAGATGATTGCAGACGCATAGAGTAACACATAAAGCGGTTGCCCAGGCTGCAAATACAGCGAAATtgttgt > 2:115905/1‑300 (MQ=255)
|
GAAAAATATGCGAAAAAATCAGCCTTGGCGCTGTTTATGCTTCGGCTCGGCACTGCAAATCACACGGATGACACCATCACGCTTAACGATTTTGCAGTTACGGCATAATTTCTTGACGGAAGCACGAACTTTCATTTTTACTCTCCGTAACTTCTCGGGCGACCAATTATCGGCCGTAGCCTTTCAGGTTCGCCTTCTTCAATGCAGACTCATACTGACTGGACATCATCAGAGTTTGCACTTGAGCCATAAAGTCCATAATCACGACAACAACGATAAGCAGTGAGGTCCCACCGAAGTAGAACGGTACTTTCATTGCATCACGCATGAACTCCGGGATCAGGCAGATAAAGGTAATATACAGCGCACCAACCAGGGTCAGGCGGGTCATTACTTTATCGATATACTTCGCCGTTTGCTCTCCCGGACGAATTCCTGGTACAAATGCACCGGACTTCTTCAGGTTATCTGCTGTTTCACGCGGGTTGAAAACCAACGCCGTGTAGAAGAAACAGAAGAAGATGATTGCAGACGCATAGAGTAACACATAAAGCGGTTGCCCAGGCTGCAAATACAGCGAAATTGTTGTC > NC_000913/3442600‑3443189
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
