Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A3 F108 I1 R1
|
11 |
40.8 |
1469306 |
91.3% |
1341476 |
142.5 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| JC |
NC_000913 |
4,049,990 |
Δ12 bp |
noncoding (93‑104/109 nt) |
spf → |
Spot 42 sRNA antisense regulator of galK translation, Hfq‑dependent |
|
| |
seq id |
position |
reads (cov) |
reads (cov) |
score |
skew |
freq |
annotation |
gene |
product |
| * |
? |
NC_000913 |
= 4049989 | 1 (0.020) | 47 (1.170) |
42/282 |
0.0 |
97.9% |
noncoding (92/109 nt) |
spf |
Spot 42 sRNA antisense regulator of galK translation, Hfq‑dependent |
| ? | NC_000913 |
4050002 = |
NA (NA) | noncoding (105/109 nt) |
spf |
Spot 42 sRNA antisense regulator of galK translation, Hfq‑dependent |
AATTACAAAAAGTGCTTTCTGAACTGAACAAAAAAGAGTAAAGTTAGTCGCGTAGGGTACAGAGGTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/4049847‑4049989
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTTTATCAGGCCAACGGTAGAATTGTAATCTATTGAATTTACGGGCCGGATACGCCACATCCGGCACAAGCATTAAGGCAAGAAAATTATTCGCCGTC > NC_000913/4050002‑4050143
AATTACAAAAAGTGCTTTCTGAACTGAACAAAAAAGAGTAAAGTTAGTCGCGTAGGGTACAGAGGTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAAT < 2:248368/143‑1
tacaaatattttTTTCTGAATTTAACAAAAAAGAGTAAAGGTAGTCGCGTAGGGTACAGAGGTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATTTT < 2:502070/131‑1
TACAAAAAGTGCTTTCTGAACTGAACAAAAAAGAGTAAAGTTAGTCGCGTAGGGTACAGAGGTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATTTT < 1:227316/143‑1
AAAAAGTGCTTTCTGAACTGAACAAAAAAGAGTAAAGTTAGTCGCGTAGGGTACAGAGGTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCATTCAGTAATTTTTct > 1:541952/1‑141
AAAAGTGCTTTCTGAACTGAACAAAAAAGAGTAAAGTTAGTCGCGTAGGGTACAGAGGTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATTTTTATT < 1:359036/143‑1
AGTGGTTTCTGAAGCGAACAAAAAAGAGGAAAGGGAGTCGCGGAGGGTACAGAGGTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATTTTTATTGGG < 2:150880/143‑1
CTGAACTGAACAAAAAAGAGTAAAGTTAGTCGCGTAGGGTACAGAGGTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATTTTTATTGGGAGAAAGAA > 2:467310/1‑143
CTGAACTGAACAAAAAAGAGTAAAGTTAGTCGCGTAGGGTACAGAGGTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATATATATAGGGCGAAAAAA > 2:573614/1‑143
gaaccaAACAAGAAAGAGTAAAGTTAGTCGCGTAGGGTACAGAGGTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATTTTTATTGGGCGAAAGAAAA < 2:226017/137‑1
CTGAACAAAAAAGAGTAAAGTTAGTCGCGTAGGGTACAGAGGTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATTTTTATTGGGCGAAAGAAAAGAT > 1:482517/1‑143
TGAACAAAAAAGAGTAAAGTTAGTCGCGTAGGGTACAGAGGTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATTTTTATTGGGCGGATGAACAGATC > 2:673249/1‑143
GAACAAAAAAGAGTTAAGTTAGTCGCGTATTTTATAGAGTTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATTTTTATTGGGCGAAAGAAAAGATCC < 2:272506/143‑1
CAAAAAAGAGTAAAGTTAGTCGCGTAGGGTACAGAGGTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTACTTTTTATTGGGCGAAAGAAAAGATCCGTA > 2:168109/1‑143
CAAAAAAGAGTAAAGTTAGTCGCGTAGGGTACAGAGGTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTATAGAAGCAAAAGTCAGTAATTTTTATTGGGCGAAAGAAAAGATCCGTA > 2:190281/1‑143
AGTAAAGTTAGTCGCGTAGGGTACAGAGGTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATTTTTATTGGGCGAAAGAAAAGATCCGTAAGGCCTGA < 1:472596/143‑1
TAGTCGCGTAGGGTACAGAGGGAAGATGTTCTATCTTTTAGGGCTTGTATTTCACGTGAGCGGATTTGGCTGGGTATTTTGGCGGCCGCAGTCAGTAATTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTAT > 2:705168/1‑143
CGCGTAGGGTACAGAGGTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTTT < 1:460352/143‑1
CGTAGGGTACAGAGGTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATTTTTTTTGTGCGAAAGAAAAGATCCGTAATGCCTGATACGCTATGTTTAT > 2:121868/1‑143
CGTAGGGTACAGAGGTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATATTAGCCGCCCCAGTCAGTAATTTTTACTGGGCGAAAGAAAAGATCCGTAATGCGTGATTCGATATGTTTAT > 1:456488/1‑143
TAGGGTACAGAGGTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTATTTTTTTTTTGTCTTATGAAAAGATCCATAATGCCTGATGCGCTATATTTATaa > 2:55177/1‑141
ttgtTACAGTGGTTATATGTTCTATCCTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTTTATCAG < 2:452976/139‑1
AGAGGTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTTTATCAGGCCAACG > 2:381979/1‑143
aattttTTCTATCTTTCATATCTTGTACTTCACGGAATCGGAATTGGCTGAATAGTTTAGCCGCCCCAGTCAGTAATTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTTTATCAGGCCAACGGTAGAA < 2:563083/137‑1
TCTTTCATACTTTTTTCTTGCCGTATGCGGGTGTGGTTGAATATTTTAGCCGCCCCAGTCAGTAATTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTTTATCAGGCCAACGGTAGAATTGTAATCTAT < 1:722379/143‑1
TCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCTAGTCAGTAATTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGTTATGTTTATCAGAGCAACGGTAGAATTGTAAacgcg > 1:270064/1‑138
TTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGTTGCGCTATGTTTATAAGGACAACGGTAGAATTGTAATCTATTGA > 2:86413/1‑143
ACCTTTTCCTTCTCGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTTTATCAGGCCAACGGTAGAATTGTAATCTATTGAATTTA < 1:409074/143‑1
ACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTTTATCAGGCCGTCGGTCGAATTGTAATCTATTGAATTTA > 2:293679/1‑143
CCTGTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTTTATCAGGCCAACGGTAGAATTGTAATCTATTGAATTTAC < 1:574678/143‑1
CTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGCTGCGCTATGTTTATGAGGCCAACGGTAAAATTGTAATCTATTGAATTTACa > 2:581850/1‑142
CTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTTTATCAGGCCAACGGTAGAATTGTAATCTATTGAATTTACGGGCCGG > 1:559067/1‑143
CACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTTTGTTTATCAGGCCTACGGTAGATTTGTCATTTATAGAAATTACGAGCCGGATA > 2:240678/1‑143
CACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTTTATCAGGCCAACGGTAGAATTGTAATCTATTGAATTTACGGGCCGGATA > 1:396935/1‑143
ACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTTTATCAGGCCAACGGTAGAATTGTAATCTATTGAATTTACGGGCCGGATAC > 2:567099/1‑143
CGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGCTGCGCTATGTTTATCCGGCCAACGGTAGAATTGTAATCTAATGAATTTACGGGCCGGATACG > 2:425100/1‑143
tTAACCGGATTTGTCTGAATATTTTAGCCGTCACAGTCAGTAATTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTTTATCAGGCCAACGGTAGAATTGTAATCTATTGAATTTACGGGCCGGATACGC < 2:643214/142‑1
AATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTTTATCAGGCCAACGGTAGAATTGTAATCTATTGAATTTACCGACCGGATACGACA > 1:364664/1‑143
GGATTTGGCTAAATATGTTAGCCGCCCCATTCAGTAATTTTTATTGTGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTGTATCATGCCAACAGTAGAATTGTAATCTATTGAATTTACGGGCCGGATACGCCACATC < 1:329866/143‑1
TTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTTTATCAGGCCAACGGTAGAATTGTAATCTATTGAATTTACGGGCCGGATACGCCACATCCGG < 2:732089/143‑1
AATATTTTAGCCGCCCCAGTCAGTAATTTTTATTGGACGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTTTATCAGACCAACGGAAGAGTTGTAAACTATGAAATTTACGGGCCGGATACGCGACCACCGGCACAAaga > 1:551963/1‑140
TATTTTAGCCGCCCCAGTCAGTAATTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTTTATCAGGCCAACGGTAGAATTGTAATCTCTTGACTTTACGGGCCGGCTACGCCACATCCGGCACAAGCATT > 2:148787/1‑143
TTTAGCCTCCCCAGTCAGTGATTTTTCTTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTTTATCAGGCCAACGGTAGAATTGTAATCTATTGAATTTACGGGCCGGATACGCCACATCCGGCACAAGCATTAAG < 1:259779/143‑1
CCCCAGTCAGTAATTTTTATTAGGCGAAAGAAAAGATCTGTAATGCCTGATGCGCTATGTTTATCAGGCCAACGGTAGAATTGTAATCTATTGAATTTACGAGCCGGATACGCCACATCAGGCACAAGCATTACGTCAAGAAA > 1:85346/1‑143
CAGTCAGTAATTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTTTATCAGGCCAACGGTAGAATTGTAATCTATTGAATTTACGGGCCGGATACGCCACATCCGGCACCAGCCTTAAGGCAAGAACATT > 2:633051/1‑143
CAGTAATTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTTTATCAGGCCAACGGTAGAATTGTAATCTATTGAATTTACGGGCCGGATACGCCACATCCGGCACAAGCATTAAGGCAAGAAAATTATTC > 1:21116/1‑143
AGTAATTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTTTATCAGGCCAACGGTAGAATTGTACTCTATTGAATTTACGGGCCGGATACGCAAAATCCGGCAAAAGCATTAAGGCAAGAAAATTATTaa > 2:147462/1‑141
AATTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTTTATCAGGCCAACGGTAGAATTGTAATCTATTGAATTTACGGGCCGGATACGCCACATCCGGCACAAGCATTAAGGCAAGAAAATTATTCGCCG > 1:534334/1‑143
ATTTTTATTGGGCGCAAGAAAAGATCCGTAATGCCTGATGCGCTATGTTTATCAGGCCAACGGTAGAATTGTAATCTATTGAATTTACGGGCCGGATACGCCACATCCGGCACAAACATTAAGGCAAGAAAATTATTCGCCGT > 1:458666/1‑143
TTTTTATTGGTAGATAGAAAAGATGCGTAATGCCGGATGCGCTGTGTTTATCAGGCCAACGGTAGAATTGTAATCTATTGAATTTACGGGCCGGATACGCCACATCCGGCACAAGCATTAAGGCAAGAAAATTATTCGCCGTC < 2:79286/143‑1
AATTACAAAAAGTGCTTTCTGAACTGAACAAAAAAGAGTAAAGTTAGTCGCGTAGGGTACAGAGGTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/4049847‑4049989
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTTTATCAGGCCAACGGTAGAATTGTAATCTATTGAATTTACGGGCCGGATACGCCACATCCGGCACAAGCATTAAGGCAAGAAAATTATTCGCCGTC > NC_000913/4050002‑4050143
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
|---|
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |
GATK/CNVnator alignment
N/A
