Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A13 F32 I30 R1 8 41.2 1348942 97.0% 1308473 146.1

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
MC JC CP009273 3,360,110 Δ10,684 bp IS5‑mediated [yhcE]–sspA [yhcE], yhcF, yhcG, yhcH, nanK, nanE, nanT, nanA, nanR, dcuD, sspB, sspA

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ CP009273 3359011–3360109 3370793 10685–11783 14 [13] [0] 41 insH1–sspA insH1, yhcE, yhcF, yhcG, yhcH, nanK, nanE, nanT, nanA, nanR, dcuD, sspB, sspA

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 = 3360109NA (NA)41 (1.000) 33/290 0.3 100% noncoding (1/1195 nt) IS5 repeat region
?CP009273 3370794 = 0 (0.000)intergenic (‑15/+380) sspA/rpsI stringent starvation protein A, phage P1 late gene activator, RNAP‑associated acid‑resistance protein, inactive glutathione S‑transferase homolog/30S ribosomal subunit protein S9

GATK/CNVnator alignment

N/A