Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A15 F18 I40 R1
|
11 |
54.2 |
1757834 |
98.4% |
1729708 |
146.1 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
CP009273 |
3,019,631 |
G→T |
M169I (ATG→ATT) |
guaD → |
guanine deaminase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | CP009273 | 3,019,631 | 0 | G | T | 100.0%
| 167.0
/ NA
| 54 | M169I (ATG→ATT) | guaD | guanine deaminase |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base T (27/27); total (27/27) |
AAATGTCGGCGTTCTTCATCAAGCAGCTTTTACGTAACGGAACCACCACGGCGCTGGTGTTTGGCACTGTTCATCCGCAATCTGTTGATGCGCTGTTTGAAGCCGCCAGTCATATCAATATGCGTATGATTGCCGGTAAGGTGATGATGGACCGCAACGCACCGGATTATCTGCTCGACACTGCCGA‑AAGCAGCTATCACCAAAGCAAAGAACTGATCGAACGCTGGCACAAAAATGGTCGTCTGCTATATGCGATTACGCCACGCTTCGCCCCGACCTCATCTCCTGAAC > CP009273/3019486‑3019776
|
aaaTCTCGGCGTTCCTCAACAAGCAGCTTTTACGTAACGGAACCACCACGGCGCCGGTGTTTGGCACTGTTCATCCGCAATCTGTTGATGCGCTGTTTGAAGCCGCCAGTCATATCAATATGCATATGATTGCCGGTAAGGTGattatg < 1:459455/149‑1 (MQ=255)
tCGGCGTTCTTCATCAAGCAGCTTTTACGTAACGGAACCACCACGGCGCTGGTGTTTGGCACTGTTCATCCGCAATCTGTTGATGCGCTGTTTGAAGCCGCCAGTCATATCAATATGCGTATGATTGCCGGAAAGGTgattat > 2:259281/1‑143 (MQ=255)
ggCGTTCTTCATCAAGCAGCTTTTACGTAACGGAACCACCACGGCGCTGGTGTTTGGCACTGTTCATCCGCAATCTGTTGATGCGCTGTTTGAAGCCGCCAGTCATATCAATATGCGTATGATTGCCGGTAAGGAGATTATGGACCGCa > 1:887310/1‑149 (MQ=255)
ggCGTTCTTCATCAAGCAGCTTTTACGTAACGGAACCACCACGGCGCTGGTGTTCAGCACTGTTCATCCGCAATCTGTTGATGCGCTGTTTGAAGCCGCCAGTCATATCAATATGCGTATGATTGCCGGTAAGGTGATTATGGACCGCa > 1:180053/1‑149 (MQ=255)
cttcATCAAGCAGCTTTTACGTAACGGAACCACCCCGGCGCTGGTGTTTGGCACTGTTCATCCGCAATCTGTTGATGCGCCGTTTGAGGCCGCCATTCATATCAATATGCTGATGATTTGCGGTAAGGGGATTATGGACGGCa > 2:287771/1‑143 (MQ=255)
aaGCAGCTTTTACGTAACGGAACCACCACGGCGCTGGTGTTTGGCACTGTTCATCCGCAATCTGTTGATGCGCGGTTTGAAGCCGCCAGTCATATCAATATGCGTATGATTGCCGGTAAGGTGATTATGGACCGCAACGCAcc > 2:262554/1‑143 (MQ=255)
cagcTTTTACGTCACGGAACCACCACGGCGCTGGTGTTTTGCACTGTTCTTACGCAATCTGTTGATGCGCTGGTTGAAGCCGCCAGTCATATCAATATGCGTATTATTGCCGGTAAGGGGATTATGGACCGCAACGAACCGGa > 2:282084/1‑143 (MQ=255)
cagcTTTTACGTAACGGAACCACCACGGCGCTGGTGTTTGGCACTGTTCATCCGCAATCTGTTGATGCGCTGTTTGAAGCCGCCAGTCGTATCAATATGCGTATGATTGCCGGTAAGGTGATTATGGACCGCAACGCACCGGATTATCt < 1:819200/149‑1 (MQ=255)
cTTTTACGTAACGGAACCACCACGGCGCTGGTGTTTGGCACTGTTCATCCGCAATCTGTTGATGCGCTGTTTGAAGCCGCCAGTCATATCAATATGCGTATGATTGCCGGTAAGGTGATTATGGACCGCAACGCACCGGAttt > 2:50433/1‑142 (MQ=255)
cTTTTACGTAACGGAACCACCACGGCGCTGGTGTTTGGCACTGTTCATCCGCAATCTGTTGATGCGCTGTTTGAAGCCGCCAGTCATATCAATATGCGTATGATTGCCGGTAAGGTGATTATGGACCGCAACGCACCGGATTATCTGCt > 1:417236/1‑149 (MQ=255)
aagTAACGGACCCTCCACGGCGCTGGTGTTTGGCACTGTTCATCCGCAATCTGTTGATGCGTTGTTTGAAGCCGCCAGTCATATCAATATGCGTATGATTGCAGCGAAGGTGATTATGGAGCTCAACGCACCGGATTATCTGc < 2:345167/141‑1 (MQ=255)
cGTAACGGAACCACCACGGCGCTGGTGTTTGGCACTGTTCATCCGCAATCTGTTGATGCGCTGTTTGAAGCCGCCAGTCATATCAATATGCGTATGATTGCCGGTAAGGTGATTATGGACCGCAACGCACCGGATTATCTGCt < 2:4907/143‑1 (MQ=255)
tAACGGAACCACCACGGCGCTGGTGTTTGGCACTGTTCATCCGCAATCTGTTGATGCGCTGTTTGAAGCCGCCAGTCATATCAATATGCGTATGATTGCCGGTAAGGTGATTATTGACCGCAACGCACCGGATTATCTGCTCg > 2:528027/1‑143 (MQ=255)
tAACGGAACCACCACGGCGCTGGTGTTTGGCACTGTTCATCCGCAATCTGTTGATGCGCTGTTTGAAGCCGCCAGTCATATCAATATGCGTACGCTTGCCGGTACGGTGATTATGGACCGCAACGCACCGGATCATCTGCTCg > 2:250505/1‑143 (MQ=255)
aaCGGAACCACCACGGCGCTGTTGTTTGGCAATGTTCATCCGCAATCTGTTGAGGCGTTGTTTGAAGCCGCCAGTTATATCAATATGCGTATGATTGCCGGTAAGGTGATTATGGACCGCAACGCACCGGATTATCTGCTCGa < 2:360241/143‑1 (MQ=255)
aaCGGAACCACCACGGCGCTGGTGTTTGGCACTGTTCATCCGCAATCTGTTGATGCGCTGTTTGAAGCCGCCAGTCATATCAATATGCGTATGATTGCCGGTAAGGTGATTATGGACCGCAACGCACCGGATTATCTGCTCGa < 2:182915/143‑1 (MQ=255)
aCGGAACCACCACGGCGCTGGTGTTTGGCACTGTTCATCCGCAATCTGTTGATGCGCTGTTTGAAGCCGCCAGTCATATCAATATGCGTATGATTGCCGGTAAGGTGATTATGGACCGCAACGCACCGGATTATCTGCTCGACACTGcc < 1:370933/149‑1 (MQ=255)
ccaccaCGGCGCTGGTGTTTGGCACTGTTCATCCGCAATCTGTTGATGCGCTGTTTGAAGCCGCCAGTCATCTCAATATGCGTATGATTGCCGGTAAGGTGATTATGGACCGCAACGCACCGGATTATCTGCCCGACACTGcc < 2:733861/143‑1 (MQ=255)
cgcgcctcTGGTGTTTGTCACGGTTCATCCGCAATCTGTTGATGCGCTGTTTGAAGCCGCCAGTCATATCAACATGCGTCTGATTGCCGGTAAGGGGATTATGGACCGCAACGCACCGGATTATCTGCTCGACACTGCCGa‑aa < 2:428920/136‑1 (MQ=255)
cacGGCGCTGGTGTTTGGCACTGTTCATCCGCAATCTGTTGATGCGCTGTTTGAAGCCGCCAGTCATATCAATATGCGTATGATTGCCGGTAAGGTGATTATGGACCGCCACGCACCGGATGAGCTGCTCGACACTGCCGa‑aa < 2:699770/143‑1 (MQ=255)
gcTGGTGTTTGGCACGTTTCATCCGCAATCTGTTGATGCGCTGTTTGAAGCCGCCAGTCATATCAATATGCGTATGATTGCCGGTAAGGTGATTATGGACCGCAACGCACCGGATTATCTGCTCGACACTGCCGA‑AAGCAGCt < 2:425947/143‑1 (MQ=255)
cTGGTGTTTGGCACTGTTCATCCGCAATCTGTTGATGCGCTGTTTGAAGCCGCCAGTCATATCAATATGCGTATGATTGCCGGTAAGGTGATTATGGACCGCAACGCACCGGATTATCTGCTCGACACTGCCGA‑AAGCAGCTa < 2:612000/143‑1 (MQ=255)
tGGTGTTTGGCACTGTTCATCCGCAATCTGTTGATGCGCTGTTTGAAGCCGCCAGTCATATCAATATGCGTATGATTGCCGGTAAGGTGATTATGGACCGCAACGCACCGGATTATCTGCTCGCCACTGCCGA‑AAGCAGCTAt > 2:252138/1‑143 (MQ=255)
ggTGTTTGGCACGGTTCATCCCCCACCTGTTGATGCTGTGTTCGAAGCCCCCAGTCATATCAAGATGCGTATGATTGCCGGTAAGGTGATTATGGACCGCAACGCACCGGATTATATGCTCGACACTGCCGA‑AAGCAGCTATCACcaaa < 1:816850/149‑1 (MQ=255)
tttGGCACTGTTCATCCGCAATCTGTTGATGCGCTGTTTGAAGCCGCCAGTCATATCAATATGCGTATGATTGCCGGTAAGGTGATTATGGACCGCAACGCACCGGATTATCTGCTCGACACTGCCGA‑AAGCAGCTATCACcaaagcaa > 1:307176/1‑149 (MQ=255)
tttGGCACTGTTCATCCGCAATCTGTTGATGCGCTGTTTGAAGCCGCCAGTCATATCAATATGCGTATGATTGCCGGTAAGGTGATTATGGACCGCAACGCACCGGATTATCTGCTCGACACTGCCGA‑AAGCAGCTATCACca > 2:385724/1‑143 (MQ=255)
ttGGCACTGTTCATCCGCAATCTGTTGATGCGCTGTTTGAAGCCGCCAGTCATATCAATATGCGTATGATTGCCGGTAAGGTGATTATGGACCGCAACGCACCGGATTATCTGCTCGACACTGCCGA‑AAGCAGCTATCACcaa < 2:363149/143‑1 (MQ=255)
tGGAACTGTTTTTCCGCAATCTGTTGATGCGCTGTTTGAAGCCGCCAGTCATATCAATATGCGTATGATTGCCGGTAAGGTGATTATGGACCGCAACGCACCGGTTTATCTGCTCGACACTGCCGA‑AAGCAGCTATCACcaaa < 2:333497/143‑1 (MQ=255)
cTGTTCATCCGCAATCTGTTGATGCGCTGTTTGAAGCCGCCAGTCATATCAATATGCGTATGATTGCCGGTAAGGTGATTATGGACCGACACGCACAGGAGTATCTGCTCGACACTGCCGA‑AAGCAGCTATCACCAAAGCAAAGAACTg < 1:715589/149‑1 (MQ=255)
ttCATCCGCAATCTGTTGATGCGCTGTTTGAAGCCGCCAGTCATATCAATATGCGTATGATTGCCGGTAAGGTGATTATGGACCGCAACGCACCGGATTATCTGCTCGACACTGCCGA‑AAGCAGCTATCACCAAAGCAAAGaa < 2:154418/143‑1 (MQ=255)
tCATCCGCAATCTGTTGATGCGCTGTTTGAAGCCGCCAGTCATATCAATATGCGTATGATTGCCGGTAAGGTGATTATGGACCGCAACGCACCGGATTATCTGCTCGACACTGCCGA‑AAGCAGCTATCACCAAAGCAAAGaaa < 2:112018/143‑2 (MQ=255)
tCTGTTGATGCGCTGTTTGAAGCCGCCAGTCATATCAATATGCGTATGATTGCCGGTAAGGTGATTATGGACCGCAACGCACCGGATTATCTGCTCGACACTGCCGA‑AAGCAGCTATCACCAAAGCAAAGAACTGATCGAACGCTGGca > 1:570775/1‑149 (MQ=255)
tCTGTTGATGCGCTGTTTGAAGCCGCCAGTCATATCAATATGCGTATGATTGCCGGTAAGGTGATTATGGACCGCAACGCACCGGAGTATCTGCTCGACACTGCCGA‑AAGCAGCTATCACCAAAGCAAAGCACTTATCGAACGCTGGca > 1:2867/1‑149 (MQ=255)
gTTGATGCGCTGTTTGAAGACGCCAGTCATATCAATATGCGTATGATTGCCGGTAAGGTGATTATGGACCTCAACGCACCGGATTATCTGCTCGACACTGCCGG‑AAGCAGCTATCCCCAAACCAACGAACTGATCGAACACTg > 2:473239/1‑143 (MQ=255)
ttGATGCGCTGTTTGAAGCCGCCAGTCATATCAATATGCGTATGATTGCCGGTAAGGTGATTATGGACCGCAACGCACCGGATTATCTGCTCGACACTGCCGA‑AAGCAGCTATCACCAAAGCAAAGAACTGATCGAACGCTGGCACaaa > 1:182123/1‑149 (MQ=255)
tattcgcTGAGTGAAGCCTCCAGTCATAGCAATGTGCGTAGGATTGCCGGTAAGGTGATTATGGACCGCAACGCACCGGATTATCTGCTCGACACTGCCGACAAGCA‑CTAACACTTAAGCAAAGAACTGATCGAACGCTGGca > 2:584550/5‑143 (MQ=255)
gATGCGCTGTTTGAAGCCGCCAGTCATATCAATATGCGTATGATTGCCGGTAAGGTGATTATGGACCGCAACGCACCGGATTATCTGCTCGACACTGCCGA‑AAGCAGCTATCACCAAAGACAAGAACTGATCGAACGCTGGCACaaaaa > 1:806550/1‑149 (MQ=255)
tGCGCTGTTTGAAGCCGCCAGTCATATCAATATGCGTATGATTGCCGGTAAGGTGATTATGGACCGCAACGCACCGGATTATCTGCTCGACACTGCCGA‑AAGCAGCTATCACCAAAGCAAAGATCTGATCGAACGCTGGCACAAAAATg < 1:459801/149‑1 (MQ=255)
aaGCCGCCAGTCATATCAATATGCGTATGATTGCCGGTAAGGTGATTATGGACCGCAACACACCTGATTATCTGCTCGACACTGCCGA‑AAGCAGCTATCACCAAAGCAAAGAACTGATCGAACGCTGGCACCAAAATGGTCGGCTGCta > 1:179181/1‑149 (MQ=255)
aGCCGCCAGTCATATCAATATGCGTATGATTGCCGGTAAGGTGATTATGGACCGCAACGCACCGGATTATCTGCTCGACACTGCCGA‑AAGCAGCTATCACCAAAGCAAAGAACTGATCGAACGCTGGCACAAAAATGgtcgtc > 2:427853/1‑143 (MQ=255)
cAGTCATATCAATATGCGTATGATTGCCGGTAAGGTGATTATGGACCGCAACGCACCGGATTATCTGCTCGACACTGCCGA‑AAGCAGCTATCACCAAAGCAAAGAACTGATCGAACGCTGGCACAAAAATGGTCGTCTGCTATATGCGa < 1:227405/149‑1 (MQ=255)
tatCAATATGCGTATGATTGCCGGTAAGGTGATTATGGACCGCAACGCACCGGATTATCTGCTCGACACTGCCGA‑AAGCAGCTATCACCAAAGCAAAGAACTGATCGAACGCTGGCACAAAAATGGTCGTCTGCTATATGCGa > 2:105177/1‑143 (MQ=255)
tatCAATATGCGTATGATTGCCGGTAAGGTGATTATGGACCGCAACGCACCGGATTATCTGCTCGACACTGCCGA‑AAGCAGCTATCACCAAAGCAAAGAACTGATCGAACGCTGGCACAAAAATGGTCGTCTGCTATATGCGATTACGc > 1:538427/1‑149 (MQ=255)
atCAATATGCGTATGATTGCCGGTAAGGTGATTATGGACCGCAACGCACCGGATTATCTGCTCGACACTGCCGA‑AAGCAGCTATCACCAAAGCAAAGAACTGATCGAACGCTGGCACAAAAATGGTCGTCTGCTATATGCGATTACGca > 1:93648/1‑148 (MQ=255)
atCAATAGGCTTATGATTGCCCGTAAGGTGATTATGGACCGCAACGCACCGGATTATCTGCTCGACACTGCCGA‑AAGCAGCTATCACCAAAGCAAAGAACTGATCGAACGCTGGCACAAAAATGGTCGTCTGCTATATGCGATTACGcc < 1:537905/149‑1 (MQ=255)
tCAATATGCGTATGATTGCCGGTAAGGTGATTATGGACCGCAACGCACCGGATTATCTGCTCGACACTGCCGA‑AAGCAGCTATCACCAAAGCAAAGAACTGATCGAACGCTGGCACAAAAATGGTCGTCTACTATATGCGATTACGCCa < 1:71915/149‑1 (MQ=255)
aaTATGCGTATGATTGCCGGTAAGGTGATTATGGACCGCAACGCACCGGATTATCTGCTCGACACTGCCGA‑AAGCAGCTATCACCAAAGCAAAGAACTGATCGAACCCTGGCCCAAAAATGGTCGTCTGCTATATGCGATTACGCCACg > 1:16661/1‑149 (MQ=255)
atatGCGTATGATTGCCGGTAAGGTGATTATGGACCGCAACGCACCGGATTATCTGCTCGACACTGCCGA‑AAGCAGCTATCACCAAAGCAAAGAACTGATCGAACGCTGGCACAAAAATGGTCGTCTGCTATATGCGATTACGCCACGc > 1:664628/1‑149 (MQ=255)
gTATGATTGCCGGTAAGGTGATTATGGACCGCAACGCACCGGATTATCTGCTCGACACTGCCGA‑AAGCAGCTATCACCAAAGCAAAGAACTGATCGAACGCTGGCACAAAAATGGTCGTCTGCTATATGCGATTAAGCCACGCTTCGcc > 1:157658/1‑149 (MQ=255)
gATTGCCGGTAAGGTGATTATGGACCGCAACGCACCGGATTATCTGCTCGACACTGCCGA‑AAGCAGCTATCACCAAAGCAACGAACTGATCGAACGCTGGCACAAACATGGTCGTCTGCTATATGCGATTACGCCACGCTTCGCCCCGa < 1:722602/149‑1 (MQ=255)
gATTGCCGGTAAGGTGATTATGGACCGCAACGCACCGGATTATCTGCTCGACACTGCCGA‑AAGCAGCTATCACCAAAGCAAAGAACTGATCGAACGCTGGCACAAAAATGGTCGTCTGCTATATGCGATTACGCCACGCTTCGCCCCGa < 1:312188/149‑1 (MQ=255)
gctgggacggcgatgatGGCCCCCACGGCACCGGATTATCGGCTCGACACTGCCGA‑AAGCAGCTACCACCAAAGCAAAGACCTGATCGAACGCTGGCACAAAAATGGTCGTCTGCTATATGCGATTACGCCACGCTTCGCCCCGACCTc < 1:57876/138‑1 (MQ=255)
gCCGGTAAGGTGATTATGGACCCCAACGCACCGGATTATCTGCTCGACACTGCCGA‑AAGCAGCTATCACCAAAGCAAAGAACTGATCGAACGCTGGCACAAAAATGGTCGTCTGCTATATGCGATTACGCCACGCTTCGCCCCGACCTc < 1:56326/149‑1 (MQ=255)
cGGTAAGGTGATTATGGACCGCAACGCACCGGATTATCTGCTCGACACTGCCGA‑AAGCAGCTATCACCAAAGCAAAGAACTGATCGAACGCTGGCACAAAAATGGTCGTCTGCTATATGCGATTACGCCACGCTTCGCCCCGACCTCAt > 1:497437/1‑149 (MQ=255)
ggTAAGGTGATTATGGACCGCAACGCACCGGATTATCTGCTCGACACTGCCGA‑AAGCAGCTATCACCAAAGCAAAGAACTGATCGAACGCTGGCACAAAAATGGTCGTCTGCTATATGAGATTACGCCACGCTTCGCCCCGACCTCAtc < 1:478162/149‑1 (MQ=255)
tAAGGTGATTATGGACCGCAACGCACCGGATGATCTGCTCGACACTGCCGA‑AAGCAGCTATCACCAAAGCAAAGAACGGATCGAACGCTGGCACAAAAATGGTCGTCTGCTATATGCGATTACGCCACGCTTCGCCCCGACCTCAtctc < 1:129165/149‑1 (MQ=255)
tAAGGGGATTATGGACCGCACCGCACCGGATTATCTGCTCGACACTGCCGA‑AAGCAGCTATCACCAAAGCAAAGAACTGATCGAACGCTGGCACAAAAATGGTCGTCTGCTATATGCGATTACGCCACGCTTCGCCCCGACCTCAtctc < 1:116105/149‑1 (MQ=255)
tgattaTGGACCGCACCGCACCGGATTATCTGCTCGACACTGCCGA‑AAGCAGCTATCACCAAAGCAAAGAACTGATCGAACGCTGGCACAAAAATGGTCGTCTGCTATATGCGATTACGCCACGCTTCGCCCCGACCTCATCTCCTGaa < 1:618932/149‑1 (MQ=255)
gattatGGACCGCAACGCACCGGATTATCTGCTCGACACTGCCGA‑AAGCAGCTATCACCAAAGCAAAGAACTGATCGAACGCTGGCACAAAAATGGTCGTCTGCTATATGCGATTACGCCACGCTTCGCCCCGACCTCATCTCCTGAAc < 1:432000/149‑1 (MQ=255)
|
AAATGTCGGCGTTCTTCATCAAGCAGCTTTTACGTAACGGAACCACCACGGCGCTGGTGTTTGGCACTGTTCATCCGCAATCTGTTGATGCGCTGTTTGAAGCCGCCAGTCATATCAATATGCGTATGATTGCCGGTAAGGTGATGATGGACCGCAACGCACCGGATTATCTGCTCGACACTGCCGA‑AAGCAGCTATCACCAAAGCAAAGAACTGATCGAACGCTGGCACAAAAATGGTCGTCTGCTATATGCGATTACGCCACGCTTCGCCCCGACCTCATCTCCTGAAC > CP009273/3019486‑3019776
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
