Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A19 F166 I1 R1	27	92.7	1999278	95.2%	1903312	141.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	CP000730	41,171	T→C	intergenic (‑38/‑134)	mecA ← / → mecR1	penicillin binding protein 2 prime/methicillin resistance regulatory protein MecR1

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	CP000730	41,171	0	T	C	100.0%	228.2 / NA	71	intergenic (‑38/‑134)	mecA/mecR1	penicillin binding protein 2 prime/methicillin resistance regulatory protein MecR1
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (40/31); total (40/31)

GTATTATTAATTTCTTTATCTTTTGAAGCATAAAAATATATACCAAACCCGACAACTACAACTATTAAAATAAGTGGAACAATTTTTATCTTTTTCATCAATATACTCCTTATATAAGACTACATTTGTAGTATATTACAAATGTAGTATTTATGTCAAAATAATGTTATAATTTTTGTGATATGGAGGTGTAGAAGGTGTTATCATCTTTTTTAATGTTAAGTATAATCAGTTCATTGCTCACGATATGTGTAATTTTTTTAGTGAGAA  >  CP000730/41036‑41305

gttctattaATTTGTTTATCCTTTGAAGCATAAAAATATATACCAAACTCGACAACTACAACTATTAAAATAAGTGGAACAATTTTTATCTTTTTCATCAATATACTCCTTATATAAGACTACATTTGTAGTATACTACaa                                                                                                                                   <  2:160826/137‑1 (MQ=255)

            tCTTTATCTTTTGAAGCATAAAAATATATACCAAACCCGACAACTACAACTATTAAAATAAGTGGAACAATTTTTATCTTTTTCATCATTATTCTCCTTATATAAGACTACATTTGTAGTATACTACAAATGTAGTATTTa                                                                                                                       >  2:275058/1‑141 (MQ=255)

             cTTTATCTTTTGAAGCATAAAAATAAATACCAAACCCGACAACTACAACTATTAAAATAAGTGGAACAATTTTTATCTTTTTCATCAATATACTCCTTATATAAGACTACATTTGTAGTATACTACAAATGTAGTATTTAt                                                                                                                      >  1:935881/1‑141 (MQ=255)

              tttATCTTTTGAAGCATAAAAATATATACCAAACCCGACAACTACAACTATTAAAATAAGTGGAACAATTTTTATCTTTTTCATCAATATACTCCTTATATAAGACTACATTTGTAGTATACTACAAATGTAGTATTTAtt                                                                                                                     >  2:321614/1‑140 (MQ=255)

              tttATCTTTTGAAGCATAAAAATATATACCAAACCCGACAACTACAACTATTAAAATAAGTGGAACAATTTTTATCTTTTTCATCAATATACTCCTTATATAAGACTACATTTGTAGTATACTACAAATGTAGTATTTATg                                                                                                                     >  1:143911/1‑141 (MQ=255)

              tttATCTTTTGAAGCATAAAAATATATACCAAACCCGACAACTACAACTATTAAAATAAACGGAACAATTTTTATCTTTTTCATCAATATACTCCTTATATACGACTATCTTTGAAGTATACTACAAATGTAGTATTTATg                                                                                                                     >  2:158400/1‑141 (MQ=255)

                 ttCTTTTCAAACATAAACATATATACCAAACCCCACAACTCCAACCGCTAAAATAAGTGGAACAATTTTTATCTTTTTCATCAACATCCTCCTTATATAAGACTACATTTGTAGTATACTACAAATGTAGTATTTATGTCa                                                                                                                  <  2:120531/140‑1 (MQ=255)

                 aTCTTTTGAAGCATAAAAATATATACCAAACCCGACAACTACAACTATTAAAATAAGTGGAACAATTTTTATCTTTTTCATCAATATACTCCTTATATAAGACTACATTTGTAGTATACTACAAATGTAGTATTTATGTCa                                                                                                                  <  1:870065/141‑1 (MQ=255)

                      ttGAAGCATAAAAATATATACCAAACCCGACAACTACAACTATTAAAATAAGTGGAACAATTTTTATCTTTTTCATCAATATACTCCTTATATAAGACTACATTTGTAGTATACTACAAATGTAGTATTTATGTCAAaata                                                                                                             <  1:794170/141‑1 (MQ=255)

                         aaGCATAAAAATATATACCCGCATCACGAACTACAACTATTAAAATAAGTGAAACAATTTTTATCTTTTTCATCAATATACTCCTTATATAAGACTACATTTGTAGTATACTACAAATGTAGTATTTATGTCAAAATAATg                                                                                                          >  2:706020/1‑141 (MQ=255)

                         aaGCATAAAAATATATACCAAACCCGACAACTACAACTATTAAAATAAGTGGAACAATTTTTATCTTTTTCATCAATATACTCCTTATATAAGACTACATTTGTAGTATACTACAAATGTATTATTTATGTCAAAATAATg                                                                                                          >  1:266195/1‑141 (MQ=255)

                         aaGCATAAAAATATATACCAAACCCGACAACTACAACTATTAAAATAAGTGGAACAATTTTTATCTTTTTCATCAATATACTCCTTATATAAGACTACATTTGTAGTATACTACAAATGTAGTATTTATGTCAAAATAATg                                                                                                          >  2:741734/1‑141 (MQ=255)

                         aaGCATAAAAATATATACCAAACCCGACAACTACAACTATTAAAATAAGTGGAACAATTTTTATCTTTTTCATCAATATACTCCTTATATAAGACTACATTTGTAGTATACTACAAATGTAGTATTTATGTCAAAATAATg                                                                                                          >  2:826111/1‑141 (MQ=255)

                         aaGCATAAAAATATATACCAAACCCGACAACTACAACTATTAAAATAAGTGGAACAATTTTTATCTTTTTCATCAATATACTCCTTATATAAGACTACATTTGTAGTATACTACAAATGTAGTATTTATGTCAAAAAAATg                                                                                                          >  1:459477/1‑141 (MQ=255)

                         aaGCATAAAAATATATACCAAACCCGACAACTACAACTATTAAAATAAGTGGAACAATTTTTATCTTTTTCATCAATATACTCCTTATATAAGACTAAATTTGTAGTATACTACAAGTGTAGTATTTATGTCAAAATAATg                                                                                                          >  1:856670/1‑141 (MQ=255)

                          aGCATAAAAATATATACCAAACCCGACAACTACAACTATTAAAATAAGTGGAACAAGTTTTATCTTTTTCATCAATATACTCCTTATATAAGACTACATTTGTAGTATACTACAAATGTAGTATTTCTGTCAAAATAATGt                                                                                                         >  1:933883/1‑141 (MQ=255)

                           gCATAAAGATATATACCAAACCCGACAACTACAACTATTAAAATAAGTGGAACAATTTTTATCTTTTTCATCAATATACTCCTTATATAAGACTACATTTGTAGTATACTACAAATGTAGTATTTATGTCAAAATTATGtt                                                                                                        >  1:302920/1‑141 (MQ=255)

                           gCATAAAAATATATACCAAACCCGACAACTACAACTATTAAAATAAGTGGAACAATTTTTATCTTTTTCATCAATATACTCCTTATATAAGACTACATTTGTAGTATACTACAAATGTAGTATTTATGTCAAAATAATGtt                                                                                                        >  1:824909/1‑141 (MQ=255)

                           acATAAAAATATATACCAAACCCGACAACTACAACTATTAAAATAAGTGGAACAATTTTTATCTTTTTCATCAATATACTCCTTATATAAGACTACATTTGTAGTATACTACAAATGTAGTATTTATGTCAAAATAATGtt                                                                                                        <  1:881853/140‑1 (MQ=255)

                                     atataCCAAACCCGACAACTACAACTATTAAAATAAGTGGAACAATTTTTATCTTTTTCATCAATATACTCCTTATATAAGACTACATTTGTAGTATACTACAAATGTAGTATTTATGTCAAAATAATGTTATAATTTTtg                                                                                              <  2:143911/141‑1 (MQ=255)

                                     atataCCAAACCCGACAACTACAACTATTAAAATAAGTGGAACAATTTTTATCTTTTTCATCAATATACGCCTTATATAAGACTACATTTGCAGTATACTACAAATGTAGTATTTATGGCAAAATAATGTTATAATTTTtg                                                                                              <  1:455430/141‑1 (MQ=255)

                                         aCCAAACCCGACAACTACAACTATTAAAATAAGTGGAACAATTTTTATCTTTTTCATCAATATACTCCTTATATAAGACTACATTTGTAGTATACTACAAATGTAGTATTTATGTCAAAATAATGTTATAATTTTTGTGat                                                                                          >  2:288906/1‑141 (MQ=255)

                                          ccAAACCCGACAACTACAACTATTAAAATAAGTGGAACAATTTTTATCTTTTTCATCAATATACTCCTTATATAAGACTACATTTGTAGTATACTACAAATGTAGTATTTATGTTAAAATAATGTTATAATTTTTGTGata                                                                                         >  1:20529/1‑141 (MQ=255)

                                           cAAACCCGACAACTACAACTATTAAAATAAGTGGAACAATTTTTATCTTTTTCATCAATATACTCCTTATATAAGACTACATTTGTAGTATACTACAAATGTAGTATTTATGTCAAAATAATGTTATAATTTTTGTGatag                                                                                        >  1:244269/1‑140 (MQ=255)

                                               cccGACAACTACAACTATTAAAATAAGTGGAACAATTTTTATCTTTTTCATCAATATACTCCTTATATAAGACTACATTTGTAGTATACTACAAATGTAGTATTTATGTCAAAATAATGTTATAATTTTTGTGATATGGAg                                                                                    >  1:199788/1‑141 (MQ=255)

                                               cccGACAACTACAACTATTAAAATAAGTGGAACAATTTTTATCTTTTTCATCAATATACTACTTATATAAGACTACATTTGTAGTATACTACAAATGTAGTATTTATGTCAAAATAATGTTATAATTTTTGTGATATGGAg                                                                                    >  1:135921/1‑141 (MQ=255)

                                                ccGACAACTACAACTATTAAAATAAGTGGAACAATTTTTATCTTTTTCATCAATATACTCCTTATATAAGACTACATTTGTAGTATACTACAAATGTAGTATTTATGTCAAAATAATGTTATAATTTTTGTGATATGGAgg                                                                                   <  1:695920/141‑1 (MQ=255)

                                                ccGACAACTACAACTATTAAAATAAGTGGAACAATTTTTATCTTTTTCATCAATATACTCCTTATATAAGACTACATTTGTAGTATACTACAAATGTAGTATTTATGTCAAAATAATGTTATAATTTTTGTGATATGGAgg                                                                                   <  2:19798/141‑1 (MQ=255)

                                                 cGACAACTACAACTATTAAAATAAGTGGAACAATTTTTATCTTTTTCATCAATATACTCCTTATATAAGACTACATTTGTAGTATACTACAAATGTAGTATTTATGTCAAAATAATGTTATAATTTTTGTGATATGGAGgt                                                                                  >  2:730300/1‑141 (MQ=255)

                                                 cGAAAACTACAACAATTAAAATAAGTGGAACAATTTTTATCTTTTTCATCAATATACTCCTTATATAAGACTACATTTGTAGTATACTACAAATGTAGTATTTATGTCAAAATAATGTTATAATTTTTGTGATATGGAGgt                                                                                  <  1:158400/141‑1 (MQ=255)

                                                  gACAACTACAACTATTAAAATAAGTGGAACAATTTTTATCTTTTTCATCAATATACTCCTTATATAAGACTACATTTGTAGTATACTACAAATGTAGTATTTATGTCAATATAATGTTATAATTTTTGTGATATGGAGgtg                                                                                 >  1:4005/1‑141 (MQ=255)

                                                   acaactacaactATTAAAATAATTGGAACAAATTTTATCTTTTTCATCAATATACTCCTTATATAAGACTACATTTGTAGTATACTACAAATGTAGTATTTATGTCAAAATAATGTTATAATTTTTGTGATATGGAGgtgt                                                                                <  1:19736/141‑1 (MQ=255)

                                                   acaactacaacgAATAAACTAAGTGGAACAATTTTTATCTTTTTCATCAATATACTCCTTATATAAGACTACATTTGTAGTATACTACAAATGTAGTATTTATGTCAAAATAATGTTATAATTTTTGTGATATGGAGgtgt                                                                                <  1:224395/141‑1 (MQ=255)

                                                    aaattcaaactaTTAAAATAAGTGGAACAATTTTTATCTTTTTCATCAATATACTCCTTATATAAGACTACATTTGTAGTATACTACAAATGTAGTATTTATGTCAAAATAATGTTATAATTTTTGTGATATGGAGGTGTa                                                                               <  1:304255/134‑1 (MQ=255)

                                                     aactacaactaTTAAAATAAGTGGAACAATTTTTATCTTTTTCATCAATATACTCCTTATATAAGACTACATTTGTAGTATACTACAAATGTAGTATTTATGTCAAAATAATGTTATAATTTTTGTGATATGGAGGTGTAg                                                                              <  2:180333/141‑1 (MQ=255)

                                                     aactacaactaTTAAAATAAGTGGAACAATTTTTATCTTTTTCATCAATATACTCCTTATATAAGACTACATTTGTAGTATACTACAAATGTAGTATTTATGTCAAAATAATGTTATAATTTTTGTGATATGGAGGTGTAg                                                                              <  2:146034/141‑1 (MQ=255)

                                                      actacaactaTTAAAATAAGTGGAACAATTTTTATCTTTTTCATCAATATACTCCTTATATAAGACTACATTTGTAGTATACTACAAATGTAGTATTTATGTCAAAATAATGTTATTATTTTTGTGATATGGAGGTGTTGa                                                                             >  2:975910/1‑141 (MQ=255)

                                                      actacaactaTTAAAATAAGTGGAACAATTTTTATCTTTTTCATCAATATACTCCTTATATAAGACTACATTTGTAGTATACTACAAATGTAGTATTTATGTCAAAATAATGTTATAATTTTTGTGATATGGAGGTGTAGa                                                                             >  2:72841/1‑141 (MQ=255)

                                                      actacaactaTTAAAATAAGTGGAACAATTTTTATCTTTTTCATCAATATACTCCTTATATAAGACTACATTTGTAGTATACTACAAATGTAGTATTTATGTCAAAATAATGTTATAATTTTTGTGATATGGAGGTGTAGa                                                                             >  2:197383/1‑141 (MQ=255)

                                                      actacaactaTTAAAATAAGTGGAACAATTTTTATCTTTTTCATCAATATACTCCTTATATAAGACTACATTTGTAGTATACTACAAATGTAGTATTTATGTCAAAATAATGTTATAATTTTTGTGATATGGAGGTGTAGa                                                                             <  2:826697/141‑1 (MQ=255)

                                                      actacaactaTTAAAATAAGTGGAACAATTTTTATCTTTTTCATCAATATACTCCTTATATAAGACTACATTTGTAGTATACTACAAATGTAGTATTTATGTCAAAATAATGTTATAATTTTTGTGATATGGAGGTGTAGa                                                                             >  2:49437/1‑141 (MQ=255)

                                                          catctaTTAAAATAAGTGGAACAATTTTTATCTTTTTCATCAATATACTCCTTATATAAGACTACATTTGTAGTATACTACAAATGTAGTATTTATGTCAAAATAATGTTATAATTTTTGTGATATGGAGGTGTAGAAGgt                                                                         <  2:760994/138‑1 (MQ=255)

                                                          caactaTTAAAATAAGTGGAACAATTTTTATCTTTTTCATCAATATACTCCTTATATAAGACTACATTTGTAGTATACTACAAATGTAGTATTTATGTCAAAATAATGTTATAATTTTTGTGATATGGAGGTGTAGAAGgt                                                                         <  2:562042/141‑1 (MQ=255)

                                                                  aaaaTAAGTTGAACAATTTTTATATTTTTCATCGATATACTCCATATATAAGACTACATTGGTAGTATACTACAAATGTAGTATTTATGTCAAAATAATGTTATAATTTTTGTGATATGGAGGTGTAGAAGGTGTTatcat                                                                 <  1:259044/141‑1 (MQ=255)

                                                                  aaaaTAAGTGGAACAATTGTTATCTTTTTCATAAATCTGCTCCTTATATAAGACGACATTTGTAGTATACTACAAATGTAGTATTTATGTCAAAATAATGTTTTAATTTTTGTGATATGGAGGTCTAGAAGGTGTTatcat                                                                 <  1:555741/141‑1 (MQ=255)

                                                                     aTAAGTGGAACCATTTTTATCTTTTTCATCAATATACTCCTTATATAAGACTACATTTGTAGTATACTACAAATGTAGTATTTATGTCAAAATAATGTTATAATTTTTGTGATATGGAGGTGTAGAAGGTGTTATCATCtt                                                              <  1:283855/141‑1 (MQ=255)

                                                                        aGTGGAACAATTTTTATCTTTTTCATCAATATACTCCTTATATAAGACTACATTTGTAGTATACTACAAATGTAGTATTTATGTCAAAATAATGTTATAATTTTTGTGATATGGAGGTGTAGAAGGTGTTATCATCttttt                                                           <  2:975449/141‑1 (MQ=255)

                                                                                  tttttATCTTTTTCATCAATATACTCCTTATATAAGACTACATTTGTAGTATACTACAAATGTAGTATTTATGTCAAAATAATGTTATAATTTTTGTGATATGGAGGTGTAGAAGGTGTTATCATCTTTTTTAATGTTAAg                                                 >  1:167110/1‑141 (MQ=255)

                                                                                  tttttATCTTTTTCATCAATAGACTCCTTATATAAGACTACATTTGTAGTATACTACAAATGTAGTATTTATGTCAAAATAATGTTATAATTTTTGTGATATGGAGGTGTAGAAGGTGTTATCATCTTTTTTAATGTTAAg                                                 >  1:510022/1‑141 (MQ=255)

                                                                                   ttttATCTTTTTCATCAATATATTCCTTATATTAGACTACATTTGTAGTATACTACAAATGTAGTATTTATGTCAAAATAATGTTATAATTTTTGTGATATGGAGGTGTAGAAGGTGTTATCATCTTTTTTAATGTTAAGt                                                <  1:17724/141‑1 (MQ=255)

                                                                                   ttttATCTTTTTCATCAATATACTCCTTATATAAGACTACATTTGTAGTATACTACAAATGTAGTATTTATGTCAAAATAATGTTATAATTTTTGTGATATGGAGGTGTAGAAGGTGTTATCATCTTTTTTAATGTTAAGt                                                >  1:349742/1‑141 (MQ=255)

                                                                                   ttttATCTTTTTCATCAATATACTCCTTATATAAGACTACATTTGTAGTATACTACAAATGTAGTATTTATGTCAAAATAATGTTATAATTTTTGTGATATGGAGGTGTAGAAGGAGTTATCATCTTTTTTAATGTTAAGt                                                >  1:128460/1‑141 (MQ=255)

                                                                                         cTTTTTCATCAATATACTCCTTATATAAGACTACATTTGTAGTATACTACAAATGTAGTATTTATGTCAAAATAATGTTATAATTTTTGTGATATGGAGGTGTAGAAGGTGTTATCATCTTTTTTAATGTTAAGTATAATc                                          >  1:698704/1‑141 (MQ=255)

                                                                                           ttttCATCAATATACTCCTTATATAAGACTACATTTGTAGTATACTACAAATGTAGTATTTATGTCAAAATAATGTTATAATTTTTGTGATATGGAGGTGTAGAAGGTGTTATCATCTTTTTTAATGTTAAGTATAATCAg                                        >  2:775560/1‑141 (MQ=255)

                                                                                                       taCTCCTTATATAAGACTACATTTGTAGTATACTACAAATGTAGTATTTATGTCAAAATAATGTTATAATTTTTGTGATATGGGGGTGTAGAAGGTGTTATCATCTTTTTTAATGTTAAGTATAATCAGTTCATTGCTCAc                            <  1:955340/141‑1 (MQ=255)

                                                                                                       taCTCCTTATATAAGACTACATTTGTAGTATACTACAAATGTAGTATTTATGTCAAAATAATGTTATAATTTTTGTGATATGGAGGTGTAGAAGGTGTTATCATCTTTTTTAATGTTAAGTATAATCAGTTCATTGCTCAc                            <  1:994494/141‑1 (MQ=255)

                                                                                                           ccTTATATAAGCCTACATTTGTAGTATACTACAAATGTAGTATTTGTGTCAAAATACTGGTATAATTTTTGTGATATGGCAGTGTAGAAGGTGTTATCATCTTTTTTAATATTAAGTATAATCAGTTCATTGcaccacata                        >  2:433694/1‑133 (MQ=255)

                                                                                                           ccTTATATAAGACTACATGTTTAGTATACTACAAATGTAGTATTTATGTCAAAATAATGTTATAATTTTTGTGATATGGAGGTGTAGAAGGTGTTATCATCTTTTTTAATGTTAAGTATAATCGGTTCATTGCTGACGata                        >  2:752090/1‑141 (MQ=255)

                                                                                                               tgtataGACTACATTTGTAGTATACTACAAATGTAGTATTTATGTCAAAATAATGTTATAATTTTTGTGATATGGAGGTGTAGAAGGTGTTATCATCTTTTTTTATGTTAAGTATAATCAGTTCATTGCTCACGATAtgtg                    <  2:652346/136‑1 (MQ=255)

                                                                                                               aaataAGACTACATTTGTAGTATACTAAAAATGTAGTATTTATGTCAAAATAATGTTATAATTTTTGTGATATGGAGGTGTAGAAGGTGTTATCATCTTTTTTAATGTTAAGTATAATCAGTTCATTGCTCACGATAtgtg                    <  2:20529/139‑1 (MQ=255)

                                                                                                                 ataAGACTACATTTGTAGTATACTACAAATGTAGTATTTATGTCAAAATAATGTTATAATTTTTGTGATATGGAGGTGTAGAAGGTGTTATCATCTTTTTTAATGTTAAGTATAATCAGTTCATTGTTCACGATATGTGTa                  >  1:497179/1‑141 (MQ=255)

                                                                                                                 ataAGACTACATTTGTAGTATACTACAAATGTAGTATTTATGTCAAAATAATGTTATAATTTTTGTGATATGGAGGTGTAGAAGGTGTTATCATCTTTTTTAATGTTAAGTATAATCAGTTCATTGCTCACGATATGTGTa                  >  1:784930/1‑141 (MQ=255)

                                                                                                                 ataAGACTACATTTGTAGTATACTACAAATGTAGTATTTATGTCAAAATAATGTTATAATTTTTGTGATATGGAGGTGTAGAAGGTGTTATCATCTTTTTTAATGTTAAGTATAATCAGTTAATTGCTCACGatacagata                  >  1:529299/1‑135 (MQ=255)

                                                                                                                   aaGACTACATTTGTAGTATACTACAAATGTAGTATTTATGTCAAAATAATGTTATAATTTTTGTGATATGGAGGTGTAGAAGGTGTTATCATCTTTTTTAATGTTAAGTATAATCAGTTCATTGCTCACGATATGTGTAAt                <  1:706905/141‑1 (MQ=255)

                                                                                                                     gACTACATTTGTAGTATACTACAAATGTAGTATTTATGTCAAAATAATGTTATAATTTTTGTGATATGGAGGTGTAGAAGGTGTTATCATCTTTTTTAATGTTAAGTATAATCAGTTCATTGCTCACGATATGTGTAAttt              >  2:19542/1‑141 (MQ=255)

                                                                                                                     gACTACATTTGTAGAATACCACAAATGTAGTATTTATGTCAAAATAATGTTATAATTTTTGTGATATGGAGGTGTAGAAGGTGTTATCATCTTTTTTAATGTTAAGTATAATCAGTTCATTTCTCACGATAAGTGTAAttt              >  1:547827/1‑141 (MQ=255)

                                                                                                                          cATTTGTAGTATACTACAAATGGAGTATTTATGTCAAAATAATGTTATAATTTTTGTGATATGGAGGTGTAGAAGGTGTTATCATCTTTTTTAATGTTAAGTATAATCAGTTCATTGCTCACGATATGTGTAATTTTTTTa         <  1:452202/141‑1 (MQ=255)

                                                                                                                                tagtaTACTACAAATGTAGTATTTATGTCAAAATAATGTTATAATTTTTGTGATATGGAGGTGTAGAAGGTGTTATCATCTTTTTTAATGTTAAGTATAATCAGTTCATTGCTCACGATATGTGTAATTTTTTTAGTgaga   <  2:167110/141‑1 (MQ=255)

                                                                                                                                tagtaTACTACAAATGTAGTATTTATGTCAAAATAATGTTATAACTTTTGTGATATGGAGGTGTAGAAGGTGTTATCATCTTTTTTAATGTTAAGTATAATCAGTTCATTGCTCACGATATGTGTAATTTTTTTAGTgaga   <  2:510022/141‑1 (MQ=255)

                                                                                                                                 agtaTACTACAAATGTAGTATTTATGTCAAAATAATGTTATAATTTTTGTGATATGGAGGTGTAGAAGGTGTTATCATCTTTTTTAATGTTAAGTATAATCAGTTCATTGCTCACGATATGTGTAATTTTTTTAGTGAGaa  >  1:962411/1‑141 (MQ=255)

                                                                                                                                 agtaTACTACAAATGTAGTATTTATGTCAAAATAATGTTATAATTTTTGTGATATGGAGGTGTAGAAGGTGTTATCATCTTTTTTAAGGTTAAGGATAATCCGTTCATTACTCACGATATGTGTAGTTTTTTTAGTAAGaa  >  1:226486/1‑141 (MQ=255)

GTATTATTAATTTCTTTATCTTTTGAAGCATAAAAATATATACCAAACCCGACAACTACAACTATTAAAATAAGTGGAACAATTTTTATCTTTTTCATCAATATACTCCTTATATAAGACTACATTTGTAGTATATTACAAATGTAGTATTTATGTCAAAATAATGTTATAATTTTTGTGATATGGAGGTGTAGAAGGTGTTATCATCTTTTTTAATGTTAAGTATAATCAGTTCATTGCTCACGATATGTGTAATTTTTTTAGTGAGAA  >  CP000730/41036‑41305

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 13 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A