Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A19 F166 I0 R1	49	63.8	1389156	94.9%	1318309	140.9

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
RA	CP000730	39,672	C→A	100%	V488F (GTT→TTT)	mecA ←	penicillin binding protein 2 prime

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	CP000730	39,672	0	C	A	100.0%	252.1 / NA	80	V488F (GTT→TTT)	mecA	penicillin binding protein 2 prime
Reads supporting (aligned to +/- strand): ref base C (0/0); new base A (35/45); total (35/45)
Rejected as polymorphism: Frequency below/above cutoff threshold.
Rejected as polymorphism: Variant not supported by required number of reads on each strand.

TTGAAAGGATCTGTACTGGGTTAATCAGTATTTCACCTTGTCCGTAACCTGAATCAGCTAATAATATTTCATTATCTAAATTTTTGTTTGAAATTTGAGCATTATAAAATGGATAATCACTTGGTATATCTTCACCAACACCTAGTTTTTTCATGCCTTTTTCAAATTTCTTACTGCCTAATTCGAGTGCTACTCTAGCAAAGAAAATGTTATCTGATGATTCTATTGCTTGTTTTAAGTCGATATTACCATTTACCACTTCATATCTTGT  >  CP000730/39534‑39804

ttGAAAGGATCTGTACTGGGTTAATCAGTATTTCACCTTGTCCGTAACCTGAATCAGCTAATAATATTTCATTATCTAAATTTTTGTTTGAAATTTGAGCATTATAAAATGGATAATCACTTGGTATATCTTCACAAaaac                                                                                                                                    >  2:303294/1‑141 (MQ=255)

          ttGTACTGGGTTAATCAGTATTTCACCTTGTCCGTAACCTGAATCAGCTAATAATATTTCATTATCTAAATTTTTGTTTGAAATTTGAGCATTATAAAATGGATAATCACTTGGTATATCTTCACCAAAACCTAGtttttt                                                                                                                          <  1:238479/140‑1 (MQ=255)

          cTGTACTGGGTTAATCAGTATTTCACCTTGTCCGTAACCTGAATCAGCTAATAATATTTCATTATCTAAATTTTTGTTTGAAATTTGAGCATTATAAAATGGATAATCACTTGGTATATCTTCACCAAAACCTAGtttttt                                                                                                                          >  2:162156/1‑141 (MQ=255)

           tGTACTGGGTTAATCAGTATTTCACCTTGTCCGTAACCTGAATCAGCTAATAATATTTCGTTATCTAAATTTTTGTTTGAAATTTGAGCATTATAAAATGGATAATAGCTTGGTATATCTTCACCAAAACCTAGTTTTTTc                                                                                                                         >  2:387398/1‑141 (MQ=255)

            gTACTGGGTTAATCAGTATTTCACCTTGTCCGTAACCTGAATCGGCTAATAATATTTCATTATCTAAATTTTTGTTTGAAATTTGAGCATTATAAAATGGATAATCACTTGGTATATCTTCACCAAAACCTCGTTTTTTCa                                                                                                                        >  1:124113/1‑141 (MQ=255)

            gTACTGGGTTAATCAGTATTTCACCTTGTCCGTAACCTGAATCAGCTAATAATATTTCATTATCTAAATTTTTGTTTGAAATTTGAGCATTATAAAATGGATAATCACTTGGTATATCTTCACCAAAACCTAGCTTTTTCa                                                                                                                        >  2:592980/1‑141 (MQ=255)

             tACTGGGTTAATCAGTATTTCACCTTGTCCGTAACCTGAATCAGCTAATAATATTTCATTATCTAAATTTTTGTTTGAAATTTGAGCATTATAAAATGGATAATCACTTGGTATATCTTCACCAAAACCTAGTTTTTTCAt                                                                                                                       <  1:681514/141‑1 (MQ=255)

             tACTGGGTTAATCAGTATTTCACCTTGTCCGTAACCTGAATCAGCTAATAATATTTAATTATCTAAATTTTTGTTTGAAATTTGAGCATTATAAAATGGATAATCACTTGGTATATCTTCACCACAACCGAGCTTTTTCAt                                                                                                                       >  1:162850/1‑141 (MQ=255)

               cTGGGTTAATCAGTATTTCACCTTGTCCGTAACCTGAATCAGCTAATAATATTTCATTATCTAAATTTTTGTTTGAAATTTGAGCATTATAAAATGGATAATCACTTGGTATATCTTCACCAAAACCTAGTTTTTTCATGc                                                                                                                     <  1:160163/141‑1 (MQ=255)

                    ttAATCAGTATTTCACCTTGTCCGTAACCTGAATCAGCTAATAATATTTCATTATCTAAATTTTTGTTTGAAATTTGAGCATTATAAAATGGATAATCACTTGGTATATCTTCACCAAAACCTAGTTTTTTCATGCCtttt                                                                                                                <  2:643206/141‑1 (MQ=255)

                      aaTCAGTATTTCACCTTGTCCGTAACCTGAATCAGCTAATAATATTTCATTATCTAAATTTTTGTTTGAAATTTGAGCATTATAAAATGGATAATCACTTGGTATATCTTCACCAAAACCTAGTTTTTTCATGCCTTTTTc                                                                                                              >  1:372511/1‑141 (MQ=255)

                      aaTCAGTATTTCACCTTGTCCGTAACCTGAATCAGCTAATAATATTTCATTATCTAAATTTTTGTTTGAAATTTGAGCATTATAAAATGGATAATCACTTGGTATATCTTCACCAAAACCTAGTTTTTTCATGCCTTTTTc                                                                                                              <  1:63126/141‑1 (MQ=255)

                       aTCAGTATTTCACCTTGTCCGTAACCTGAATCAGCTAATAATATTTCATTATCTAAATTTTTGTTTGAAATTTGAGCATTATAAAATGGATAATCACTTGGTATATCTTCACCAAAACCTAGTTTTTTCATGCCTTTTTCa                                                                                                             <  2:605796/141‑1 (MQ=255)

                       aTCAGGATTTCACCTGTTTCGTAACCTGAATCAGCTAATAATATTTCATTATCTAAATTTTTGTTTGAAATTTGAGCATTATAAAATGGATAATCACTTGGTATATCTTCACCAAAACCTAGTTTTTTCATGCCTTTTTCa                                                                                                             <  1:211680/141‑1 (MQ=255)

                           ttATTTCACCTTGTCCGTAACCTGAATCAGCTAATAATATTTCATTATCTAAATTTTTGTTTGAAATTTGAGCATTATAAAATGGATAATCACTTGGTATATCTTCACCAAAACCTAGTTTTTTCATGCCTTTTTCAAAtt                                                                                                         <  2:97928/140‑1 (MQ=255)

                           gTATGTCACCTTGACCGTAACCTGAATCAGCTAATAATATTTCATTATCTAAATTTTTGTTTGAAATTTGAGCATTATAAAATGGATAATCACTTGGTATATCTTCACCAAAACTTAGTTTTTTCATGCCTTTTTCAAAtt                                                                                                         <  1:674405/141‑1 (MQ=255)

                            tATTTCACCTTGTCCGTAACCTGAATCAGCTAATAATATTTCATTATCTAAATTTTTGTTTGAAATTTGAGCATTATAAAATGGATAATCACTTGGTATATCTTCACCAAAACCTAGTTTTTTCATGCCTTTTTCAAAttt                                                                                                        <  2:122689/141‑1 (MQ=255)

                                 cACCTTGTCCGTAACCTAAATCAGCTAATAATATTTCATTATCTAAATTTTTGTTTGAAATTTGAGCATTATAAAATGGATAATCACTTGGTATATCTTCACCAAAACCTAGTTTTTTCATGCCTTTTTCAAATTTCTTAc                                                                                                   <  1:597174/141‑1 (MQ=255)

                                  aCCTTGTCCGTAACCTGAATCAGCTAATAATATTTCATTATCTAAATTTTTGTTTGAAATTTGAGCATTATAAAATGGATAATCACTTGGTATATCTTCACCAAAACCTAGTTTTTTCATGCCttttttttttttttttct                                                                                                  >  2:53771/1‑128 (MQ=255)

                                  aCCTTGTCCGTAACCTGAATCAGCTAATAATATTTCATTATCTAAATTTTTGTTTGAAATTTGAGCATTATAAAATGGATAATCACTTGGTATATCTTCACCAAAACCTAGTTTTTTCATGCCTTTTTCAAATTTCTTACt                                                                                                  >  2:448569/1‑141 (MQ=255)

                                  aCCTTGTCCGTAACCTGAATCAGCAAATAATATTTCATTATCTAAATTTTTGTTTGAAATTTGAGCATTATAAAATGGATAATCACTTGGTATATCTTCACCAAAACCTAGTTTTTTCATGCCTTTTTCAAATTTCTTACt                                                                                                  >  1:444721/1‑141 (MQ=255)

                                    cTTGTCCGTAACCTGAATCAGCTAATAATATTTCATTATCTAAATTTTTGTTTGAAATTTGAGCATTATAAAATGGATAATCACTTGGTATATCTTCACCAAAACCTAGTTTTTTCATGCCTTTTTCAAATTTCTTACTGc                                                                                                >  2:6165/1‑141 (MQ=255)

                                          cGTAACCTGAATCAGCTAATAATATTTCATTATCTAAATTTTTGTTTGAAATTTGAGCATTATAAAATGGATAATCACTTGGTATATCTTCACCAAAACCTAGTTTTTTCATGCCTTTTTCAAATTTCTTACTCCCTAAtt                                                                                          >  2:660820/1‑141 (MQ=255)

                                             aaCCTGAATCAGCTAATAATATTTCATTATCTAAATTTTTGTTTGAAATTTGAGCATTATAAAATGGATAATCACTTGGTATATCTTCACCAAAACCTAGTTTTTTCATGCCTTTTTCAAATTTCTTACTGCCTAATTCGa                                                                                       <  2:51301/141‑1 (MQ=255)

                                             aaCCTGAATCAGCTAATAATATTTCATTATCTAAATTTTTGTTTGAAATTTGAGCATTATAAAATGGATAATCACTTGGTATATCTTCACCAAAACCTAGTTTTTTCATGCCTTTTTCAAATTTCTTACTGCCTAATTCGa                                                                                       <  1:167426/141‑1 (MQ=255)

                                                cTGAATCAGTTAATAATATTTCATTATCTAAATTTTTGTTTGAAATTTGAGCATTACAAAATGTAGAATCACTTGGTATATCTTCACCAAAAGCTAGTTTTTTCATGCCTTTTTCAAATTTCTTACTGCCTAATTCGAGTg                                                                                    <  1:313632/141‑1 (MQ=255)

                                                cTGAATCAGCTAATAATATTTCATTATCTACATTTTTGTTTGAAATTTGAGCATTATAAAATGGATAATCACTTGGTATCTCTTCACCAAAACCTCGTTTTTTCATGCCTTTTTCAAATTTCTTACTGCCCAATTCGAGTg                                                                                    >  2:524668/1‑141 (MQ=255)

                                                cTGAATCAGCTAATAATATTTCATTATCTAAATTTTTGTTTGAAATTTGAGCATTATAAAGTGGATAATCACTTGGTATATCTTCACCAAAACCTAGTTTTTTCATGCCTTTTTCAAATCTCTTACTGCCTAATTCGAGTg                                                                                    <  1:359882/141‑1 (MQ=255)

                                                cTGAATCAGCTAATAATATTTCATTATCTAAATTTTTGTTTGAAATTTGAGCATTATAAAATGGATAATCACTTGGTATATCTTCACCAAAACCTAGTTTTTTCATGCCTTTTTCAATTTTCTTACTGCCTAATTCGAGTg                                                                                    >  1:632794/1‑141 (MQ=255)

                                                cTGAATCAGCTAATAATATTTCATTATCTAAATTTTTGTTTGAAATTTGAGCATTATAAAATGGATAATCACTTGGTATATCTTCACCAAAACCTAGTTTTTTCATGCCTTTTTCAAATTTCTTACTGCCTGATTCGAGTg                                                                                    >  2:482117/1‑141 (MQ=255)

                                                cTGAATCAGCTAATAATATTTCATTATCTAAATTTTTGTTTGAAATTTGAGCATTATAAAATGGATAATCACTTGGTATATCTTCACCAAAACCTAGTTTTTTCATGCCTTTTTCAAATTTCTTACTGCCTAATTCGAGTg                                                                                    <  2:641531/141‑1 (MQ=255)

                                                 tGAATCAGCTAATAATATTTCATTATCTAAATTTTTGTTTGAAATTTGAGCATTATAAAATGGATAATCACTTGGTATATCTTCACCAAAACCTAGTTTTTTCATGCCTTTTTCAAATTTCTTACTGCCTAATTCGAGTGc                                                                                   <  1:135313/141‑1 (MQ=255)

                                                    aTCAGCTAATAATATTTCATTATCTAAATTTTTGTTTGAAATTTGAGCATTATAAAATGGATAATCACTTGGTATATCTTCACCAAAACCTAGTTTTTTCATGCCTTTTTCAAATTTCTTACTGCCTAATTCGAGTGCTAc                                                                                <  2:450240/141‑1 (MQ=255)

                                                    aTCAGCTAATAATATTGCATTATCTAAATTTTTGGTTGAAATTTGAGCATTATAAAATGGATAATCACTTGGTATATCTTCACCAAAACCTAGTTTTTTCATGCCTTTTTCAAATTTCTTACTGCCTAATTCGAGTGCTAc                                                                                <  1:15728/141‑1 (MQ=255)

                                                         ctactaATATTTCATTACAAATATTTGATTGTGATATCTGAGCATTATAAAATGGATTATCACTTGGTATATCTTCACCAAAACCTAGTTTTTTCATGCCTTTTTCAAATTTCTTACTGCCTAATTCGAGTGCTACTCTAg                                                                           <  2:345139/141‑1 (MQ=255)

                                                         cTAATAATATTTCATTATCTAAATTTTTGTTTGAAATTTGAGCATTATAAAATGGATAATCACTTGGTATATCTTCACCAAAACCTAGTTTTTTCATGCCTTTTTCAAATTTCTTACTGCCTAATTCGAGTGCTACTCTAg                                                                           <  1:234467/141‑1 (MQ=255)

                                                          taataaTATTTCATTATTTAAATTTTTGTTTGAAATTTGAGCATTATAAAATGGATAATCACTTGGTATATCTTCCCCAAAACCTAGCTTTTTCATGCCTTTTTCAAATTTGTTGCTGCCTAATTCGAGTGCTACTCTAGc                                                                          <  2:117871/141‑1 (MQ=255)

                                                          taataaTATTTCATTATCTAAATTTTTGTTTGAAATTTGAGCATTATAAAATGGATAATCACTTGGTATATCTTCACCAAAACCTAGTTTTTTCATGCCTTTTTCAAATTTCTTACTGCCTAATTCGAGTGCTACTCTAGc                                                                          <  1:151823/141‑1 (MQ=255)

                                                             taataTTTCATTATCTAAATTTTTGTTTGAAATTTGAGCATTATAAAATGGATAATCACTTGGTATATCTTCACCAAAACCTAGTTTTTTCATGCCTTTTTCAAATTTCTTACTGCCTAATTCGAGTGCTACTCTAGCaaa                                                                       <  2:87285/141‑1 (MQ=255)

                                                                 atTTCATTATCTAAATTTTTGTTTGAAATTTGAGCATTATAAAATGGATAATCACTTGGTATATCTTCACCAAAACCTAGTTTTTTCATGCCTTTTTCAAATTTCTTACTGCCTAATTCGATTGCTACTCTCGCAAAGaaa                                                                   >  2:53272/1‑141 (MQ=255)

                                                                 atTTCATTATCTAAATTTTTGTTTGAAATTTGAGCATTATAAAATGGATAATCACTTGGTATATCTTCACCAAAACCTAGTTTTTTCATGCCTTTTTCAAATTTCTTACTGCCTAATTCGAGTGCTACTCTAGCAAAGaaa                                                                   >  2:246402/1‑141 (MQ=255)

                                                                  tttCATTATCTAAATTTTTGTTTGAAATTTGAGCATTATAAAATGGATAATCACTTGGTATATCTTCACCAAAACCTAGTTTTTTCATGCCTTTTTCAAATTTCTTACTGCCTAATTCGAGTGCTACTCTAGCAAAGaaaa                                                                  <  2:231542/141‑1 (MQ=255)

                                                                    tCATTATCTACATTTTTTTTTGAAATTGGAGCAATATAAAATGCATAATCACTTGGTATATCTTCACCAAAACCTAGTTTTTTCATGCCTTTTTCAAATTTCTTACTGCCTAATTCGAGTGCTACTCTAGCAAAGAAAATg                                                                <  2:143870/141‑1 (MQ=255)

                                                                     cATTATCTAAATTTTTGTTTGAAATTTGAGCATTATAAAATGGATAATCACTTGGTATATCTTCACCAAAACCTAGTTTTTTCATGCCTTTTTCAAATTTCTTACTGCCTAATTCGAGTGCTACTCTAGCAAAGAAAATGt                                                               >  2:105173/1‑141 (MQ=255)

                                                                       ttATCTAAATTTTTGTTTGAAATTTGAGCATTATAAAATGGATAATCCCTTGGTATATCTTCACCAAAACCTAGTTTTTTCATGCCTTTTTCAAATTTCTTACTGCCTAATTCGAGTGCTACTCTAGCAAAGAAAATGTTa                                                             <  1:596536/141‑1 (MQ=255)

                                                                         aTCTAAATTTTTGTTTGAAATTTGAGCATTATAAAATGGATAATCACTTGGTATATCTTCACCAAAACCTAGTTTTTTCATGCCTTTTTCAAATTTCTTACTGCCTAATTCGAGTGCTACTCTAGCAAAGAAAATGTTATc                                                           >  1:557799/1‑141 (MQ=255)

                                                                               aTTTTTGTTTGAAATTTGAGCATTATAAAATGGATAATCACTTGGTATATCTTCACCAAAACCTAGTTTTTTCATGCCTTTTTCAAATTTCTTACTGCCTAATTCGAGTGCTACTCTGGCAAAGAGAATGTTATGtgatgg                                                     >  1:23425/1‑140 (MQ=255)

                                                                                 ttttGTTTGAAATTTGAGCATTATAAAATGGATAATCACTTGGTATATCTTCACCAAAACCTAGTTTTTTCATGCCTTTTTCAAATTTCTTACTGCCTAATTCGAGTGCTACTCTAGCAAAGAAAATGTTATCTGATGAtt                                                   <  2:690205/141‑1 (MQ=255)

                                                                                  tttgtttgAGATTTGAGCATTATAAAATGGATAATCACTTGGTATATCTTCACCAAAACCTAGTTTTTTCATGCCTTTTTCAAATTTCTTACTGCCTAATTCGAGTGCTACTCTAGCAAAGAAAATGTTATCTGATGATTc                                                  >  1:156602/1‑141 (MQ=255)

                                                                                  tttgttcgAAAACTGAGCATTATAACATGGATAATCACTTTTTATTTCTTCACCAGAACCTAGTTTTTTCATGCCTTTTTCAAATTTCTTACTGCCTAATTCGAGTGCTACTCGAGCAAAGAAAATGTTATCTGATGATTc                                                  <  2:306419/141‑1 (MQ=255)

                                                                                    tgtttgAAATTTGAGCATTATAAAATGGATAATCACTTGGTATATCTTCACCAAAACCTAGTTTTTTCATGCCTTTTTCAAATTTCTTACTGCCTAATTCGAGTGCTACTCTAGCAAAGAAAATGTTATCTGATGATTCTa                                                <  1:633284/141‑1 (MQ=255)

                                                                                       ttgAAATTTGAGCATTATAAAATGGATAATCACTTGGTATATCTTCACCAAAACCTAGTTTTTTCATGCCTTTTTCAAATTTCTTACTGCCTAATTCGAGTGCTACTCTAGCAAAGAAAATGTTATCTGATGATTCTATTg                                             >  1:88697/1‑141 (MQ=255)

                                                                                        tgAAATTTGAGCATTAGAGAATGGATAATCACTTGGTATATCTTCACCAAAAGCTAGTTTTTTCATGCCTTTTTCAAATGTCTTAGTGCCTAATTCGAGTGCTACGCGAGGAAAGAGAAGGTTAGCGGGTGATTCTAGTGc                                            <  2:136873/141‑1 (MQ=255)

                                                                                          aaaTTTGAGCATTATAAAATGGATAATCACTTGGTATATCTTCACCAAAACCTAGTTTTTTCATGCCTTTTTCAAATTTCTTACTGCCTAATTCGAGTGCTACTCTCGCCTAGCAAATGTTATCTGATGATTCTATTGCtt                                          <  1:686164/141‑1 (MQ=255)

                                                                                              ttGAGCATTATAAAATGGATAATCACTTGGTATATCTTCACCAAAACCTAGTTTTTTCATGCCTTTTTCAAATTTCTTACTGCCTAATTCGAGTGCTACTCTAGCAAAGAAAATGTTATCTGATGATTCTATTGCTTGttt                                      <  1:689233/141‑1 (MQ=255)

                                                                                               tGAGCATTATAAAATGGATAATCACTTGGTATATCTTCACCAAAACCTAGTTTTTTCATGCCTTTTTCAAATTTCTTACTGCCTAATTCGAGTGCTACTCTAGCAAAGAAAATGTTATCTGATGATTCTATTGCTTGtttt                                     >  1:121822/1‑141 (MQ=255)

                                                                                                  gCATTATAAAATGGATAATCACTTGGTATATCTTCACCAAAACCTAGTTTTTTCATGCCTTTTTCAAATTTCTTACTGCCTAATTCGAGTGCTACTCTAGCAAAGAAAATGTTATCTGATGATTCTATTGCTTGTTTTAAg                                  >  1:71965/1‑141 (MQ=255)

                                                                                                   cATTATAAAATGGATAATCACTTGGTATATCTTCACCAAAACCTAGTTTTTTCATGCCTTTTTCAAATTTCTTACTGCCTAATTCGAGTGCTACTCTAGCAAAGAAAATGTTATCTGATGATTCTATTTCTTGTTTTAAGt                                 >  2:35727/1‑141 (MQ=255)

                                                                                                    aTTATAAAATGGATAATCACTTGGTATATCTTCACCAAAACCTAGTTTTTTCATGCCTTTTTCAAATTTCTTACTGCCTAATTCGAGTGCTACTCTAGCAAAGAAAATGTTATCTGATGATTCTATTGCTTGTTTTAAGTc                                <  2:372511/141‑1 (MQ=255)

                                                                                                    aTTATAAAATGGATAATCACTTGGTATATCTTCACCAAAACCTAGTTTTTTCATGCCTTTTTCAAATTTCTTACTGCCTAATTCGAGTGCTACTCTAGCAAAGAAAATGTTATCTGATGATTCTATTGCTTGTTTTAAGTc                                <  1:521732/141‑1 (MQ=255)

                                                                                                     ttATAAAATGGATAATCACTTGGTATATCTTCACCAAAACCTAGTTTTTTCATGCCTTTTTCAAATTTCTTACTGCCTAATTCGAGTGCTACTCTAGCAAAGCAAATGTTATCTGATGATTCTATTGCTTGTTTTAAGTCg                               >  2:41580/1‑141 (MQ=255)

                                                                                                          aaaTGGATAATCACTTGGTATATCTTCACCAAAACCTAGTTTTTTCATGCCTTTTTCAAATTTCTTACTGCCTAATTCGAGTGCTACTCTAGCAAAGAAAATGTTATCTGATGATTCTATTGCTTGTTTTAAGTCGATAtt                          >  1:168316/1‑141 (MQ=255)

                                                                                                            aTGGATAATCACTTGGTATATCTTCACCAAAACCTAGTTTTTTCATGCCTTTTTCAAATTTCTTACTGCCTAATTCTAGTGCTACTCTAGCAAAGAAAATGTTATCTGATGATTCTATTGCTTGTTTTAAGTCGATATTAc                        >  2:521150/1‑141 (MQ=255)

                                                                                                               gATAATCACTTGGTATATCTTCACCAAAACCTAGTTTTTTCATGCCTTTTTCAAATTTCTTACTGCCTAATTCGAGTGCTACTCTAGCAAAGAAAATGTTATCTGATGATTCTATTGCTTGTTTTAAGTCGATATTACCAt                     <  1:128500/141‑1 (MQ=255)

                                                                                                                aTAATCACTTGGTATATCTTCACCAAAACCTAGTTTTTTCATGCCTTTTTCAAATTTCTTACTGCCTAATTCGAGTGCTACTCTAGCAAAGAAAATGTTATCTGATGATTCTATTGCTTGTTTTAAGTCGATATTACCAtt                    <  2:71965/141‑1 (MQ=255)

                                                                                                                aTAATCACTTGGTATATCTTCACCAAAACCTAGTTTTTTCATGCCTTTTTCAAATTTCTTACTGCCTAATTCGAGTGCTACTCTAGCAAAGAAAATGTTATCTGATGATTCTATTGCTTGTTTTAAGTCGATATTACCAtt                    <  1:589490/141‑1 (MQ=255)

                                                                                                                aTAATCACTTGGTATATCTTCACCAAAACCTAGTTTTTTCATGCCTTTTTCAAATTTCTTACTGCCTAATTCGAGTGCTACTCTAGCAAAGAAAATGTTATCTGATGATTCTATTGCTTGTTTTAAGTCGATATTACCAtt                    <  1:244935/141‑1 (MQ=255)

                                                                                                                 tAATCACTTGGTACATCTTCACCAAAACCTAGTTTTTTCATGCCTTTTTCAAATTTCTTACTGCCTAATTCGAGTGCTACTCTAGCAAAGAAAATGTTATCTGATGATTCTATTGCTTGTTTTAAGTCGATACTACCAttt                   <  2:378713/141‑1 (MQ=255)

                                                                                                                      aCTTGGTATATCTTCACCAAACCCTAGTTTTTTCATGCCTTTTTCAAATTTCTTACTGCCTAATTCGAGTGCTTCTCTAGCAAAGAAAATGTTATCTGATGATTCTATTGCTTGTTTTAAGTCGATATTACCATTTACCAc              <  2:403370/141‑1 (MQ=255)

                                                                                                                      aCTTGGTATATCTTCACCAAAACCTAGTTTTTTCATGCCTTTTTCAAATTTCTTACTGCCTAATTCGAGTGCTACTCTAGCAAAGAAAATGTTATCTGATGATTCTATTGCTTGTTTTAAGTCGATATTACCATTTACCAc              <  2:37660/141‑1 (MQ=255)

                                                                                                                       cTTGGTATATCTTCACCAAAACCTAGTTTTTTCATGCCTTTTTCAAATTTCTTACTGCCTAATTCTAGTGCTACTCTAGCAAAGAAAATGTTATCTGATGATTCTATTGCTTGTTTTAAGTCGATATTACCATTTACCACt             <  1:521150/141‑1 (MQ=255)

                                                                                                                       cTTGGTATATCTTCACCAAAACCTAGTTTTTTCATGCCTTTTTCAAATTTCTTACTGCCTAATTCGAGTGCTACTCTAGCAAAGAAAATGTTATCTGATGATTCTATTGCTTGTTTTAAGTCGATATTACCATTTAcacat             >  2:272236/1‑137 (MQ=255)

                                                                                                                       attGGTATATCTTCACCAAAACCTAGTTTTTTCATGCCTTTTTTTTTTTTTTTTCTGCCTAATTCGAGTGATACTATATCAAAGAAATTGTTATGTGATGATTCTTTTGCTTGTTTTTATTTGATATTACGAttttatact             >  2:579869/2‑135 (MQ=255)

                                                                                                                           gTATATCTTCACCAAAACCTAGTTTTTTCATGCCTTTTTCAAATTTCTTACTGCCTAATTCGAGTGCTACTCTAGCAAAGAAAATGTTATCTGATGATTCTATTGCTTGTTTTAAGTCGATATTACCATTTAGCACTTCat         >  1:352779/1‑141 (MQ=255)

                                                                                                                            tataTCTTCACCAAAACCTATTTTTTGCAATCCTTTTTCAAATTTCTTACTGCCGAATTCGAGTGCTACTCTAGCAAAGAAAATGTTATCTGATGATTCTATTGCTTGTTTTAAGTCGATATTACCATTTACCACTTCata        <  1:313800/141‑1 (MQ=255)

                                                                                                                            tataTCTTCACCAAAACCTAGTTTTTTCATGCCTTTTTCAAATTTCTTACTGCCTAATTCGAGTGCTACTCTAGCAAAGAAACTGTTATCTGATGATTCTATTGCTTGTTTTAAGTCGATATTCCCATTTACAACTTCata        >  2:621566/1‑141 (MQ=255)

                                                                                                                             atatCTTCACCAAAACCTAGTTTTTTCATGCCTTTTTCAAATTTCTTACTGCCTAATTCGAGTGCTACTCTAGCAAAGAAAATGTTATCTGATGATTCTATTGCTTGTTTTAAGTCGATATTACCATTTACCACTTCatat       >  2:75936/1‑141 (MQ=255)

                                                                                                                              tatGTTCACCAAAACCTAGTTTTTTCATGCCTTTTTCAAATTTCTTACTGCCTAATTCGAGTGCTACTCTAGCAAAGAAAATGTTATCAGATGATTCTATTGCTTGATTTAAGTCGATATTACCATTTACAACTTCATATc      >  1:499517/1‑141 (MQ=255)

                                                                                                                              tatCTTCACCAAAACCTAGTTTTTTCATGCCTTTTTCAAATTTCTTAGTGCCTAATTCGAGTGCTACTCTAGCAAAGAAAATGTTATCTGATGATTCTATTGCTTGTTTTAAGTCGATATTACCATTTACCACTTCATATc      >  1:196835/1‑141 (MQ=255)

                                                                                                                              tatCTTCACCAAAACCTAGTTTTTTCATGCCTTTTTCAAATTTCTTACTGCCTAATTCGAGTGCTACTCTAGCAAAGAAAATGTTATCTGATGATTCTATTGCTTGTTTTAAGTCGATATTACCATTTACCACTTCATATc      <  1:665292/141‑1 (MQ=255)

                                                                                                                                  ttCACCAAAACCTAGTTTTTTCATGCCTTTTTCAAATTTCTTACTGCCTAATTCGAGTGCTACTCTAGCAAAGAAAATGTTATCTGATGATTCTATTGCTTGTTTTAAGTCGATATTACCATTTACCACTTCATATCTTGt  >  1:219444/1‑141 (MQ=255)

TTGAAAGGATCTGTACTGGGTTAATCAGTATTTCACCTTGTCCGTAACCTGAATCAGCTAATAATATTTCATTATCTAAATTTTTGTTTGAAATTTGAGCATTATAAAATGGATAATCACTTGGTATATCTTCACCAACACCTAGTTTTTTCATGCCTTTTTCAAATTTCTTACTGCCTAATTCGAGTGCTACTCTAGCAAAGAAAATGTTATCTGATGATTCTATTGCTTGTTTTAAGTCGATATTACCATTTACCACTTCATATCTTGT  >  CP000730/39534‑39804

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A