Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A19 F166 I1 R1 27 92.7 1999278 95.2% 1903312 141.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA CP000730 39,672 C→A V488F (GTT→TTT)  mecA ← penicillin binding protein 2 prime

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP00073039,6720CA98.4% 191.7 / NA 64V488F (GTT→TTT) mecApenicillin binding protein 2 prime
Reads supporting (aligned to +/- strand):  ref base C (1/0);  new base A (33/30);  total (34/30)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

GATCTGTACTGGGTTAATCAGTATTTCACCTTGTCCGTAACCTGAATCAGCTAATAATATTTCATTATCTAAATTTTTGTTTGAAATTTGAGCATTATAAAATGGATAATCACTTGGTATATCTTCACCAACACCTAGTTTTTTCATGCCTTTTTCAAATTTCTTACTGCCTAATTCGAGTGCTACTCTAGCAAAGAAAATGTTATCTGATGATTCTATTGCTTGTTTTAAGTCGATATTACCATTTACCACTTCATATCTTGTAACG  >  CP000730/39541‑39808
                                                                                                                                   |                                                                                                                                        
gATCTGTACTGGGTTAATCAGTATTTCACCTTGTCCGTAACCTGAATCAGCTAATAATATTTCATTATCTAAATTTTTGTTTGAAATTTGAGCATTATAAAATGGATAATCACTTGGTATATCTTCACCAAAACCTAGttt                                                                                                                                 >  1:115030/1‑141 (MQ=255)
gATCTGTACTGGGTTAATCAGTATTTCACCTTGTCCGTAACCTGAATCAGCTAATAATATTTCATTATCTAAATTTTTGTTTGAAATTTGAGCATTATAAAATGGATAATCACTTGGTATATCTTCACCAAAACCTAGttt                                                                                                                                 >  1:397780/1‑141 (MQ=255)
 aTCTGTACTGGGTTAATCAGTATTTCACCTTGTCCGTAACCTGAATCAGCTAATAATATTTCATTATCTAAATTTTTGTTTGAAATTTGAGCATTATAAAATGGATAATCACTTGGTATATCTTCACCAAAACCTAGtttt                                                                                                                                >  2:947358/1‑141 (MQ=255)
  tCTGTACTGGGTTAATCAGTATTTCACCTTGTCCGTAACCTGAATCAGCTAATAATATTTCATTATCTAAATTTTTGTTTGAAATTTGAGCATTATAATATGGATAATCCCGAGGTATATTTTCACCAAAACCTAGttttt                                                                                                                               >  1:376560/1‑141 (MQ=255)
    tGTACTGGGTTAATCAGTATTTCACCTTGTCCGTAACCTGCATCAGCTAATAATATTTCATTATCTAAGTTTTTGTTTGAAATTTGAGCATTATAAAATGGATAATCACTTGGTATATCTTCACCAAAACCTAGTTTTTTc                                                                                                                             >  1:774868/1‑141 (MQ=255)
    tGTACTGGGTTAATCAGTATTTCACCTTGTCCGTAACCTGAATCAGCTAATAATATTTCATTATCTAAATTTTTGTTTGAAATTTGAGCATTATAAAATGGATAATCACTTGGTATATCTTCACCAAAACCTAGTTTTTTc                                                                                                                             >  1:458264/1‑141 (MQ=255)
     gTACTGGGTTAATCAGTATTTCACCTTGTCCGTAACCTGAATCAGCTAATAATATTTCATTATCTAAATTTTTGTTTGAAATTTGAGCATTATAAAATGGATAATCACTTGGTATATCTTCACCAAAACCTAGTTTTTTCa                                                                                                                            <  1:34275/141‑1 (MQ=255)
     gTACTGGGTTAATCAGTATTTCACCTTGTCCGTAACCTGAATAAGCTAATAATATTTCATTATCTAAATTTTTGTTTGAAATTTGAGCATTATAAAATGGATAATCACTTGGTCTATCTTCACCAAAACCTAGTTTTTTCa                                                                                                                            >  2:162800/1‑141 (MQ=255)
      tACTGGGTTAATCAGTATTTCACCTTGTCCGTAACCTGAATCAGCTAATAATATTTCATTATCTAAATTTTTGTTTGAAATTTGAGCATTATAATATGGATAATCACTTGGTATATCTTCACCAAAACCTAGTTTTTTCAt                                                                                                                           >  1:280731/1‑141 (MQ=255)
              tAATCAGTATTTCACCTTGTCCGTAACCTGAATCAGCTAATAATATTTCATTATCTAAATTTTTGTTTGAAATTTGAGCATTATAAAATGGATAATCACTTGGTATATCTTCACCAAAACCTAGTTTTTTCATGCCttttt                                                                                                                   <  2:71161/141‑1 (MQ=255)
                  cAGTATTTCACCTTGTCCGTAACCTGAATCAGCTAATAATATTTCATTATCTAAATTTTTGTTTGAAATTTGAGCATTATAAAATGGATAATCACTTGGTATATCTTCACCAACACCTAGTTTTTTCATGCCTTTTTCaaa                                                                                                               >  1:874998/1‑141 (MQ=255)
                  cAGTATTTCACCTTGTCCGTAACCTGAATCAGCTAATAATATTTCATTATCTAAATTTTTGTTTGAAATTTGAGCATTATAAAATGGATAATCACTTGGTATATCTTCACCAAAACCTAGTTTTTTGATGCCTTTTTCaaa                                                                                                               <  2:675752/141‑1 (MQ=255)
                  cAGTATTTCACCTTGTCCGTAACCTGAATCAGCTAATAATATTTCATTATCTAAATTTTTGTTTGAAATTTGAGCATTATAAAATGGATAATCACTTGGTATATCTTCACCAAAACCTAGTTTTTTAATGCCTTTTTCaaa                                                                                                               >  2:932931/1‑141 (MQ=255)
                   cgTATTGCAACTTGTCCGTAACCTGAATCAGCTAATAATATTTCATTATCTAAATTTTTGTTTGCAATTTGAGCATTATAAAATGGATAATCACTTGGTATATCTTCCCCAAAACCTAGTTTTTTCATGCCTTTTTCAAAt                                                                                                              <  2:769308/140‑1 (MQ=255)
                   aGTATTTCACCTTGTCCGTAACCTGAATCAGCTAATAATATTTCATTATCTAAATTTTTGTTTGAAATTTGAGCATTATAAAATGGATAATCACTTGGTATATCTTCACCAAAACCTAGTTTTTTCATGCCTTTTTCAAAt                                                                                                              <  1:773132/141‑1 (MQ=255)
                    ttataTCATCTTCCCCGTAACCTGAATCAGCTAATAATATTTCCTTATCTAAATTTTTGTTTGAAATTTGAGCATTATAAAATGGATAATCACTTGGTATATCTTCCCCAAAACCTAGTTTCTTCATGCCTTCTTCAAAtt                                                                                                             <  2:524274/140‑1 (MQ=255)
                    gTATTTCACCTTGTCCGTAACCTGAATCAGCTAATAATATTTCATTATCTAAATTTTTGTTTGAAATTTGAGCATTATAAAATGGATAATCACTTGGTATATCTTCACCAAAACCTAGTTTTTTCATGCCTTTTTCAAAtt                                                                                                             >  1:216779/1‑141 (MQ=255)
                      aTTTCACCTTGTCCGTAACCTGAATCAGCTAATAATATTTCATTATCTAAATTTTTGTTTGAAATTTGAGCATTATAAAATGGATAATCACTTGGTATATCTTCACCAAAACCTAGTTTTTTCATGCCTTTTTCAAATTTc                                                                                                           <  2:967218/141‑1 (MQ=255)
                          cACCTTGTCCGTAACCTGAATCAGCTAATAATATTTCATTATCTAAATTTTTGTTTGAAATTTGAGCGTTATAAAATGTATAATCACTTGGTATATCTTCACCAAAACCTAGTTTTTTCATGCCTTTTTCAAATTTCTTAc                                                                                                       <  2:429077/141‑1 (MQ=255)
                          cACCTTGTCCGTAACCTGAATCAGCTAATAATATTTCATTATCTAAATTTTTGTTTGAAATTTGAGCGTTATAAAATGGATAATCACTTGGTATATCTTCACCAAAACCTAGTTTTTTCATGCCTTTTTCAAATTTCTTAc                                                                                                       <  2:502195/141‑1 (MQ=255)
                           aCCTTGTCCGTAACCTGAATCAGCTAATAATATTTCATTATCTAAATTTTTGTTTGAAATTTGAGCATTATAAAATGGATAATCACTTGGTATATCTTCACCAAAACCTAGTTTTTTCATGCCTTTTTCAAATTTCTTACt                                                                                                      >  2:141947/1‑141 (MQ=255)
                           aCCCTGTCCGTAACCTGAATCAGCTAATAATATTTCATTATCTAAATTTTTGTTTGAAATTTGAGCATTATAAAATGGATAATCACTTGGTATATCTTCACCAAAACCTAGTTTTTTCATGCCTTTTTCAAATTTCTTACt                                                                                                      <  2:858654/141‑1 (MQ=255)
                             cTTGTCCGTAACCTGAATCAGCTAATAATATTTCATTATCTAAATTTTTGTTTGAAATTTGAGCATTATAAAATGGATAATCACTTGGTATATCTTCACCAAAACCTAGTTTTTTCATGCCTTTTTCAAATTTCTTTCTGc                                                                                                    >  1:69730/1‑141 (MQ=255)
                                  ccGTAACCTGAATCAGCTAATAATATTTCATTATCTAAATTTTTGTTTGAAATTTGAGCATTATAAAATGGATAATCACTTGGTATATCTTCACCAAAACCTAGTTTTTTCATGCCTTTTTCAAATTTCTTACTGCCTAAt                                                                                               >  2:171793/1‑141 (MQ=255)
                                   cGTAACCTGAATCAGCTAATAATATTTCATTATCTAAATTTTTGTTTGAAATTTGAGCATTATAAAATGGATAATCACTTGGTATATCTTCACCAAAACCTAGTTTTTTCATGCCTGTTTCAAATTTCTTACTGCCTAAtt                                                                                              >  1:654102/1‑141 (MQ=255)
                                     tAACCTGAATCAGCTAATAATATTTCATTATCTAAATTTTTGTTTGAAATTTGAGCATTATAAAATGGATAATCACTTGGTATATCTTCACCAAAACCTAGTTTTTTCATGCCTTTTTCAAATTTCTTACTGCCTAATTCg                                                                                            <  2:454446/141‑1 (MQ=255)
                                     gaaCCTGAATCAGCTAATAATATTTCATTATCTAAATTTTTGTTTGAAATTTTAGCATTATAAAATGGATAATCACTTGGTATATCTTCACCAAAACCTAGTTTTTTCATGCCTTTTTCAAATTTCTTACTGCCTAATTCg                                                                                            <  2:53686/140‑1 (MQ=255)
                                      aaCCTTAATCAGCTAATAATATTTCATTATCTAAATTTTTGTTTGAAACTTGATCATTAAAAAATGGATAATCACTTGGTATATCTTCACCAAAACCTAGTTTTTTCATGCCTTTTTCAAATTTCTTACTGCCTAATTCGa                                                                                           <  2:18929/141‑1 (MQ=255)
                                      aaCCTGAATCAGCTAATAATATTTCATTATCTATATTTTTGTTTGAAATTTGAGCATTATAAAATGGATAATCACTTGGTATATCTTCACCAAAACCTAGTTTTTTCATGCCTTTTTCTAATTTCTTACTGCCTAATTCGa                                                                                           <  2:585629/141‑1 (MQ=255)
                                         cTGAATCAGCTAATAATATTTCATTATCTAAATTTTTGTTTGAAATTTGAGCATTATAAAATGGATAATCACTTGGTATATCTTCACCAAAACCTAGTTTTTTCATGCCTTTTTCAAATTTCTTACTGCCTAATTCGAGTg                                                                                        <  1:214248/141‑1 (MQ=255)
                                            aagaatcTAATAATATTTTTCTAATAAAAGTTTTTTGTGAAATTTGAGCATTATAAAATGGATAATCACTTGGTATATCTTCACCAAAACCTAGTTTTTTCATGCCTTTTTCAAATTTCTTACTGCCTAATTCGAGTGCTa                                                                                     <  2:949380/135‑1 (MQ=255)
                                            aaTCAGCTAATAATATTTCATTATCTAAATTTTTGTTTGAAATTTGAGCATTATAAAATGGATAATCACTTGGTATATCTTCACCAAAACCTAGTTTTTTCATGCCTTTTTCAAATTTCTTACTGCCTAATTCGAGTGCTa                                                                                     <  2:143300/141‑1 (MQ=255)
                                                 gCTAATAATATTTCATTATCTAAATTTTTGTTTGAAATTTGAGCATTATAAAATGGATAATCACTTGGTATATCTTCACCAAAACCTAGTTTTTTCATGCCTTTTTCAAATTTCTTACTGCCTAATTCGAGTGCTACTCTa                                                                                <  1:242982/141‑1 (MQ=255)
                                                  cTAATAATATTTCATTATCTAAATTTTTGTTTGAAATTTGAGCATTATAAAATGGATAATCACTTGGTATATCTTCACCAAAACCTAGTTTTTTCATGCCTTTTTCAAATTTCTTACTGCCTAATTCGAGTGCTACTCTAg                                                                               <  2:944928/141‑1 (MQ=255)
                                                            ttCATTATCTAAATTTTTGTTTGAAATTTGAGCATTATAAAATGGATAATCACTTGGTATATCTTCACCAAAACCTAGTTTTTTCATGCCTTTTTCAAATTTCTTACTGCCTAATTCGAGTGCTACTCTAGCAAAGAAAAt                                                                     >  2:862634/1‑141 (MQ=255)
                                                               aTTATCTAAATTTTTGTTTGAAATTTGAGCATTATAAAATGGATAATCACTTGGTATATCTTCACCAAAACCTAGTTGTTTCATGCCTTTTTCAAATTTCTTACTGCCTAATCCGAGTGCTCCTCAAGCAAAGAAAAAGtt                                                                  >  1:318386/1‑141 (MQ=255)
                                                                   tCTAAATTTTTGTTTGAAATTTGAGCATTATAAAATGGATAATCACTTGGTATATCTTCACCAAAACCTAGTTTTTTCATGCCTTTTTCAAATTTCTTACTGCCTAATTCGAGTGCTACTCTAGCAAAGAAAATGTTATCt                                                              >  1:965272/1‑141 (MQ=255)
                                                                     tAAATTTTTGTTTGAAATTTGAGCATTATAAAATGGATAATCACTTGGTATATCTTCACCAAAACCTAGTTTTTTCATGCCTTTTTTAATTTTTTTACTGCCTAATTCGAGTGCTACTCTAGCAAAGAAAATGTTATTtga                                                            >  2:577529/1‑141 (MQ=255)
                                                                       aaTTTTTGTTTGAACTTTGAGCATTATAAAATGGATAATCACTTGGTATATCTTCACCAAAACCTAGTTTTTTCATGCCTTTTTCAAATTTCTTACTGCCTAATTCGAGTGCTACTCTAGCAAAGAATATGTTATCttatg                                                          >  1:547541/1‑141 (MQ=255)
                                                                       aaTTTTTGTTTGAAATTTGAGCATTATAAAATGGATAATCACTTGGTATATCTTCACCAAAACCTAGTTTTTTCATGCCTTTTTCAAATTTCTTACTGCCTAATTCGAGTGCTACTCTAGCAAAGAAAATGTTATctgctg                                                          >  1:213357/1‑141 (MQ=255)
                                                                       aaTTTTTGTTTGAAATTTGAGCATTATAAAATGGATAATCACTTGGTATATCTTCACCAAAACCTAGTTTTTTCATGCCTTTTTCAAATTTCTTACTGCCTAATTCGAGTGCTACTCTAGCAAAGAAAATGTTATCtgatg                                                          >  1:523207/1‑141 (MQ=255)
                                                                       aaTTTTTGTTTGAAATTTGAGCATTATAAAATGGATAATCACTTGGTATATCTTCACCAAAACCTAGTTTTTTCATGCCTTTTTCAAATTTCTTACTGCCTAATTCGAGTGCTACTCTAGCAAAGAAAATGTTATCtgatg                                                          >  2:843696/1‑141 (MQ=255)
                                                                         tttttGTTTGAAATTTGAGCATTATAAAATGGATAATCACTTGGTATATCTTCACCAAAACCTAGTTTTTTCATGCCTTTTTCAAATTTCTTACTGCCTAATTCGAGTGCTACTCTAGCAAAGAAAATGTTATCTgatgat                                                        >  2:655359/1‑141 (MQ=255)
                                                                              gtttgAAATTTGAGCATTATAAAATGGATAATCACTTGGTATATCTTCACCAAAACCTAGTTTTTTCATGCCTTTTTCAAATTTCTTACTGCCTAATTCGAGTGCTACTCTAGCAAAGAAAATGTTATCTGATGATTCTAt                                                   >  1:829100/1‑141 (MQ=255)
                                                                                 tgAAATTTGAGCATTATAAAATGGATAATCACTTGGTTTATCTTCACCAAAACCTCGTTTTTTCATGCCTTTTTCAAATTTCTTACTGCCTAATTCGAGTGCTACTCTAGCAAAGAAAATGTTATCTGATGATTCTATTGc                                                <  1:977546/141‑1 (MQ=255)
                                                                                 tgAAATTTGAGCATTATAAAATGGATAATCACTTGGTATATCTTCACCAAAACCTAGTTTTTTCATGCCTTTTTCAAATTTCTTACTGCCTAATTCGAGTGCTACTCTAGCAAAGAAAATGTTATCTGATGATTCTATTGc                                                >  2:326980/1‑141 (MQ=255)
                                                                                 tgAAATTTGAGCATTATAAAATGGATAATCACTTGGTATATCTTCACCAAAACCTAGTTTTTTCATGCCTTTTTCAAATTTCTTACTGCCTAATTCGAGTGCTACTCTAGCAAAGAAAATGTTATCTGATGATTCTATTGc                                                >  2:61276/1‑141 (MQ=255)
                                                                                 tgAAATTTGAGCATTATAAAATGGATAATCACTTGGTATATCTTCACCAAAACCTAGTTTTTTCATGCCTTTTTCAAATTTCTTACTGCCTAATTCGAGTGCTACTCTAGCAAAGAAAATGTTATCTGATGATTCTATTGc                                                >  2:933651/1‑141 (MQ=255)
                                                                                 tgAAATTTGAGCATTATAAAATGGATAATCACTTGGTATATCTTCACCAAAACCTAGTTTTTTCATGCCTTTTTCAAATTTCTTACTGCCTAATTCGAGTGCTACTCTAGCAAAGAAAATGTTATCTGATGATTCTATTGc                                                >  1:352103/1‑141 (MQ=255)
                                                                                   aaaTTCGAGCATTATAACATGGATAATCACTTGGTATATCATCACCAAAACCTAGTTTTTTCATGCGTTTTTCAAATTTCTTACGGCCTAATCCGAGTGCTACTCTAGCAAAGAAAATGTTATCTGATGATTCTATTGCtt                                              >  1:733327/1‑141 (MQ=255)
                                                                                          aGCATTATAAAATGGATAATCACTTGGTATATCTTCACCAAAACCTAGTTTTTTCATGCCTTTTTCAAATTTCTTACTGCCTAATTCGAGTGCTACTCTAGCAAAGAAAATGTTATCTGATGATTCTATTGCTTGTTTTaa                                       >  1:217801/1‑141 (MQ=255)
                                                                                           gCATTATAAAATGGATAATCACTTGGTATATCTTCACCAAAACCTAGTTTTTTCATGCCTTTTTCAAATTTCTTACTGCCTAATTCGAGTGCTACTCTAGCAAAGAAAATGTTATCTGATGATTCTATTGCTTGTTTTAAg                                      <  1:947358/141‑1 (MQ=255)
                                                                                              ttAAAAAATGGATAATCACTTGGTATATCTTCACCAAAACCTAGTTTTTTCATGCCTTTTTCAAATTTCTTACTGCCTAATTCGAGTGCTACTCTAGCAAAGAAAATGTTATCTGATGATTCTATTGCTTGTTTTAAGTCg                                   <  1:231367/141‑1 (MQ=255)
                                                                                                 taAAATGGATAATCACTTGGTATATCTTCACCAAAACCTAGTTTTTTCATGCCTTTTTCAAATTTCTTACTGCCTAATTCGAGTGCTACTCTAGCAAAGAAAATGTTATCTGATGATTCTATTGCTTGTTTTAAGTCGata                                <  2:717274/141‑1 (MQ=255)
                                                                                                 taAAATGGATAATCACTTGGTATATCTTCACCAAAACCTAGTTTTTTCATGCCTTTTTCAAATTTCTTACTGCCTAATTCGAGTGCTACTCTAGCAAAGAAAATGTTATCTGATGATTCTATTGCTTGTTTTAAGTCGata                                <  2:138887/141‑1 (MQ=255)
                                                                                                   aaaTGGATAATCACTTGGTATATCTTCACCAAAACCTAGTTTTTTCATGCCTTTTTCATATTTTTTTCTGCCTAATTCGAGTGCTACTCTAGCAAAGAATATGTTTTCTGATGATTCTATTGCTTGTTTTATGTCGATAtt                              >  2:174224/1‑141 (MQ=255)
                                                                                                             tCACTTGGTATATCTTCACCAAAACCTAGTTTTTTCATGCCTTTTTTATTTTTCTTTCTGCCTAATTCGAGTGCTACTCTAGCAAAGAAAATGTTATCTGATGATTCTATTGCTTGTTTTAAGTCGATATTACCATTTAcc                    >  2:307973/1‑141 (MQ=255)
                                                                                                             tCACTTGGTATATCTTCACCAAAACCTAGTTTTTTCATGCCTTTTTCAAATTTCTTACTGCCTAATTCGAGTGCTACTCTAGCAAAGAAAATGTTATCTGATGATTCTATTGCTTGTTTTAAGTCGATATTACCATTTAcc                    >  1:349895/1‑141 (MQ=255)
                                                                                                              cACTTGGTATATCTTCACCAAAACCTAGTTTTTTCATGCCTTTTTCAAATTTCTTACTGCCTAATTCGAGTGCTACTCTAGCAAAGAAAATGTTATCTGATGATTCTATTGCTTGTTTTAAGTCGATATTACCATTTACCa                   <  1:629455/141‑1 (MQ=255)
                                                                                                              cACTTGGTATATCTTCACCAAAACCTAGTATTGGCATGCCGTTTTCAAATTTCTTACTGCCTGATTCGAGTGCTTCTCTAGCAAAGAAAATGTTATCTGATGATTCTATTGCTTGTTTTAAGTCGATATTACCATTTACCa                   <  1:376822/141‑1 (MQ=255)
                                                                                                                cTTGGTATATCTTTACCAAAACCTAGTTTTTTCATGCCTTTTTCAAATTTCTTACTGCCTAATTCGAGTGCTACTCTAGCAAAGAAAATGTTATCTGATGATTCTATTGCTTGTTTTAAGTCGATATTACCATTTACCACt                 <  2:166690/141‑1 (MQ=255)
                                                                                                                    gTATATCTTCACCAAAACCTAGTTTTTTCATGCCTTTTTCAAATTTCTTACTGCCTAATTCGAGTGCTACTCTAGCAAAGAAAATGTTATCTGATGATTCTATTGCTTGTTTTAAGTCGATATTACCATTTACCACTTCat             <  1:413982/141‑1 (MQ=255)
                                                                                                                          cTTCACCAAAACCTAGTTTTTTCATGCCTTTTTCAAATTTCTTACTGCCTAATTCGAGTGCTACTCTAGCAAAGAAAATGTTATCTGATGATTCTATTGCTTGTTTTAAGTCGATATTACCATTTACCACTTCATATCTTg       <  1:758485/141‑1 (MQ=255)
                                                                                                                               ccAAAACCTAGTTTTTTCATGCCTTTTTCAAATTTCTTACTGCCTAATTCGAGTGCTACTCTAGCAAAGAAAATGTTATCTGATGATTCTATTGCTTGTTTTAAGTCGATATTACCATTTACCACTTCATATCTTGTAACg  <  1:418452/141‑1 (MQ=255)
                                                                                                                                   |                                                                                                                                        
GATCTGTACTGGGTTAATCAGTATTTCACCTTGTCCGTAACCTGAATCAGCTAATAATATTTCATTATCTAAATTTTTGTTTGAAATTTGAGCATTATAAAATGGATAATCACTTGGTATATCTTCACCAACACCTAGTTTTTTCATGCCTTTTTCAAATTTCTTACTGCCTAATTCGAGTGCTACTCTAGCAAAGAAAATGTTATCTGATGATTCTATTGCTTGTTTTAAGTCGATATTACCATTTACCACTTCATATCTTGTAACG  >  CP000730/39541‑39808

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A