Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A9 F110 I0 R1 49 71.1 1529928 95.4% 1459551 140.9

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP000730 607,884 G→A 100% R209* (CGA→TGA)  dck ← deoxynucleoside kinase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP000730607,8840GA100.0% 249.4 / ‑6.5 80R209* (CGA→TGA) dckdeoxynucleoside kinase
Reads supporting (aligned to +/- strand):  ref base G (0/0);  major base A (39/40);  minor base T (1/0);  total (40/40)
Rejected as polymorphism: E-value score below prediction cutoff.
Rejected as polymorphism: Frequency below/above cutoff threshold.
Rejected as polymorphism: Variant not supported by required number of reads on each strand.

TATATGTGAATTAATGTATTCGATAGAATTGATAAAATAATCGATAATATCTATGGAATATACATTGAATATAAACATATACGCTATGTCTTTAGTCTTTTATCGTGTATCTACTTGTCGATATGTTTGAATAATTCGA‑GCAATTTTGTTTATCATAGGATTTAAAGATTCGGGGTCCTTATGGATATCATATTCATTAATATTGATACGTACAACTGGACATGCATTAAAGCTATTAATCCAATCGTCATAGCGTTTAAATAGCTTTTTCCAGT  >  CP000730/607747‑608021
                                                                                                                                         |                                                                                                                                          
tataTGTGAATTAATGTATTCGATAGAATTGATAAAATAATCGATAATATCTATGGAATATACATTGAATATAAACATATACGCTATGTCTTTAGTCTTTTATCGTGTATCTACTTGTCGATATGTTTGAATAATTCAA‑Gc                                                                                                                                        <  2:659276/141‑1 (MQ=255)
   atGTGAATTAATGTATTCGATAGAATTGATAAAATAATCGATAATATCTATGGAATATACATTGAATATAAACATATACGCTATGTCTTTAGTCTTTTATCGTGTATCTACTTGTCGATATGTTTGAATAATTCAA‑GCAAt                                                                                                                                     <  1:232267/141‑1 (MQ=255)
        aatgaatgTATTCGATAAAATTGATAAAATAATCGATAATATCTATGGAATATACATTGAATATAAACATATACGCTATGTCTTTAGTCTTTTATCGTGTATCTACTTGTCGATATGTTTGAATAATTCAA‑GCAATTTTGt                                                                                                                                <  2:298951/141‑1 (MQ=255)
         aTTAATGTATTCGATAGAATTGATAAAATAATCGATAATATCTATGGAATATACATTGAATATAAACATATACGCTATGTCTTTACTCTTTTATAGTGTATCTACTTGACGATATGTTTGAATAATTCAA‑GCAATTTTGtt                                                                                                                               >  2:183252/1‑141 (MQ=255)
            aaTGTATTCGATAGAATTGATAAAATAATCGATAATATCTATGGAATATACATTGAATATAAACATATACGCTATGTCTTTAGTCTTTTATCGTGTATCTACTTGTCGATTTGTTTGAATAATTCAA‑ACCATTTTGTTTAt                                                                                                                            >  2:483447/1‑141 (MQ=255)
             aTGTATTCGATAGAATTGATAAAATAATCGATAATATCTATGGAATATACATTGAATATAAACATATACGCTATGTCTTTAGTCTTTTATCGTGTATCTACTTGTCGATATGTTTGAATAATTCAA‑GCAATTTTTTTTAtt                                                                                                                           >  2:531465/1‑140 (MQ=255)
             aTGTATTCGATAGAATTGATAAAATAATCGATAATATCTATGGAATATACATTGAATATAAACATATACGCTATGTCTTTAGTCTTTTATCGTGTATCTACTTGTCGATATGTTTGAATAATTCAA‑GCAATTTTGTTTATc                                                                                                                           <  1:612105/141‑1 (MQ=255)
              tGTATTCGATAGAATTGATAAAATAATCGATAATATCTATGGAGTATACATTGAATATAAACATATACGCTATGTCTTTAGTCTTTGATCGTGTATCTACTTTTCTATATGTTTGAATAATTCAA‑GGAATTTTGTTTATCa                                                                                                                          >  1:179793/1‑141 (MQ=255)
               gTATTCGATAGAATTGATAAAATAATCGATAATATCTATTGAATATACATTGAATATAAACATATACGCTATGTCTTTAGTCTTTTATCGTGTATCTACTTGTCGATATGTTTGAATAATTCAA‑GCAATTTTGTTTATCAt                                                                                                                         <  2:320426/141‑1 (MQ=255)
               gTATTCGATAGAATTGATAAAATAATCGATAATATCTATGGAATATACATTGAATATAAACATATACGCTATGTCTTTAGTCTTTTATCGTGTATATACTTGACAATATTTTTGAATAATTCAA‑GCAATTTTGTTTATCAt                                                                                                                         >  1:139447/1‑141 (MQ=255)
                   tCGATAGAATTGATAAAATAATCGATAATATCTATGGAATATACATTGAATATAAACATATACGCTATGTCTTTAGTCTTTTATCGTGTATCTACTTGTCGATATGTTTGATTAATTCAA‑GCAATTTTGTTTATCATAGGa                                                                                                                     >  1:739031/1‑141 (MQ=255)
                   tCGATAGAATTGATAAAATAATCGATAATATCTATGGAATATACATTGAATATAAACATATACGCTATGTCTTTAGTCTTTTATCGTGTATCTACTTGTCGATATGTTTGAATAATTCAA‑GCAATTTTGTTTATCATAGGa                                                                                                                     >  1:410980/1‑141 (MQ=255)
                       aaGAATTGATAAAATAATCGATAATATCTATGGAATATACATTGAATATAAACATATACGCTATGTCTTTAGTCTTTTATCGTGTATCTACTTGTCGATATGTTTGAATAATTCAA‑GCAATTTTGTTTATCATAGGATTTa                                                                                                                 <  1:233264/140‑1 (MQ=255)
                        aGAATTGATAAAATAATCGATAATATCTATGGAATATACATTGAATATAAACATATACGCTATGTCTTTAGTCTTTTATCGTGTATCTACTTGTCGATATGTTTGAATAATTCAA‑GCAATTTTGTTTATAATAGGATTTaa                                                                                                                >  2:197610/1‑141 (MQ=255)
                        aGAATTGATAAAATAATCGATAATATCTATGGAATATACATTGAATATAAAACTAACCGCAACGAGGAGAGACGTTTATCGTGTATATACTTGTCGATATGTTTGAATAATTCAA‑GCAATTTTGTTTATCATAGGATTTaa                                                                                                                >  2:495026/1‑141 (MQ=255)
                             tGATAAAATAATCGATAATATCTATGGAATATATATTTAATATAAATATAAACGCTATGTCTTTAGTCTTTTATCGTGTATCTACTTGTCGATATGTTTGAATAATTCAA‑GCAATTTTGTTTATCATAGGATTTAAAGAtt                                                                                                           <  2:496973/141‑1 (MQ=255)
                               aTAAAATAATCGATAATATCTATGGAATATACATTGAATATAAACATATACGCTATGTCTTTAGTCTTTTATCGTGTATCTACTTGTCGATATGTTTGAATAATTCAA‑GCAATTTTGTTTATCATAGGATTTAAAGATTCg                                                                                                         >  2:23700/1‑141 (MQ=255)
                               aTAAAATAATCGATAATATCCATGGAATATACATTGAATATAAACATATACGCTATGTCTTTAGTCTTTTATCGTGTATCGCCTTGTCAATATTTTTGAATAATTCAA‑GCAATTTTGTTTATCATAGGATTTAATGATTCg                                                                                                         >  1:475345/1‑141 (MQ=255)
                                tAAAATAATCGATAATATCTATGGAATATACATTGAATATAAACATATACGCTATGTCTTTAGTCTTTTATCGTGTATCTACTTGTCGATATGTTTGAATAATTCAA‑GCAATTTTGTTTATCATAGGATTTAAAGATTCgg                                                                                                        <  1:479458/141‑1 (MQ=255)
                                 aaaaTAATCGATAATATCTATGGAATATACATTGAATATAAACATATACGCTATGTCTTTAGTCTTTTATCGTGTATCTACTTGTCGATATGTTTGAATAATTCAA‑GCAATTTTGTTTATCATAGGATTTAAAGATTCggg                                                                                                       >  1:130545/1‑141 (MQ=255)
                                   aataatCGATAATATCTATGGAATATACATTGAATATAAACATATACGCTATGTCTTTAGTCTTTTATCGTGTATCTACTTGTCGATATGTTTGAATAATTCAA‑GCAATTTTGTTTATCATAGGATTTAATGCTTCGGGGt                                                                                                     >  2:246933/1‑141 (MQ=255)
                                   aataatCGATAATATCTATGGAATATACATTGAATATAAACATATACGCTATGTCTTTAGTCTTTTATCGTGTATCTACTTGTCGATATGTTTGAATAATTCAA‑GCAATTTTGTTTATCATAGGATTTAAAGATTCGGGGt                                                                                                     >  1:17032/1‑141 (MQ=255)
                                    ataatCGATAATATCTATGGAATATACATTGAATATAAACATATACGCTATGTCTTTAGTCTTTTATCGTGTATCTACTTGTCGATATGTTTGAATAATTCAA‑GCAATTTTGTTTATCATAGGATTTAAAGATTCGGGGTc                                                                                                    >  1:421125/1‑141 (MQ=255)
                                     taatCGATAATATCTATGGAATATACATTGAATATAAACATATACGCTATGTCTTTAGTCTTTTATCGTGTATCTACTTGTCGATATGTTTGAATAATTCAA‑GCAATTTTGTTTATCATAGGATTTAAAGATTCGGGGTcc                                                                                                   >  1:606682/1‑141 (MQ=255)
                                         cGATAATATCTATGGAATATACATTGAATATAAACATATACGCTATCTCTTTCGTCTCCTATCGTGTATCTACTTGTCGCTCTGTTTGAATAATTCAA‑GAAATTTTGTTTATCATAGGCTTTAAAGGTTCGGGGTCCTTAt                                                                                               >  2:692226/1‑141 (MQ=255)
                                         cGATAATATACTTGGAATATATATTGAATATAAACATATACGCTATGTCTTTAGTCTTTTATCGTGTATCTACTCGTCGATATGTTTGAATAATTCAA‑GCAATTTTGTTTATCTTAGAATTTAAAGATTCGGGGTCCtaag                                                                                               >  2:618046/1‑138 (MQ=255)
                                           ataattTCTATGGAATATACATTGGATATAAACATAGACGCTATGTCTTTAGTCTTTTATCGGGTATCTACTTGTCGATATGTTTGAATAATTCAA‑GCAATTTTGTTTATCATAGGATTTCGTTAGTCGGGGTCCTTATgg                                                                                             <  2:273436/141‑1 (MQ=255)
                                           ataataTCTATGGAATATACATTGAATATAAACATATACGCTATGTCTTTAGTCTTTTATCGTGTATCTACTTGTCGATATGTTTGAATAATTCAG‑GCAATTTTGTTTATCATAGTATTTGAAGATTCGGGGTCCTTATgg                                                                                             >  1:31710/1‑141 (MQ=255)
                                            taataTCTATGGAATATACCTTGAATATAAACATATACGCTATGTCTTTAGTCTTTTATCGTGTATCTACTTGTCGATATGTTTGAATAATTCAA‑GCAATTTTGTTTATCATAGGATTTAACGATTCGGGTTCCTTATGGa                                                                                            <  2:350994/141‑1 (MQ=255)
                                            taataTCTATGGAATATACATTGAATATAAACATATACGCTATGTCTTTAGTCTTTTATCGTGTATCTACTTGTCGATATGTTTGAATAATTCAA‑GCAATTTTGTTTATCATAGGATTTAAAGATTCGGGGTCCTTATGGa                                                                                            <  2:574265/141‑1 (MQ=255)
                                               tatCAATGGAATATACATTGAATATAAACATATACGCTATGTCTTTAGTCTTTTATCGTGTATCTACTTGTCGATATGTTTGAATCATTCAA‑GCAATTTTGTTTATCATAGGATTTAAAGATTCGGGGTCCTTATGGatat                                                                                         >  1:517606/1‑141 (MQ=255)
                                                agcTATGGAACATACATTGAATATAAACATATACGCTATGTCTTTAGTCCTTTATCGTGTATCTACTTGTCGATATGTTTGAATAATTCAA‑GCAATTTTGTTTATCATAGGATTTAAAGATTCGGGGTCCTTATGGATATc                                                                                        <  1:20484/139‑1 (MQ=255)
                                                  cTATGGAATATACATTGAATATAAACATATACGCTATGTCTTTAGTCTTTTATCGTGTATCTACTTGTCGATATGTTTGAATAATTCAA‑GCAATTTTGTTTATCATAGGATTTAAAGATTCGGGGTCCTTATGGATATCat                                                                                      <  1:630879/141‑1 (MQ=255)
                                                    aTGGAATATACATTGAATATAAACATATACGCTATGTCTTTAGTCTTTTATCGTGTATCTACTTGTCGATATGTTTGAATAATTCAA‑GCAATTTTGTTTATCATAGGATTTAAAGATTCGGGGTCCTTATGGTTATCatat                                                                                    >  2:245488/1‑141 (MQ=255)
                                                     tGGACTATACATGGAATATAAACATATACGCTATGTCTTTAGTCTTTTATCGTGTATCTACGTGTCGATATGTTTGAACAATTCAA‑GCAATTTTGTTTATCATAGGATTTAAAGATTCGGGGTCCTTATGGATATCATAtt                                                                                   <  1:234872/141‑1 (MQ=255)
                                                         atatACATTGAATATAAACATATACGCTATGTCTTTAGTCTTTTATCGTGTATCTACTTGTCGATATGTTTGAATAATTCAA‑GCAATTTTGTTTATCATAGGATTTAAAGATTCGGGGTCCTTATGGATATCATATTCAtt                                                                               <  1:716622/141‑1 (MQ=255)
                                                           ataCATTGAATATAAACATATACGCTCTGTATTTAGTCTTTTCACGTGTATCTAACTGAAGAAACCTTTGTAAATTTGTATGCGGTAAGGTTT‑TCATAGGATTTAAACATGCTTGGTCCTAATGGATATCATATTCATTaa                                                                             >  2:752447/1‑141 (MQ=255)
                                                              cATTGAATATAAACATATACGCTATGTCTTTAGTCTTTTATCGTGTATCTACTTGTCGATATGTTTGAATAATTCAA‑GCAATTTTGTTTATCATAAGATTTAAAGATTCGGCGTCCTTATGCATATCATATTCAAGAatat                                                                          >  2:718127/1‑141 (MQ=255)
                                                                ttGAATATAAACATATACGCTATGTCTTTAGTCTTTTATCGTGTATCTACTTGTCGATATGTTTGAATAATTCAA‑GCAATTTTGTTTATCATAGGATTTAAAGATTCGGGGTCCTTATGGATATCATATTCATTAATATTg                                                                        >  1:73571/1‑141 (MQ=255)
                                                                ttGAATATAAACATATACGCTATGTCTTTAGTCTTTTATCGTGTATCTACTTGTCGATATGTTTGAATAATTCAA‑GCAATTTTGTTTATCATAGGATTTAAAGATTCGGGGTCCTTATGGATATCATATTCATTAATATTg                                                                        >  2:359693/1‑141 (MQ=255)
                                                                 tGAATATAAACATATACGCTATGTTTTTAGTCTTTTATCGTGTATCTACTTGTCGATATGTTTGAATAATTCAA‑GCAATTTTGTTTATCATAGGATTTAAAGATTCGGGGTCCTTATGGATATCATATTCATTAATATTGa                                                                       <  1:469455/141‑1 (MQ=255)
                                                                 tGAATATAAACATATACGCTATGTCTTTAGTCTTTTATCGTGTATCTACTTGTCGATATGTTTGAATAATTCAA‑GCAATTTTGTTTATCATAGGATTTAAAGATTCGGGGTCCTTATGGATATCATATTCATTAATATTGa                                                                       <  2:745953/141‑1 (MQ=255)
                                                                   aaTATAAACATATACGCTATGTCTTTAGTCTTTTATCGTGTATCTACTTGTCGATATGTTTGAATAATTCAA‑GCAATTTTGTTTATCATAGGATTTAAAGATTCGGGGTCCTTATGGATATCATATTCATTAATATTGATa                                                                     <  2:136632/141‑1 (MQ=255)
                                                                     tataAACATATACGCTATGTCTTTAGTCTTTTATCGTGTATCTACTTGTCGATATGTTTGGATAATTCAA‑GCAATTTTGTTTATCATAGGATTTAAAGATTCGGGGTCCTTATGGATATCATATTCATTAATATTGATACg                                                                   <  2:758507/141‑1 (MQ=255)
                                                                      ataAACATATACGCTATGTCTTTAGTCTTTTACCGTGTATCTACTTGTCGATATGTTTGAATGATTCAA‑GCAATTTTGTTTATCATAGGATTTAAAGATTCGGGGTCCTTATGGATATCATATTCATTAATATTGATACGt                                                                  >  1:544879/1‑141 (MQ=255)
                                                                        aaaCATATACGCTATGTCTTTAGTCTTTTATCGTGTATCTACTTGTCGATATGTTTGAATAATTCAA‑GCAATTTTGTTTATCATAGGATTTAAAGATTCGGGGTCCTTATGGATATCATATTCATTAATATTGATACGTAc                                                                <  1:295210/141‑1 (MQ=255)
                                                                         aaCATATACGCTATGTCTTTAGTCTTTTATCGTGTATCTACTTGTCGATATGTTTGAATAATTCAA‑GCAATTTTGTTTATCATAGGATTTAAAGATTCGGGGTCCTTATGGATATCATATTCATTAATATTGATACGTACa                                                               <  1:736984/141‑1 (MQ=255)
                                                                           cATATACGCTATGTCTTTAGTCTTTGATCGTGTATCTACTTGTCGATATGTTTGAATAATTCAA‑GCAATTTTGTTTATCATAGGATTTAAAGATTCGGGGTCCTTATGGATATCATATTCATTAATATTGATACGTACAAc                                                             <  1:575326/141‑1 (MQ=255)
                                                                              ataCGCTATGTCTTTAGTCTTTTATCGTGTATCTACTTGTCGATATGTTTGAATAATTCAA‑GCAATTTTGTTTATCATAGGATTTAAAGATTCGGGGTCCTTATGGATATCATATTCATTAATATTGATACGTACAACTgg                                                          <  1:23700/141‑1 (MQ=255)
                                                                                 cGCTATGTCTTTAGTCTTTTATCGTGTATCTACTTGTCGATATGTTTGAATAATTCAA‑GCAATTTTGTTTATCATAGGATTTAAATATTCGGGGTCCTTATGGATATCATATTCATTAATATTGATACGTACAACTGGACa                                                       <  2:179793/141‑1 (MQ=255)
                                                                                 cGCTATGTCTTTAGTCTTTTATCGTGTATCTACTTGTCGATATGTTTGAATAATTCAA‑GCAATTTTGTTTATCATAGGATTTAAAGATTCGGGGTCCTTATGGATATCATATTCATTAATATTGATACGTACaaatagcca                                                       <  2:576079/141‑8 (MQ=255)
                                                                                 cGCTATGTCTTTAGTCTTTTATCGTGTATCTACTTGTCGATATGTTTGAATAATTCAA‑GCAATTTTGTTTATCATAGGATTTAAAGATTCGGGGTCCTTATGGATATCATATTCATTAATATTGATACGTACAACTGGACa                                                       <  2:139447/141‑1 (MQ=255)
                                                                                 cGCTATGTCTTTAGTCTTTTATCGTGTATCTACTTGTCGATATGTTTGAATAATTCAA‑GCAATTTTGTTTATCATAGGATTTAAAGATTCGGGGTCCTTATGGATATCATATTCATTAATATTGATACGTACAACTGGACa                                                       <  1:427985/141‑1 (MQ=255)
                                                                                 cGCTATGTCTTTAGTCTTTTATCGTGTATCTACTTGTCGATATGTTTGAATAATTCAA‑GCAATTTTGTTTATCATAGGATTTAAAGATTCGGGGTCCTTATGGATATCATATTCATTAATATTGATACGTACAACTGGACa                                                       <  1:73056/141‑1 (MQ=255)
                                                                                 cGCTATGTCTTTAGTCTTTTATCGTGTATCTACTTGTCGATATGTTTGAATAATTCAA‑GCAATTTTGTTTATCATAGGATTTAAAGATTCGGGGTCCTTATGGATATCATATTCATTAATACTGATACGTACAACTGGACa                                                       <  1:566921/141‑1 (MQ=255)
                                                                                 cGCTATGTCTTTAGTCTTTTATCGTGTAACTACTTGTCGATATGTTTGAATAATTCAA‑GCAATTTTGTTTATCATAGGATTTAAAGATTCGGGGTCATTATGGATATCATATTCATTAATATTGATACGTACAACTGGACa                                                       <  1:429445/141‑1 (MQ=255)
                                                                                  gCTATGTCTTTAGTCTTTGATCTTGTATGTACTTGTCTATATGTTTGAATTATTCAA‑GCAATTTTGTTTATCATAGGATTTAAAGATTCGGGGTCCTTATGGATATCATATTCATTAATATTGATACGTACAACTGGACAt                                                      >  2:559281/1‑141 (MQ=255)
                                                                                   cTATGTCTTTAGTCTTTTATCGTGTATCTACTTGTCGATATGTTTGAATAATTCAA‑GCAATTTTGTTTATCATAGGATTTAAAGATTCGGGGTCCTTATGGATATCATATTCATTAATATTGATACGTACAACTGGACATg                                                     <  1:504414/141‑1 (MQ=255)
                                                                                           ttAGTCTTTTATCGTGTATCTACTCGTCGATATGTTTGAATAATTCAA‑GCAATTTTGTTTATCATAGGATTTAAAGATTCGGCGTCCTTATGGATATCATATTCATTAATATTGTTACGTACAACTGGACATGCATAAAAg                                             >  2:499846/1‑141 (MQ=255)
                                                                                            tAGTCTTTTATCGTGTATCTACTTGTCGATATGTTTGAATAATTCAA‑GCAATTTTGTTTATCATAGGATTTAAAGATTCGGGGTCCTTATGGATATCATATTCATTAATATTGATACGTACAACTGGACATGCATTAAAGc                                            >  2:674422/1‑141 (MQ=255)
                                                                                                 ttttATCGTGTATCTACTTGTCGATATGTTTGAATAATTCAA‑GCAATTTTGTTTATCATAGGATTTAAAGATTCGGGGGCCTTATGGATATCATATTCATTAATATTGATACGTACCACTGGACATGCATTAAAGCTATTa                                       >  2:475500/1‑141 (MQ=255)
                                                                                                   ttATCGTGTATCTACTTGTCGATATGTTTGAATAATTCAA‑GCAATTTTGTTTATCATAGGATTTAAAGATTCGGGGTCCTTATGGATATCATATTCATTAATATTGATACGTACAACTGGACCTGCATTCACGCTATTAAt                                     >  2:207967/1‑141 (MQ=255)
                                                                                                       cGTGTATCTACTTGTCGATATGTTTGAATAATTCAA‑GCAATTTTGTTTATCATAGGATTTAAAGATTCGGGGTCCTTATGGATATCATATTCATTAATATTGATACGTACAACTGGACATGCATTAAAGCTATTAATCCaa                                 >  2:358505/1‑141 (MQ=255)
                                                                                                        gtgtATCTACTTGTCGATATGTTTGAATAATTCAA‑GCAATTTTGTTTATCATAGGATTTAAAGATTCGGGGTCCTTATGGATATCATATTCATTAATATTGATACGTACAACTGGACATGCATTAAAGCTATTAATCCAAt                                >  1:641900/1‑141 (MQ=255)
                                                                                                        gtgtATCTACTTGTCGATATGTTTGAATAATTCAA‑GCAATTTTGTTTATCATAGGATTTAAAGATTCGGGGTCCTTATGGATATCATATTCATTAATATTGATACGCACACATGGACATGCATTCAAGCTATTAATCCAAt                                >  1:707421/1‑141 (MQ=255)
                                                                                                         ttgaTCTACTTGGGGATATGTATGAATAATTTAA‑GCAATTTTCTTTATCATAGGATTTAAAGAGTCGGGGTCCTTATTGATATCATATTCATTAATATTGATACGTACAACTGGACATGCATTAAAGCTATTAATCCAATc                               <  2:31710/138‑1 (MQ=255)
                                                                                                         tgtATCTACTTGTCGATATGTTTGAATAATTCAA‑GCAATTTTGTTTATCATAGGATTTAAAGATTCGGGGTCCTTATGGATATCATATTCATTAATATTGTTACGTACAACTGGACATGCATTAAAGCTATTAATCCAATc                               >  2:5263/1‑141 (MQ=255)
                                                                                                          gtATCTACTTGTCGATATGTTTGAATAATTCAA‑GCAATTTTGTTTATCATAGGATTTAAAGATTCGGGGTCCTTATGGATATCATATTCATTAATATTGATACGTACAACTGGACATGCATTAAAGCTATTAATCCAATCg                              >  1:742031/1‑141 (MQ=255)
                                                                                                          gtATCTACTTGTCGATATGTTTGAATAATTCAA‑GCAATTTTGTTTATCATAGGATTTAAAGATTCGGGGTCCTTATGGATATCATATTCATTAATATTGATACGTACAACTGGACATGCATTAAAGCTATTAATCCAATCg                              <  2:142074/141‑1 (MQ=255)
                                                                                                               tACTTGTCGATATGTTTGAATAATTCAA‑GCAATTTTGTTTATCATAGGATTTAAAGATTCGGGGTCCTTATGGATATCATATTCATTAATATTGATACGTACAACTGGACATGCATTAAAGCTATTAATCCAATCGTCATa                         <  2:649956/141‑1 (MQ=255)
                                                                                                                aCTTGTCGATATGTTTGAATAATTCAA‑GCAATTTTGTTTATTATAGGATTTAAAGATTCGGGGTCCTTATGGATATCATATTCATTAATATTGATACGTACAACTGGACATGCATTAAAGCTATTAATCCAATCGTCATAg                        <  1:127493/141‑1 (MQ=255)
                                                                                                                aCTTGTCGATATGTTTGAATAATTCAA‑GCAATTTTGTTTATCATAGGATTTAAAGATTCGGGGTCCTTATGGATATCATATTCATTAATATTGATACGTCCAGCTGGACATGCATTAAAGCTATTAATCCAATCGTCATAg                        >  1:139061/1‑141 (MQ=255)
                                                                                                                    gTCGATATGTTTGAATAATTCAA‑GCAATTTTGTTTATCATAGGATTTAAAGATTCGGGGTCCTTATGGATATCATATTCATTAATATTGATACGTACAACTGGACATGCATTAAAGCTATTAATCCAATCGTCATAGCGtt                    <  1:197279/141‑1 (MQ=255)
                                                                                                                    gTCGATATGTTTGAATAATTCAA‑GCAATTTTGTTTATCATAGGATTTAAAGATTCGGGGTCCTTATGGATATCATATTCATTAATATTGATACGTACAACTGGACATGCATTAAAGCTATTAATCCAATCGTCATAGCGtt                    >  2:381873/1‑141 (MQ=255)
                                                                                                                       gATATGTTTGAATAATTCAA‑GCAATTTTGTTTATCATAGGATTTAAAGATTCGGGGTCCTTATGGATATCATATTCATTAATATTGATACGTACAACTGGACATGCATTAAAGCTATTAATCCAATCGTCATAGCGTTTaa                 <  2:17032/141‑1 (MQ=255)
                                                                                                                           tGTTTGAATAATTCAA‑GCAATTTTGTTTATCATAGGATTTAAAGATTCGGGGTCCTTATGGATATCATATTCATTAATATTGATACGTACAACTGGGCATGCATTAAATCTATTAATCCAACCGCGATAGGGTTTACATAg             >  2:620842/1‑141 (MQ=255)
                                                                                                                           tGTTTGAACAATTCAA‑GCAATTTTGTTTATCATAGGATTTAAATATTCGGGGTCCTTATGGATATCATATTCATTAATATTGATACGTACAACTGGACATGCATTAAAGCTATTAATCCAATCGTCATAGCGTTTAAATAg             <  1:483447/141‑1 (MQ=255)
                                                                                                                             tttGAATAATTCAA‑GCAATTTTGTTTATCATAGGATTTAAAGATTCGGGGTGCTTATGGATATCATATTCATTAATATTGATACGTACAACTGGACATGCATTAAAGCTATTAATTCAATCGGCATAGTGTTTCAATAGCt           >  2:741141/1‑141 (MQ=255)
                                                                                                                                 aataatTCAA‑GCAATTTTGTTTATCATAGGATTTAAAGATTCGGGGTCCTTATGGATATCATATTCATTAATATTGATACGTACAACTGGACATGCATTAAAGCTATTAATCCAATCGTCATAGCGTTTAAATAGCttttt       <  2:73571/141‑1 (MQ=255)
                                                                                                                                      ttCAA‑GCAATTTTGTTTATCATAGGATTTAAAGATTCGGGGTCCTTATGGATATCATATTCATTAATATTGATACGTACAACTGGACATGCATTAAAGCTATTAATCCAATCGTCATAGCGTTTAAATAGCTTTTTCCAGt  <  1:602598/141‑1 (MQ=255)
                                                                                                                                         |                                                                                                                                          
TATATGTGAATTAATGTATTCGATAGAATTGATAAAATAATCGATAATATCTATGGAATATACATTGAATATAAACATATACGCTATGTCTTTAGTCTTTTATCGTGTATCTACTTGTCGATATGTTTGAATAATTCGA‑GCAATTTTGTTTATCATAGGATTTAAAGATTCGGGGTCCTTATGGATATCATATTCATTAATATTGATACGTACAACTGGACATGCATTAAAGCTATTAATCCAATCGTCATAGCGTTTAAATAGCTTTTTCCAGT  >  CP000730/607747‑608021

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A