Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A3 F67 I1 R1 13 62.5 1286300 92.5% 1189827 135.5

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA CP000730 36,378 C→T L58L (TTG→TTA)  tpn ← IS431mec transposase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP00073036,3780CT86.4% 1839.3 / 270.3 862L58L (TTG→TTA) tpnIS431mec transposase
Reads supporting (aligned to +/- strand):  ref base C (45/72);  new base T (351/393);  total (396/466)
Fisher's exact test for biased strand distribution p-value = 8.98e-02
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 862 total aligned reads displayed.

GCAACCAAATATCTAATGTATGTCCCTCTGCATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGC‑TTTTTTATGCTTTTTCTTCCAAATTTGATACAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTACACCACGTTCCCTTAATATTTCAGATATATCACGATAACTCAATGTATATCTTAGATAGTAGCCAACGGCTACAGTGATAACAT  >  CP000730/36239‑36517
                                                                                                                                            |                                                                                                                                           
gCAACCAAATATCTAATGTATGTCCCTCTGCATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATGTTCGTCTCATCAATACGCCATTTGTAATAAGC‑TTTTTTATGCTTTTTCTTCCAAATTTGATACa                                                                                                                                            <  1:623869/141‑1 (MQ=255)
 cAACCAAATATCTAATGTATGTCCCTCTGCATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGC‑TTTTTTATGCTTTTTCTTCCAAATTTGATATaa                                                                                                                                           >  1:424350/1‑141 (MQ=38)
    ccAAATATCTAATGTATGTCCCTCTGTATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGT‑TTTTTTATGCTTTTTCTTCATAATTTGATTTAAAAt                                                                                                                                        >  1:182560/1‑141 (MQ=11)
     cAAATATCTAATGTATGTCCCTCTGTATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGC‑TTTTTTATGCTTTTTCTTCCAAATTTGATATAAAAtt                                                                                                                                       >  1:497902/1‑141 (MQ=255)
     cAAATATCTAATGTATGTCCCTCTGTATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGC‑TTTTTTATGCTTTTTCTTCCAAATTTGATATAAAAtt                                                                                                                                       >  1:280528/1‑141 (MQ=255)
         tatCTAATGTATGTCCCTCTGTATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGC‑TTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTgggg                                                                                                                                   <  1:368948/141‑1 (MQ=255)
           tCTAATGTATGTCCCTCTGTATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGC‑TTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCa                                                                                                                                 >  1:31810/1‑141 (MQ=255)
           tCTAATGTATGTCCCTCTGTATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGC‑TTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCa                                                                                                                                 >  2:403847/1‑141 (MQ=255)
           tCTAATGTATGTCCCTCTGTATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGC‑TTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCa                                                                                                                                 >  1:68500/1‑141 (MQ=255)
           tCTAATGTATGTCCCTCTGTATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGC‑TTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCa                                                                                                                                 >  1:247543/1‑141 (MQ=255)
           tCTAATGTATGTCCCTCTGTATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGC‑TTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCa                                                                                                                                 >  2:574267/1‑141 (MQ=255)
             tAATGTATGTCCCTCTGTATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGC‑TTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCata                                                                                                                               <  2:559807/141‑1 (MQ=255)
              aaTGTATGTCCCTCTGTATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGC‑TTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCatat                                                                                                                              >  1:143592/1‑141 (MQ=255)
              aaTGTATGTCCCTCTGCATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGC‑TTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCatat                                                                                                                              <  2:28476/141‑1 (MQ=38)
              aaTGTATGTCCCTCTGCATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGC‑TTTTTTATGCTTTTTCTTCCAAATTTGATACAAAATTGGGGCatat                                                                                                                              <  1:474992/141‑1 (MQ=255)
              aaTGTATGTCCCTCTGCATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGC‑TTTTTTATGCTTTTTCTTCCAAATTTGATACAAAATTGGGGCatat                                                                                                                              <  2:582525/141‑1 (MQ=255)
               atgtatgtCCCTCTGTATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGC‑TTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATAtt                                                                                                                             <  2:533006/141‑1 (MQ=255)
               atgtatgtCCCTCTGTATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGC‑TTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATAtt                                                                                                                             >  1:435521/1‑141 (MQ=255)
               atgtatgtCCCTCTGTATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGC‑TTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATAtt                                                                                                                             >  1:396247/1‑141 (MQ=255)
                 gtatgtCCCTCTGTATCAATGGCACGATATAAATAGCTCCATTCTCCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGC‑TTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCt                                                                                                                           <  2:414121/141‑1 (MQ=11)
                   atgtCCCTCTGTATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGC‑TTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTg                                                                                                                         <  1:598090/141‑1 (MQ=255)
                    tgtCCCTCTGTATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGC‑TTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGa                                                                                                                        >  1:635602/1‑141 (MQ=255)
                     gtCCCTCTGTATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGC‑TTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGaa                                                                                                                       <  2:550925/141‑1 (MQ=255)
                     gtCCCTCTGTATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGC‑TTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGaa                                                                                                                       <  2:15804/141‑1 (MQ=255)
                     gtCCCTCTGTATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGC‑TTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGaa                                                                                                                       <  1:53760/141‑1 (MQ=255)
                     gtCCCTCTGCATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGC‑TTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGaa                                                                                                                       >  2:102353/1‑141 (MQ=25)
                      tCCCTCTGTATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGC‑TTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGCGCATATTCTTGAAc                                                                                                                      >  2:71968/1‑141 (MQ=255)
                      tCCCTCTGTATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGC‑TTTTTTATGCTTTTTCTTACAAATTTGATATAAAATTGGGGCATATTCTTGAAc                                                                                                                      >  2:617434/1‑141 (MQ=255)
                       cccTCTGTATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGC‑TTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAAcc                                                                                                                     <  2:601243/141‑1 (MQ=255)
                           ctGCATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATGTACGGCTCATCAATACGCCATTTGTAATAAGC‑TTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAAc                                                                                                                 <  1:100290/141‑1 (MQ=21)
                             gtaTCAATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGC‑TTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACgg                                                                                                               <  1:530195/139‑1 (MQ=255)
                             gCATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGC‑TTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACgg                                                                                                               <  2:638206/141‑1 (MQ=21)
                               aTCAATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGC‑TTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTa                                                                                                             <  1:335143/141‑1 (MQ=21)
                               aTCAATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGC‑TTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTa                                                                                                             >  1:270386/1‑141 (MQ=19)
                                tCAATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTTATGCTTTTTCTTCCAAATTTGATACAAAATTGGGGCATATTCTTGAACCCAACGGTa                                                                                                             <  1:377506/141‑1 (MQ=255)
                                tCAATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGC‑TTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAg                                                                                                            <  1:7895/141‑1 (MQ=21)
                                tCAATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGC‑TTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAg                                                                                                            <  1:131553/141‑1 (MQ=19)
                                  aaTGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGC‑TTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGat                                                                                                          <  2:320403/141‑2 (MQ=19)
                                  aaTGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGC‑TTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGat                                                                                                          >  1:20056/1‑140 (MQ=255)
                                   aTGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGC‑TTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGAcc                                                                                                         >  2:147156/1‑141 (MQ=25)
                                    tGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGC‑TTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCg                                                                                                        >  1:575908/1‑141 (MQ=21)
                                     ggCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGC‑TTTTTTATGCTTTTTCTTCCAAATTTGATACAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGt                                                                                                       <  2:518545/141‑1 (MQ=40)
                                      gCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGC‑TTTTTTATGCTTTTTCTTCCAAATTTGATACAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGtt                                                                                                      <  2:350131/141‑1 (MQ=40)
                                       cACGATATAAATAGCTCCATTTTCCTTTTATTTTGATATACGTCTCATCAATACCACATATGGAATAAGC‑TTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTg                                                                                                     <  1:305177/141‑1 (MQ=11)
                                           atatAAATAGCTCCATTTTCCTTTTATTTTGATATACGTATCATCAATACGCCATTTGTAATAAGC‑TTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAatg                                                                                                 <  2:90779/141‑1 (MQ=255)
                                            tataAATAGCTCCATTTTCCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGC‑TTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAatga                                                                                                <  2:507198/141‑1 (MQ=255)
                                             ataAATAGCTCCATTTTCCTTTTATTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGC‑TTTTTTATGCTTTTTCTTCCAAATTTGATACAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAatgat                                                                                               >  1:89364/1‑141 (MQ=40)
                                             ataAATAGCTCCATTTTCCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGC‑TTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAatgat                                                                                               <  2:207536/141‑1 (MQ=255)
                                                aaTAGCTCCATTTTCCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGC‑TTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCat                                                                                                                                >  2:263233/1‑105 (MQ=255)
                                                aaTAGCTCCATTTTCCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGC‑TTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCat                                                                                                                                <  1:263233/105‑1 (MQ=255)
                                                aaTAGCTCCATTTTCCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGC‑TTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGaa                                                                                            <  1:548178/141‑1 (MQ=255)
                                                aaTAGCTCCATTTTCCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGC‑TTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGaa                                                                                            <  2:270751/141‑1 (MQ=255)
                                                    gCTCCATTTTCCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGC‑TTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAACGtt                                                                                        >  2:183933/1‑141 (MQ=255)
                                                      tCCATTTTCCTTTTATTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGC‑TTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTa                                                                                      >  1:559020/1‑141 (MQ=21)
                                                        cATTTTCCTTTTATTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGC‑TTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTaca                                                                                    >  2:231214/1‑141 (MQ=21)
                                                          ttttCCTTTTATTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGC‑TTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTAcacc                                                                                  >  1:467447/1‑141 (MQ=21)
                                                          ttttCCTTTTATTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGC‑TTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTAcacc                                                                                  >  2:626010/1‑141 (MQ=21)
                                                          ttttCCTTTTATTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGC‑TTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGAGGAATATTAATGAACCCTACGATAAAACGTGGAATGATGAATGTTTacact                                                                                  >  1:125534/1‑140 (MQ=11)
                                                            ttCCTTTTATTTTGATATACGTCGCATCAATACGCCATTTGGAAGATTC‑TTCTTGATGCTTTTGCGTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAACGTTTAcaccac                                                                                <  1:59374/141‑1 (MQ=11)
                                                             tCCTTTTATTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGC‑TTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTACACCACg                                                                               <  2:112363/141‑1 (MQ=21)
                                                              ccTTTTATTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGC‑TTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTACACCACGt                                                                              >  1:237457/1‑141 (MQ=21)
                                                                ttttATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGC‑TTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAACGTTTACACCACGTTc                                                                            >  2:456666/1‑141 (MQ=255)
                                                                    aTTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGC‑TTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTACACCACGTTCCCtt                                                                        <  2:422687/141‑1 (MQ=18)
                                                                    aTTTTGATGTACGTCTCATCAATACACCATTTGTCATAAGC‑TTTTTTATTCTTTTTCTTCCAAAGTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTACACCACGTTCCCtt                                                                        <  1:293415/141‑1 (MQ=11)
                                                                    aTTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGC‑TTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAACGTTTACACCACGTTCTCtt                                                                        <  2:384080/141‑1 (MQ=11)
                                                                      tttGATGTACGTCTCATCAATACGCCATTTGTAATAAGC‑TTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTACACCACGTTCCCTTaa                                                                      <  2:333562/141‑1 (MQ=21)
                                                                      tttGATATACGTCTCATCAATACGCCATTTGTAATAAGC‑TTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAACGTTTACACCACGTTCTCTTaa                                                                      <  2:596088/141‑1 (MQ=11)
                                                                      tttGATATACGTCTCATCAATACGCCATTTGTAATAAGC‑TTTTTTATGCTTGTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGATCCCAACGGTAGATCGTTGAATGATGAACGTTTACACCACGTTCTCTTaa                                                                      <  2:122539/141‑1 (MQ=11)
                                                                       ttGATGTACGTCTCATCAATACGCCATTTGTAATAAGC‑TTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTACACCACGTTCCCTTAat                                                                     >  2:300782/1‑141 (MQ=25)
                                                                         gatatACGTCTCATCAATACGCCATTTGTAATAAGC‑TTTGTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAACGTTTACACCACGTTCTCTTAatat                                                                   >  2:193088/5‑141 (MQ=11)
                                                                           tatACGTCTCATCAATACGCCATTTGTAATAAGC‑TTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATAttt                                                                 <  2:87647/139‑1 (MQ=255)
                                                                           tatACATCTCATCAATACGCCATTTGTAATAAGC‑TTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATAttt                                                                 <  2:441471/139‑1 (MQ=11)
                                                                             tACGTCTCATCAATACGCCATTTGTAATAAGC‑TTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCa                                                               <  1:519448/141‑1 (MQ=255)
                                                                             tACGTCTCATCAATACGCCATTTGTAATAAGC‑TTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCa                                                               <  2:294754/141‑1 (MQ=255)
                                                                                gTCTCATCAATACGCCATTTGTAATAAGC‑TTTTTTATGCTTTTTCTTCCAAATTTGATACAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTACACCACGTTCCCTTAATATTTCAGat                                                            <  2:469957/141‑1 (MQ=40)
                                                                                gTCTCATCAATACGCCATTTGTAATAAGC‑TTTTTTATGCTTTTTCTTCCAAATTTGATACAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTACACCACGTTCCCTTAATATTTCAGat                                                            <  1:172082/141‑1 (MQ=40)
                                                                                 tctcATCAATACGCCATTTGTAATAAGC‑TTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGata                                                           <  2:249039/141‑1 (MQ=255)
                                                                                   tcatcaATACGCCATTTGTAATAAGC‑TTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGatata                                                         <  1:458082/141‑1 (MQ=255)
                                                                                   tcatcaATACGCCATTTGTAATAAGC‑TTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGatata                                                         <  2:435521/141‑1 (MQ=255)
                                                                                   tcatcaATACGCCATTTGTAATAAGC‑TTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTACACCACGTTCCCTTAATATTTCAGatata                                                         <  1:484895/141‑1 (MQ=21)
                                                                                      tcaATACGCCATTTGTAATAAGC‑TTTTTTTTGCTTTTTCTTCCAAATTTGATACAAAATTGGTGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTACACCACGTTCCCTTAATATTTCAGATATATCa                                                      <  2:539410/141‑1 (MQ=255)
                                                                                       caATACGCCATTTGTAATAAGC‑TTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCAc                                                     >  1:351793/1‑141 (MQ=255)
                                                                                       caATACGCCATTTGTAATAAGC‑TTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTACACCACGTTCCCTTAATATTTCAGATATATCAc                                                     >  1:111229/1‑141 (MQ=21)
                                                                                        aaTACGCCATTTGTAATAAGC‑TTTTTTATGCTTTTTCTTCCAAATTTGATACAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTACACCACGTTCCCTTAATATTTCAGATATATCACg                                                    <  1:217097/141‑1 (MQ=40)
                                                                                         aTACGCCATTTGTAATAAGC‑TTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGa                                                   <  2:486167/141‑1 (MQ=255)
                                                                                         aTACGCCATTTGTAATAAGC‑TTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGa                                                   >  2:241466/1‑141 (MQ=255)
                                                                                          tACGCCATTTGTAATAAGC‑TTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGa                                                   >  1:615537/1‑140 (MQ=255)
                                                                                          tACGCCATTTGTAATAAGC‑TTTTTTATGCTTTTTCTTCCAAATTTGATACAAAATCGGGGCCTTTTCTTGAACCCAACGGTAGTCCGTTTAATTATGAACGTTTACACCACGTTCCCTTAATATTTCAGATATATCACGAt                                                  >  1:510592/1‑141 (MQ=14)
                                                                                              ccATTTGTAATAAGC‑TTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTACACCACGTTCCCTTAATATTTCAGATATATCACGATAACt                                              >  1:411478/1‑141 (MQ=21)
                                                                                               cATTTGTAATAAGC‑TTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTc                                             <  2:494290/141‑1 (MQ=11)
                                                                                                aTTTGTAATAAGC‑TTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCa                                            >  2:168071/1‑141 (MQ=11)
                                                                                                 tttGTAATAAGC‑TTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCaa                                           >  2:369678/1‑141 (MQ=11)
                                                                                                 tttGTAATAAGC‑TTTTTTATGCTTTTTCTTCCAAATTTGATACAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTACACCACGTTCCCTTAATATTTCAGATATATCACGATAACTCaa                                           <  1:56640/141‑1 (MQ=40)
                                                                                                   tGTAATAAGC‑TTTTTTATGCTTTTTCTTCCAAATTTGATACAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTACACCACGTTCCCTTAATATTTCAGCTATATCACGATAACTCAATg                                         <  2:132940/141‑1 (MQ=255)
                                                                                                     taataaGC‑TTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATgca                                       <  1:155283/141‑3 (MQ=11)
                                                                                                     taataaGC‑TTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATgca                                       <  2:221066/141‑3 (MQ=11)
                                                                                                      aataaGC‑TTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTACACCACGTTCCCTTa                                                                       >  2:395630/1‑108 (MQ=18)
                                                                                                                              ttcCAAATTTGATACAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTACACCACGTTCCCTTAATATTTCAGATATATCACGATAACTCAATGTATATCTTAGATAGTAGCCAACGGCt               <  1:229582/141‑1 (MQ=35)
                                                                                                                                   aaTTTGATACAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTACACCACGTTCCCTTAATATTTCAGATATATCACGATAACTCAATGTATATCTTAGATAGTAGCCAACGGCTACAGt          <  1:607897/141‑1 (MQ=35)
                                                                                                                                           aCAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTACACCACGTTCCCTTAATATTTCAGATATATCACGATAACTCAATGTATATCTTAGATAGTAGCCAACGGCTACAGTGATAACAt  >  2:174631/1‑141 (MQ=34)
                                                                                                                                            |                                                                                                                                           
GCAACCAAATATCTAATGTATGTCCCTCTGCATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGC‑TTTTTTATGCTTTTTCTTCCAAATTTGATACAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTACACCACGTTCCCTTAATATTTCAGATATATCACGATAACTCAATGTATATCTTAGATAGTAGCCAACGGCTACAGTGATAACAT  >  CP000730/36239‑36517

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A