Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A15 F18 I1 R1
|
22 |
189.8 |
4020594 |
92.3% |
3711008 |
148.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
CP000730 |
36,378 |
C→T |
L58L (TTG→TTA) |
tpn ← |
IS431mec transposase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | CP000730 | 36,378 | 0 | C | T | 93.3%
| 7020.2
/ inf
| 3366 | L58L (TTG→TTA) | tpn | IS431mec transposase |
| Reads supporting (aligned to +/- strand): ref base C (110/115); new base T (1572/1543); total (1702/1664) |
| Fisher's exact test for biased strand distribution p-value = 6.79e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 3368 total aligned reads displayed.
GTTGCTTACGCAACCAAATATCTAATGTATGTCCCTCTGCATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCT‑TCCAAATTTGATACAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTACACCACGTTCCCTTAATATTTCAGATATATCACGATAACTCAATGTATATCTTAGATAGTAGCCAACGGCTACAGTGATAACATCCTTGTTAA > CP000730/36230‑36526
|
ttACGCAACCAAATATCTAATGTATGTCCCTCTGTATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATATACGTCTAATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCT‑TCCAAATTTGATATAAAAt > 2:1898993/1‑149 (MQ=255)
aCGCAACCAATTATCTAATGTATGTCCCTCTGTATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCT‑TCCAAATTTGATATAAAATTg < 1:254880/149‑1 (MQ=255)
aCGCAACCAAATATCTAATGTATGTCCCTCTGTATCGATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATATACGTCTCATCAATACGCCATTTCTAATAAGCTTTTTTATGCTTTCTCT‑TCCAAATTTGATATAAAATTg < 1:1111278/149‑1 (MQ=11)
aCGCAACCAAATATCTAATGTATGTCCCTCTGCATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCT‑TCCAAATTTGATATAAAATTg < 1:647721/149‑1 (MQ=37)
cGCAACCAAATATCTAATGTATGTTCCTCTGTATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCT‑TCCAAATTTGATATAAAATTgg < 2:253092/149‑1 (MQ=255)
gCAACCAAATATCTAATGTATGTCCCTCTGCATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGTTTTACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCT‑TCCGAATTTGTTATAAACTTggg > 1:988144/1‑149 (MQ=11)
cAACCAAATATCTAATGTATGTCCCTCTGCATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCT‑TCCAAATTTGATATAAAATTgggg < 1:786575/149‑1 (MQ=37)
aCCAAATATCTAATGTATGTCCCTCTGCATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCT‑TCCAAATTTGATATAAAATTGGGGCa < 1:1828381/149‑1 (MQ=37)
ccAAATATCTAATTTATGTCCCTCTGTATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCT‑TCCAAATTTGATATAAAATTGGGGCat < 2:795233/149‑1 (MQ=255)
aatatacaaTGTATGTCCCTCTGTATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCT‑TCCAAATTTGATATAAAATTGGGGCATAtt < 2:973320/142‑1 (MQ=11)
aaTATCTAATGTATGTCCCTCTGTATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTATTAAGCTTTTTTATGCTTTTTCT‑TCCAAATTTGATATAAAATTGGGGAATAtt > 1:918970/1‑149 (MQ=11)
atatCTAATGTATGTCCCTCTGCATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCT‑TCCAAAGTTGATATAAAATTGGGGCATATTc > 1:1225414/1‑149 (MQ=255)
tatCTAATGTTTGTCCCTCTGTATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCT‑TCCAAATCTGCTATAAAATTGTGGCATATTCt < 2:677746/149‑1 (MQ=11)
tatCTAATGTATGTCCCTCTGTATCAATGTCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCT‑TCCAAATTTGATATAAAATTGGGGCATATTCt < 1:1157317/149‑1 (MQ=255)
atggtagttCCCTCTGTATCAATGGCAAGACATTAATATCCCCACTTTCCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCT‑TCCAAATTTGATATAAAATTGGGGCATATTCTTGAAc < 1:1542800/141‑1 (MQ=11)
atgtatgtCCCTCTGTATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCT‑TCCAAATTTGATATAAAATTGGGGCATATTCTTGAAcc > 2:155487/1‑149 (MQ=255)
atgtatgtCCCTCTGCATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCT‑TCCAAATTTGATATAAAATTGGGGCATATTCTTTAAcc > 2:1392004/1‑149 (MQ=255)
tgtatgtCCCTCTGTATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCT‑TCCAAATTTGATATAAAATTGGGGGCTTTTCTTGAAccc > 1:679771/1‑149 (MQ=11)
tatgtCCCTCTGCATCAATGTCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCT‑TCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCaa > 2:1731418/1‑149 (MQ=255)
gtCCCTCTGTATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCT‑TCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACgg > 1:316096/1‑149 (MQ=255)
gtCCCTCTGTATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCT‑TCCAAATTTGATATAAAATTCGGGCATATTCTTTAACCCAACgg > 2:1699142/1‑149 (MQ=11)
tcgctctGTATCTATGTCACGATATAAATAGCGCCATTTTCCTTTTATTTTGATATACGTCGCATCAATACGCCATTTGTAATAAGCTTGTTTATGATTTTTTTATACAAGTTTTA‑AAAAAGTTGGGGCATATTCTTGAACCCacaggt > 2:904419/4‑144 (MQ=2)
tCCCTCTGTATCAATGGCACGATAGAAATAGCTCCATTTTCCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCT‑TCTAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGt > 1:1186167/1‑149 (MQ=11)
tCCCTCTGCATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCT‑TCCAAATTTGATACAAAATTGGGGCATATTCTTGAACCCAACGGt > 2:1759604/1‑149 (MQ=40)
tCCCGCTGTATCAATGGCACGATATAAATGGCTCCATTTTCCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCT‑TCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGt < 2:1236188/149‑1 (MQ=11)
cccTCTACATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCT‑TCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTa > 2:1154623/1‑149 (MQ=19)
tctGTATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCT‑TCCAAATTTGATCTAAAATTGGGGCTTATTCTTTCACCCAAGGGTAgtt > 2:127118/1‑147 (MQ=11)
tctGTATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCT‑TCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGat < 1:287345/149‑2 (MQ=255)
tgtaTCAATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCT‑TCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCg < 1:444764/146‑1 (MQ=255)
gtaTCAATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCT‑TCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGt < 1:1677448/147‑1 (MQ=255)
tCAATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCT‑TCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGa > 2:1427637/1‑149 (MQ=25)
tCAATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCT‑TCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGa < 1:1751255/149‑1 (MQ=255)
cactGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATGTCCGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCT‑TCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGaa < 1:1906720/146‑1 (MQ=255)
cAATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCT‑TCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGaa > 1:1354371/1‑149 (MQ=25)
cAATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCT‑TCCAAATTTGATATAAAATTgggg < 2:357510/117‑1 (MQ=255)
cAATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCT‑TCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGaa > 2:1349373/1‑149 (MQ=255)
cAATGGCACGATACAAATAGCTCCATTTTCCTTTTATTTTGATGTACGTCTCATCTATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCT‑TCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGaa < 1:586472/149‑1 (MQ=255)
gCACGATATAAATAGCTCCCTTTTCCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCT‑TCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAatgatg < 1:1646807/149‑1 (MQ=255)
cACGACATAAATAGCTCCATCTTCCCTTCGTTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCT‑TCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAAtgatga < 2:641620/149‑1 (MQ=11)
aCGATATAAATAGCTCCATTTTCCTTTTATTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCT‑TCCAAATTTGATACAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGaa < 1:1983583/149‑1 (MQ=40)
aCGATATAAATAGCTCCATTTTCCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCT‑TCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGaa < 1:1939603/149‑1 (MQ=255)
cGATATAAATAGCTCCATTTTCCTTTTATTTTGCAGAACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCT‑TCCAAATTTGATATAAAATTGGGGAATATTCTTGAACCCACAGGTAGACCGTTGAATGGTGAAc > 2:430990/1‑149 (MQ=11)
ttataAATAGCTCCATTTTCCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCT‑TCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAACGt < 2:1061949/148‑1 (MQ=255)
atatAAATAGCTCCATTTTCCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCT‑TCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAACGt < 2:1195153/149‑1 (MQ=255)
atatAAATAGCTCCATTTTCCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCT‑TCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAACGt < 2:939308/149‑1 (MQ=255)
ataAATAGCCCCATTTTCCTTTTATTTTGATATACGTCTCATCAATACTCCATTTGTAATAAGCTTTTTTATGCTTTTTCT‑TCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAACGttt < 2:469027/149‑1 (MQ=11)
aGCTCCATTTTCCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCT‑TCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAACGTTTAcacca < 1:1576610/149‑1 (MQ=255)
aGCTCCATTTTCCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCT‑TCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAAAGGTAGATCGTTGAATGATGAACGTTTAcacca < 2:722074/149‑1 (MQ=255)
cTCCATTTTCCTTTTATTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCT‑TCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTACACCACg > 1:1002639/1‑149 (MQ=25)
cTCCATTTTCCTTTTATCTTGATGTACGTCTCATCAATACGCCATTTGTAATCAGCTATTGTTGGCTTTTTCT‑TCACACTCTGATACAAAATTGGGGCATATTCTGTAACCCAACATTATACCGTTGAATAATGAACGGTTACACCACg > 1:1463478/1‑149 (MQ=11)
tCCATTTTCCTTTTATTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCT‑TCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTACACCCCGt > 2:5500/1‑149 (MQ=25)
tCCATTTTCCTTTTATTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCT‑TCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTACACCACGt > 1:215341/1‑149 (MQ=25)
tCCATTTTCCTTTTATTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCT‑TCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTACACCACGt > 1:12529/1‑149 (MQ=21)
ccATTTTCCTTTTATTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCT‑TCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTACACCACGtt > 2:518258/1‑149 (MQ=21)
ccATTTTCCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCT‑TCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAACGTTTACACCACGtt > 2:186653/1‑149 (MQ=255)
cATTTTCCTTTTATTTTGATCTACGCCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCT‑TCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAACGTTTACACCACGTTc < 2:1100733/149‑1 (MQ=255)
cATTTTCCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCT‑TCCAACTTTGATATAAAATTGGGGCCTATTCTTGAACCCCATGGCCGATCGTTGAATGATGAACGtggtgtaaacgtcc < 1:1389056/149‑14 (MQ=11)
cttttCCTTTTATTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCT‑TCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTACACCACGTTcc < 2:1829804/148‑1 (MQ=21)
cttgtCCTTTTATTTTGATGGTCGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCT‑TCCAAATTTGCTACAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTACACCACGTTcc < 2:326610/145‑1 (MQ=255)
ttttCCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCT‑TCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAACGTTTACACCACGTTctc < 1:553530/149‑3 (MQ=255)
tttCCTTTTATTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGTTTTTTCC‑GCCAAATTTGATACAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTACACCACGTTCCCt < 1:952764/149‑1 (MQ=255)
tttCCTTTTATTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCT‑TCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTACACCACGTTCCCt < 2:1976643/149‑1 (MQ=21)
tCCTTTTATTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCT‑TCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTACACCACGTTCCCTTa < 2:2113/149‑1 (MQ=21)
tCCTTTTATTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCT‑TCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTACACCACGTTCCCTTa < 2:864558/149‑1 (MQ=21)
tCCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCT‑TCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAACGTTTACACCACGTTCTCTTa < 1:386817/149‑1 (MQ=11)
cTTTTATTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCT‑TCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTACACCACGTTCCCTTAat < 1:1792617/149‑1 (MQ=21)
tttATTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCT‑TCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTACACCACGTTCCCTTAatat > 1:891752/1‑149 (MQ=21)
tttATTTTGATATAAGGCTCATCAATACGCCATTTGTAATAAGATTTTTTATGCTTTTTCT‑TCCAAGATTGGTATAAAATTGGGGCATATTCGTGAACCCAACGGTAGCTCGTTGAATGATGAATGTTTAGACCACGTTCTCTTTatat > 2:1533081/1‑149 (MQ=11)
aTTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCT‑TCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTACACCACGTTCCCTTACTATTTc > 1:616385/1‑149 (MQ=25)
aTTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCT‑TCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTc < 2:1498413/149‑1 (MQ=255)
tttGCTATACGTCTCATCAATACGCCATTTGTAATAAGATTTGTGATTCTTTTTCT‑TCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAg < 1:1037661/149‑1 (MQ=11)
tttGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCT‑TCCAAATTTGATATAAAATTGGGGCATATTCTTGAGCCCAACGGTAGATCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAg < 1:34720/149‑1 (MQ=11)
tttGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCT‑TCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAg > 2:1585696/1‑149 (MQ=255)
ttGATGTACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCT‑TCCAAATTTGATATAAAATTGGGGCATATTCTTGaa < 2:1321861/91‑1 (MQ=255)
ttGATATACGGCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCT‑TCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGa < 1:1509482/149‑1 (MQ=11)
tGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCT‑TCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAACGTTTACACCACATTCTCTTAATATTTCAGat < 2:754991/149‑1 (MQ=11)
gATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCT‑TCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAATGTTTACACTACGTTTTCTTAATATTTCAGata > 2:597621/1‑149 (MQ=11)
gATATACGTCTCATCAATACGCCATTTGAAATAAGCTTTTTTATGCTTTTTCT‑TCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGata < 2:1795376/149‑1 (MQ=11)
atatACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCT‑TCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGatat > 2:1662974/4‑149 (MQ=255)
tatACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCT‑TCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGatata > 2:298364/3‑149 (MQ=255)
tGTACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCT‑TCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTACACCACGTTCCCTTAATATTTCAGatata > 2:39154/1‑149 (MQ=25)
aCGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCT‑TCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCa > 2:840360/1‑149 (MQ=255)
aCGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCT‑TCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTACACCACGTTCCCTTAATATTTCAGATATATCa > 1:753651/1‑149 (MQ=25)
cGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCT‑TCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAACGTTTACACGACGTTCTCTTAATATTTCAGATATATCAc > 1:483217/1‑149 (MQ=255)
cGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCT‑TCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCAc > 1:1289619/1‑149 (MQ=255)
cGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCT‑TCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCAc > 2:1020605/1‑149 (MQ=255)
ctcATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCT‑TCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGAt > 1:1319846/1‑149 (MQ=255)
ctcATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCT‑TCCAAATTTGATACAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTACACCACGTTCCCTTAATATTTCAGATATATCACGAt > 1:1613855/1‑149 (MQ=40)
tcaATCCGCCATTTGTAATAAGCTTTTTTATGCTTTTTCT‑TCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTACACCACGTTCCCTTAATATTTCAGATATATCACGATAACt < 1:186864/149‑1 (MQ=18)
tcaATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCT‑TCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAAGGTTAACGCCAAGTTCACTTAATTTTTTAGATACATAAAGATattc > 1:414986/1‑146 (MQ=11)
tcaATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCT‑TCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCt > 1:106679/1‑149 (MQ=255)
tcaATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCT‑TCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCt < 2:1629479/149‑1 (MQ=11)
tcaATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCT‑TCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTACACCACGTTCCCTTAATATTTCAGATATATCACGATAACt < 1:1427637/149‑1 (MQ=18)
aTACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCT‑TCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTACACCACGTTCCCTTAATATTTCAGATATATCACGATAACTCaa < 1:830013/149‑1 (MQ=18)
tACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCT‑TCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAAt < 1:1709407/149‑1 (MQ=11)
tACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCT‑TCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAAt < 1:862125/149‑1 (MQ=11)
aCGCCATTTGTAATAAGCTTTTTTATGCTTTTTCT‑TCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTACACCACGTTCCCTTAATATTTCAGATATATCACGATAACTCAATg > 1:513334/1‑149 (MQ=21)
aCGCCACTTGTATTAAGCTTTTTTATGCTTTTTCT‑TCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTACACCACGTTCCCTTAATATTTCAGATATATCACGATAACTCAATg < 1:719416/149‑1 (MQ=255)
cGCCATTTGTAATAAGCTTTTTTATGCTTTTTCT‑TCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAACGTTTACACCACGTTCTCTTAACATTGCAGATATATCACGATAGCTCAATgc < 2:1935692/149‑2 (MQ=11)
ttGTAATAAGCTTTTTTATGTTTTTTCT‑TCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCt < 2:1467583/149‑1 (MQ=11)
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GTTGCTTACGCAACCAAATATCTAATGTATGTCCCTCTGCATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCT‑TCCAAATTTGATACAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTACACCACGTTCCCTTAATATTTCAGATATATCACGATAACTCAATGTATATCTTAGATAGTAGCCAACGGCTACAGTGATAACATCCTTGTTAA > CP000730/36230‑36526
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
