Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A51 F1 I1 R1
|
20 |
58.0 |
3778966 |
96.2% |
3635365 |
75.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| JC |
REL606 |
3,145,826 |
Δ7 bp |
intergenic (+157/‑32) |
dnaG → / → rpoD |
DNA primase/RNA polymerase sigma factor |
|
| |
seq id |
position |
reads (cov) |
reads (cov) |
score |
skew |
freq |
annotation |
gene |
product |
| * |
? |
REL606 |
= 3145825 | 1 (0.020) | 47 (0.820) |
33/146 |
0.6 |
97.9% |
intergenic (+156/‑39) |
dnaG/rpoD |
DNA primase/RNA polymerase sigma factor |
| ? | REL606 |
3145833 = |
1 (0.020) | intergenic (+164/‑31) |
dnaG/rpoD |
DNA primase/RNA polymerase sigma factor |
CCTCGTAATTATCGTTGGCGGTAAACAACCGTTGGATTTCAGCGTTAACGGCTGAAGGACATCGGGTCAATCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/3145751‑3145825
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccAACCTCATGAAATAAGTGTGGATACCGTCTTATGGAGCAAAACCCGCAGTCACAGCTGAAACTTCTTGTCACC > REL606/3145833‑3145905
CCTCGTAATTATCGTTGGCGGTAAACAACCGTTGGATTTCAGCGTTAACGGCTGAAGGACATCGGGTCAATCGCCA < 1:1713472/76‑1
CTCGTAATTATCGTTGGCGGTAAACAACCGTTGGATTTCAGCGTTAACGGCTGAAGGACATCGGGTCAATCGCCAA > 1:1558450/1‑76
TCGTAATTATCGTTGGCGGTAAACAACCGTTGGATTTCAGCGTTAACGGCTGAAGGACATCGGGTCAATCGCCAAC < 1:1792157/76‑1
CGTAATTATCGTTGGCGGTAAACAACCGTTGGATTTCAGCGTTAACGGCTGAAGGACATCGGGTCAATCGCCAACC > 2:482475/1‑76
CGTAATTATCGTTGGCGGTAAACAACCGTTGGATTTCAGCGTTAACGGCTGAAGGACATCGGGTCAATCGCCAACC > 1:1365234/1‑76
TAATTATCGTTGGCGGTAAACAACCGTTGGATTTCAGCGTTAACGGCTGAAGGACATCGGGTCAATCGCCAACCTC > 2:979081/1‑76
TAATTATCGTTGGCGGTAAACAACCGTTGGATTTCAGCGTTAACGGCTGAAGGACATCGGGTCAATCGCCAACCTC < 2:1625892/76‑1
ATTATCGTTGGCGGTAAACAACCGTTGGATTTCAGCGTTAACGGCTGAAGGACATCGGGTCAATCGCCAACCTCAT < 1:1176424/76‑1
ATTATCGTTGGCGGTAAACAACCGTTGGATTTCAGCGTTAACGGCTGAAGGACATCGGGTCAATCGCCAACCTCAT < 1:789626/76‑1
TATCGTTGGCGGTAAACAACCGTTGGATTTCAGCGTTAACGGCTGAAGGACATCGGGTCAATCGCCAACCTCATGA < 1:1062386/76‑1
TATCGTTGGCGGTAAACAACCGTTGGATTTCAGCGTTAACGGCTGAAGGACATCGGGTCAATCGCCAACCTCATGA < 2:79610/76‑1
GTTGGCGGTAAACAACCGTTGGATTTCAGCGTTAACGGCTGAAGGACATCGGGTCAATCGCCAACCTCATGAAATA > 1:688554/1‑76
TTGGCGGTAAACAACCGTTGGATTTCAGCGTTAACGGCTGAAGGACATCGGGTCAATCGCCAACCTCATGAAATAA > 1:1789767/1‑76
TTGGCGGTAAACAACCGTTGGATTTCAGCGTTAACGGCTGAAGGACATCGGGTCAATCGCCAACCTCATGAAATAA > 1:1355056/1‑76
TTGGCGGTAAACAACCGTTGGATTTCAGCGTTAACGGCTGAAGGACATCGGGTCAATCGCCAACCTCATGAAATAA > 1:1402415/1‑76
TTGGCGGTAAACAACCGTTGGATTTCAGCGTTAACGGCTGAAGGACATCGGGTCAATCGCCAACCTCATGAAATAA > 1:231341/1‑76
TTGGCGGTAAACAACCGTTGGATTTCAGCGTTAACGGCTGAAGGACATCGGGTCAATCGCCAACCTCATGAAATAA > 1:431907/1‑76
TGGCGGTAAACAACCGTTGGATTTCAGCGTTAACGGCTGAAGGACATCGGGTCAATCGCCAACCTCATGAAATAAG > 1:1047948/1‑76
GGCGGTAAACAACCGTTGGATTTCAGCGTTAACGGCTGAAGGACATCGGGTCAATCGCCAACCTCATGAAATAAGT > 2:1860364/1‑76
TAAACAACCGTTGGATTTCAGCGTTAACGGCTGAAGGACATCGGGTCAATCGCCAACCTCATGAAATAAGTGTGGA > 2:1136264/1‑76
AAACAACCGTTGGATTTCAGCGTTAACGGCTGAAGGACATCGGGTCAATCGCCAACCTCATGAAATAAGTGTGGAT < 1:716908/76‑1
AAACAACCGTTGGATTTCAGCGTTAACGGCTGAAGGACATCGGGTCAATCGCCAACCTCATGAAATAAGTGTGGAT < 1:1550254/76‑1
ACAATCGTTGGATTTCAGCGTTAACGGCTGAAGGACATCGGGTCAATCGCCAACCTCATGAAATAAGTGTGGATAC < 1:1250920/76‑1
ACAACCGTTGGATTTCAGCGTTAACGGCTGAAGGACATCGGGTCAATCGCCAACCTCATGAAATAAGTGTGGATAC < 1:826267/76‑1
GATTTCAGCGTTAACGGCTGAAGGACATCGGGTCAATCGCCAACCTCATGAAATAAGTGTGGATACCGTCTTATGG < 2:934466/76‑1
GATTTCAGCGTTAACGGCTGAAGGACATCGGGTCAATCGCCAACCTCATGAAATAAGTGTGGATACCGTCTTATGG < 2:293657/76‑1
GATTTCAGCGTTAACGGCTGAAGGACATCGGGTCAATCGCCAACCTCATGAAATAAGTGTGGATACCGTCTTATGG < 2:1722482/76‑1
TTCAGCGTTAACGGCTGAAGGACATCGGGTCAATCGCCAACCTCATGAAATAAGTGTGGATACCGTCTTATGGAGC > 1:1209251/1‑76
TTCAGCGTTAACGGCTGAAGGACATCGGGTCAATCGCCAACCTCATGAAATAAGTGTGGATACCGTCTTATGGAGC > 2:355126/1‑76
TCAGCGTTAACGGCTGAAGGACATCGGGTCAATCGCCAACCTCATGAAATAAGTGTGGATACCGTCTTATGGAGCA < 1:444128/76‑1
CAGCGTTAACGGCTGAAGGACATCGGGTCAATCGCCAACCTCATGAAATAAGTGTGGATACCGTCTTATGGAGCAA > 1:157688/1‑76
CAGCGTTAACGGCTGAAGGACATCGGGTCAATCGCCAACCTCATGAAATAAGTGTGGATACCGTCTTATGGAGCAA < 1:1804670/76‑1
GTTAACGGCTGAAGGACATCGGGTCAATCGCCAACCTCATGAAATAAGTGTGGATACCGTCTTATGGAGCAAAACC < 2:404592/76‑1
TTAACGGCTGAAGGACATCGGGTCAATCGCCAACCTCATGAAATAAGTGTGGATACCGTCTTATGGAGCAAAACCC < 2:1463458/76‑1
TAACGGCTGAAGGACATCGGGTCAATCGCCAACCTCATGAAATAAGTGTGGATACCGTCTTATGGAGCAAAACCCG > 2:1553003/1‑76
TAACGGCTGAAGGACATCGGGTCAATCGCCAACCTCATGAAATAAGTGTGGATACCGTCTTATGGAGCAAAACCCG < 2:654219/76‑1
AACGGCTGAAGGACATCGGGTCAATCGCCGACCTCATGAAATAAGTGTGGATACCGTCTTATGGAGCAAAACCCGC < 1:968768/76‑1
CTGAAGGACATCGGGTCAATCGCCAACCTCATGAAATAAGTGTGGATACCGTCTTATGGAGCAAAACCCGCAGTCA > 1:435766/1‑76
GAAGGACATCGGGTCAATCGCCAACCTCATGAAATAAGTGTGGATACCGTCTTATGGAGCAAAACCCGCAGTCACA > 2:1290783/1‑76
GAAGGACATCGGGTCAATCGCCAACCTCATGAAATAAGTGTGGATACCGTCTTATGGAGCAAAACCCGCAGTCACA < 1:486354/76‑1
AAGGACATCGGGTCAATCGCCAACCTCATGAAATAAGTGTGGATACCGTCTTATGGAGCAAAACCCGCAGTCACAG > 2:1439141/1‑76
GGACATCGGGTCAATCGCCAACCTCATGAAATAAGTGTGGATACCGTCTTATGGAGCAAAACCCGCAGTCACAGCT < 2:1077118/76‑1
GACATCGGGTCAATCGCCAACCTCATGAAATAAGTGTGGATACCGTCTTATGGAGCAAAACCCGCAGTCACAGCTG > 1:579954/1‑76
CAATCGCCAACCTCATGAAATAAGTGTGGATACCGTCTTATGGAGCAAAACCCGCAGTCACAGCTGAAACTTCTTG > 1:1805150/1‑76
GCCAACCTCATGAAATAAGTGTGGATACCGTCTTATGGAGCAAAACCCGCAGTCACAGCTGAAACTTCTTGTCACC > 2:1353058/1‑76
GCCAACCTCATGAAATAAGTGTGGATACCGTCTTATGGAGCAAAACCCGCAGTCACAGCTGAAACTTCTTGTCACC > 2:1666430/1‑76
GCCAACCTCATGAAATAAGTGTGGATACCGTCTTATGGAGCAAAACCCGCAGTCACAGCTGAAACTTCTTGTCACC > 2:724389/1‑76
CCTCGTAATTATCGTTGGCGGTAAACAACCGTTGGATTTCAGCGTTAACGGCTGAAGGACATCGGGTCAATCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/3145751‑3145825
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccAACCTCATGAAATAAGTGTGGATACCGTCTTATGGAGCAAAACCCGCAGTCACAGCTGAAACTTCTTGTCACC > REL606/3145833‑3145905
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
|---|
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |
GATK/CNVnator alignment
N/A
