mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 649,342 | G→T | T487N (ACC→AAC) | mrdA ← | transpeptidase involved in peptidoglycan synthesis (penicillin‑binding protein 2) |
| MC JC | 1,303,175 | Δ1,633 bp | [oppD]–[cls] | [oppD], oppF, yciU, [cls] | |
| RA | 1,329,516 | C→T | H33Y (CAC→TAC) | topA → | DNA topoisomerase I |
| RA | 1,332,148 | (T)6→5 | intergenic (+131/‑79) | topA → / → cysB | DNA topoisomerase I/DNA‑binding transcriptional dual regulator, O‑acetyl‑L‑serine‑binding |
| JC | 1,733,297 | (CGTATGAA)1→2 | coding (333/1413 nt) | pykF → | pyruvate kinase |
| RA | 2,035,629 | (C)5→6 | coding (228/768 nt) | wbbD ← | putative glycosyltransferase WbbD |
| RA | 2,193,779 | G→T | L143I (CTT→ATT) | yeiB ← | conserved inner membrane protein |
| RA | 2,818,071 | C→A | A305D (GCT→GAT) | sdaC → | predicted serine transporter |
| RA | 3,029,134 | T→C | intergenic (‑673/+388) | ECB_02828 ← / ← yghD | Polysialic acid transport protein kpsM/predicted secretion pathway M‑type protein, membrane anchored |
| JC | 3,145,826 | Δ7 bp | intergenic (+157/‑32) | dnaG → / → rpoD | DNA primase/RNA polymerase sigma factor |
| RA | 3,497,383 | T→A | Q218L (CAG→CTG) | glgP ← | glycogen phosphorylase |
| RA | 3,600,510 | G→A | G476E (GGA→GAA) | treF → | cytoplasmic trehalase |
| RA | 3,762,741 | A→T | K662I (AAA→ATA) | spoT → | bifunctional (p)ppGpp synthetase II/ guanosine‑3',5'‑bis pyrophosphate 3'‑pyrophosphohydrolase |
| RA | 3,875,632 | (T)7→8 | intergenic (‑66/+287) | glmU ← / ← atpC | bifunctional N‑acetylglucosamine‑1‑phosphate uridyltransferase/glucosamine‑1‑phosphate acetyltransferase/F0F1 ATP synthase subunit epsilon |
| MC JC | 3,894,997 | Δ6,934 bp | IS150‑mediated | rbsD–[yieO] | rbsD, rbsA, rbsC, rbsB, rbsK, rbsR, [yieO] |
| RA | 4,108,409 | T→C | K32E (AAG→GAG) | metJ ← | transcriptional repressor protein MetJ |
| RA | 4,167,556 | G→A | E866K (GAA→AAA) | rpoC → | DNA‑directed RNA polymerase subunit beta' |
| JC JC | 4,524,522 | IS186 (+) +6 bp | coding (494‑499/549 nt) | fimA → | major type 1 subunit fimbrin (pilin) |
| RA | 4,561,758 | G→A | S993S (AGC→AGT) | hsdR ← | endonuclease R |
| JC JC | 4,607,664 | IS1 (–) +9 bp | coding (202‑210/1323 nt) | deoA → | thymidine phosphorylase |