Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A51 F1 I1 R1
|
20 |
58.0 |
3778966 |
96.2% |
3635365 |
75.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| JC JC |
REL606 |
4,607,664 |
IS1 (–) +9 bp |
coding (202‑210/1323 nt) |
deoA → |
thymidine phosphorylase |
|
| |
seq id |
position |
reads (cov) |
reads (cov) |
score |
skew |
freq |
annotation |
gene |
product |
| * |
? |
REL606 |
4550679 = | NA (NA) | 49 (0.830) |
29/150 |
1.0 |
100% |
noncoding (1/768 nt) |
IS1 |
repeat region |
| ? | REL606 |
4607664 = |
0 (0.000) | coding (202/1323 nt) |
deoA |
thymidine phosphorylase |
| * |
? |
REL606 |
= 4551446 | NA (NA) | 82 (1.420) |
50/148 |
0.1 |
100% |
noncoding (768/768 nt) |
IS1 |
repeat region |
| ? | REL606 |
= 4607672 |
0 (0.000) | coding (210/1323 nt) |
deoA |
thymidine phosphorylase |
CTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/4550753‑4550679
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ACCGTTCTCGACTGGAAAAGCCTGCATCTGAATGGCCCGATTGTTGATAAACATTCCACTGGTGGCGTCGGCG > REL606/4607664‑4607736
CTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCA < 1:509490/76‑1
CTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCA < 1:141708/76‑1
CTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCA < 1:773119/76‑1
taATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAC < 1:434435/74‑1
TGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAC > 1:1321363/1‑76
TGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAC < 1:729574/76‑1
TGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAC > 1:188694/1‑76
GATAGAAACAGAAGCCACTGGAGCACCTCAAAAGCACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCACg < 2:1824519/76‑2
GATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCACC > 2:405772/1‑76
GATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCACC > 2:658013/1‑76
TAGAAACAGAACCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCACCGT < 1:60313/76‑1
AGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCACCGTT > 2:822325/1‑76
AGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCACCGTT > 1:1517105/1‑76
GAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCACCGTTC > 1:417296/1‑76
AAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCACCGTTCT < 2:1677690/76‑1
AACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCACCGTTCTC < 2:1656486/76‑1
AACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCACCGTTCTC < 2:142608/76‑1
AACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCACCGTTCTC < 1:1485469/76‑1
AGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCACCGTTCTCGAC > 2:858790/1‑76
GAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCACCGTTCTCGACT > 2:41057/1‑76
GAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCACCGTTCTCGACT > 2:459481/1‑76
AGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCACCGTTCTCGACTGG < 1:596374/76‑1
CCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCACCGTTCTCGACTGGAA > 2:327098/1‑76
CCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCACCGTTCTCGACTGGAA > 2:1467574/1‑76
CTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCACCGTTCTCGACTGGAAAAG > 1:1132126/1‑76
GGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCACCGTTCTCGACTGGAAAAGCC > 1:85832/1‑76
GCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCACCGTTCTCGACTGGAAAAGCCTGC > 2:1882096/1‑76
CACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCACCGTTCTCGACTGGAAAAGCCTGCA < 2:463922/76‑1
ACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCACCGTTCTCGACTGGAAAAGCCTGCAT > 1:1622907/1‑76
CTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCACCGTTCTCGACTGGAAAAGCCTGCATCT < 1:1510158/76‑1
TCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCACCGTTCTCGACTGGAAAAGCCTGCATCTG < 1:743470/76‑1
AAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCACCGTTCTCGACTGGAAAAGCCTGCATCTGAA > 2:866262/1‑76
AAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCACCGTTCTCGACTGGAAAAGCCTGCATCTGAA > 2:265366/1‑76
AAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCACCGTTCTCGACTGGAAAAGCCTGCATCTGAA < 2:490214/76‑1
ACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCACCGTTCTCGACTGGAAAAGCCTGCATCTGAATGGCCC < 1:7899/76‑1
ACCATCATACACTAAACCAGTAAGTTGTCAGCATCACCTCCGTTCTCGACTGGAAAAGCCTGCATCTGAATGGCCC < 2:475856/76‑1
ACTAAATCAGTAAGTTGGCAGCATCACCACCGTTCTCGACTGGAAAAGCCTGCATCTGAATGGCCCGATTGTTGAT > 1:1030094/1‑76
ccAAATCAGTAAGTTGGCAGCATCACCACCGTTCTCGACTGGAAAAGCCTGCATCTGAATGGCCCGATTGTTGATA > 1:644450/3‑76
TAAATCAGTAAGTTGGCAGCATCACCACCGTTCTCGACTGGAAAAGCCTGCATCTGAATGGCCCGATTGTTGATAA > 1:940051/1‑76
GTAAGTTGGCAGCATCACCACCGTTCTCGACTGGAAAAGCCTGCATCTGAATGGCCCGATTGTTGATAAACATTCC < 1:1527317/76‑1
TAAGTTGGCAGCATCACCACCGTTCTCGACTGGAAAAGCCTGCATCTGAATGGCCCGATTGTTGATAAACATTCCA < 1:41057/76‑1
TAAGTTGGCAGCATCACCACCGTTCTCGACTGGAAAAGCCTGCATCTGAATGGCCCGATTGTTGATAAACATTCCA > 2:663744/1‑76
TAAGTTGGCAGCATCACCACCGTTCTCGACTGGAAAAGCCTGCATCTGAATGGCCCGATTGTTGATAAACATTCCA < 1:459481/76‑1
TAAGTTGGCAGCATCACCACCGTTCTCGACTGGAAAAGCCTGCATCTGAATGGCCCGATTGTTGATAAACATTCCA > 2:295344/1‑76
GTTGGCAGCATCACCACCGTTCTCGACTGGAAAAGCCTGCATCTGAATGGCCCGATTGTTGATAAACATTCCACTG < 2:962719/76‑1
GCAGCATCACCACCGTTCTCGACTGGAAAAGCCTGCATCTGAATGGCCCGATTGTTGATAAACATTCCACTGGTGG < 1:786981/76‑1
GCATCACCACCGTTCTCGACTGGAAAAGCCTGCATCTGAATGGCCCGATTGTTGATAAACATTCCACTGGTGGCGT > 1:244132/1‑76
ACCACCGTTCTCGACTGGAAAAGCCTGCATCTGAATGGCCCGATTGTTGATAAACATTCCACTGGTGGCGTCGGCG < 2:796592/76‑1
ACCACCGTTCTCGACTGGAAAAGCCTGCATCTGAATGGCCCGATTGTTGATAAACATTCCACTGGTGGCGTCGGCG > 2:1796427/1‑76
CTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/4550753‑4550679
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ACCGTTCTCGACTGGAAAAGCCTGCATCTGAATGGCCCGATTGTTGATAAACATTCCACTGGTGGCGTCGGCG > REL606/4607664‑4607736
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
|---|
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |
GATK/CNVnator alignment
N/A
