Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A114 F1 I1 R1 20 239.5 15463816 93.1% 14396812 76.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
JC REL606 2,298,770 (ATCACTGC)1→2 coding (313/1359 nt) glpT ← sn‑glycerol‑3‑phosphate transporter

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 2298762 =24 (0.100)184 (0.800) 94/148 0.5 91.4% coding (321/1359 nt) glpT sn‑glycerol‑3‑phosphate transporter
?REL606 = 2298769 11 (0.050)coding (314/1359 nt) glpT sn‑glycerol‑3‑phosphate transporter

Only 100 of 190 total aligned reads displayed.

CATGGGTTCGGTATCGGATCGCTCGAATCCGCGCGTTTTCCTGCCCGCAGGTTTGATTCTGGCGGCGGCAGTGATG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/2298837‑2298762
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gCAGTGATGTTGTTTATGGGCTTTGTGCCATGGGCGACGTCGAGCATTGCGGTGATGTTTGTACTGTTGTTCCTCT  <  REL606/2298769‑2298695
                                                                                                                                                       
CATGGGTTCGGTATCGGATCGCTCGAATCCGCGCGTTTTCCTGCCCGCAGGTTTGATTCTGGCGGCGGCAGTGATG                                                                             <  1:3971276/76‑1
  TGGGTTCGGTATCGGATCGCTCGAATCCGCGCGTTTTCCTGCCCGCAGGTTTGATTCTGGCGGCGGCAGTGATGCA                                                                           <  1:3553228/76‑1
   GGGTTTGGTATCGGATCGCTCGAATCCGCGCGTTTTCCTGCCCGCAGGTTTGATTCTGGCGGCGGCAGTGATGCAG                                                                          <  1:7016868/76‑1
    GGTTCGGTATCGGATCGCTCGAATCCGCGCGTTTTCCTGCCCGCAGGTTTGATTCTGGCGGCGGCAGTGATGCAGT                                                                         <  1:6649100/76‑1
    GGTTCGGTATCGGATCGCTCGAATCCGCGCGTTTTCCTGCCCGCAGGTTTGATTCTGGCGGCGGCAGTGATGCAGT                                                                         <  1:6997556/76‑1
    GGTTCGGTATCGGATCGCTCGAATCCGCGCGTTTTCCTGCCCGCAGGTTTGATTCTGGCGGCGGCAGTGATGCAGT                                                                         <  1:3780371/76‑1
    GGTTCGGTATCGGATCGCTCGAATCCGCGCGTTTTCCTGCCCGCAGGTTTGATTCTGGCGGCGGCAGTGATGCAGT                                                                         <  1:5504181/76‑1
     GTTCGGTATCGGATCGCTCGAATCCGCGCGTTTTCCTGCCCGCAGGTTTGATTCTGGCGGCGGCAGTGATGCAGTG                                                                        <  1:5903643/76‑1
     GTTCGGTATCGGATCGCTCGAATCCGCGCGTTTTCCTGCCCGCAGGTTTGATTCTGGCGGCGGCAGTGATGCAGTG                                                                        <  1:6121582/76‑1
     GTTCGGTATCGGATCGCTCGAATCCGCACGTTTTCCTGCCCGCAGGTTTGATTCTGGCGGCGGCAGTGATGCAGTG                                                                        <  1:3193995/76‑1
       TCGGTATCGGATCGCTCGAATCCGCGCGTTTTCCTGCCCGCAGGTTTGATTCTGGCGGCGGCCGGGGTGCAGTGAT                                                                      >  1:2703223/1‑76
        CGGTATCGGATCGCTCGAATCCGCGCGTTTTCCTGCCCGCAGGTTTGATTCTGGCGGCGGCCGTGGTGCAGTGgag                                                                     >  2:2503006/1‑73
              CGGATCGCTCGAATCCGCGCGTTTTCCTGCCCGCAGGTTTGATTCTGGCGGCGGCCGGGATGCAGTGATGTTGTTT                                                               >  2:4802993/1‑76
              CGGATCGCTCGAATCCGCGCGTTTTCCTGCCCGCAGGTTTGATTCTGGCGGCGGCAGTGATGCCGTGATGTTGTTT                                                               >  1:2841015/1‑76
              CGGATCGCTCGAATCCGCGCGTTCTCCTGCCCGCAGGTTTGATTCTGGCGGCGGCAGTGATGCAGTGATGTTGTTT                                                               <  1:1904347/76‑1
               GGATCGCTCGAATCCGCGCGTTTTCCTGCCCGCAGGTTTGATTCTGGCGGCGGCAGTGATGCAGTGATGTTGTTTA                                                              <  2:2325794/76‑1
               GGATCGCTCGAATCCGCGCGTTTTCCTGCCCGCAGGTTTGATTCTGGCGGCGGCAGTGATGCAGTGATGTTGTTTA                                                              <  2:1204487/76‑1
                GATCGCTCGAATCCGCGCGTTTTCCTGCCCGCAGGTTTGATTCTGGCGGCGGCAGTGATGCAGTGATGTTGTTTAT                                                             <  1:4314205/76‑1
                  TCGCTCGAATCCGCGCGTTTTCCTGCCCGCAGGTTTGATTCTGGCGGCGGCAGTGATGGAGTGATGTTGTTTATGG                                                           >  2:293256/1‑76
                  TCGCTCGAATCCGCGCGTTTTCCTGCCCGCAGGTTTGATTCTGGCGGCGGCAGTGATGCAGTGATGTTGTTTATGG                                                           <  2:2114017/76‑1
                  TCGCTCGAATCCGCGCGTTTTCCTGCCCGCAGGTTTGATTCTGGCGGCGGCAGTGATGCAGTGATGTTGTTTATGG                                                           <  2:3784487/76‑1
                    GCTCGAATCCGCGCGTTTTCCTGCCCGCAGGTTTGATTCTGGCGGCGGCCGGGGTGCGGTGAGGTTGTTTATGGGC                                                         >  1:2154761/1‑76
                     CTCGAATCCGCGCGTTTTCCTGCCCGCAGGTTTGATTCTTGCGGCGGCAGAGATGCAGTGGTGGTGTTTATGGGgt                                                        >  2:1132876/1‑74
                       CGAATCCGCGCGTTTTCCTGCCCGCAGGTTTGATTCTGGCGGCGGCAGTGATGCCGTGATGTTGTTTATGGGCTTT                                                      >  2:2663472/1‑76
                       CGAATCCGCGCGTTTTCCTGCCCGCAGATTTGATTCTGGCGGCGGCAGTGATGCAGTGATGTTGTTTATGGGCTTT                                                      <  1:1031687/76‑1
                       CGAATCCGCCCGTTTTCCTGCCCGCAGGTTTGATTCTGGCGGCGGCAGTGATGCAGTGATGTTGTTTATGGGCTTT                                                      <  1:5797871/76‑1
                         AATCCGCGCGTTTTCCTGCCCGCAGGTTTGATTCTGGCGGCGGCAGTGATGCAGGGATGTTGTTTATGGGCTTTGT                                                    >  1:3817064/1‑76
                            CCGCGCGTTTTCCTGCCCGCAGGTTTGATTCTGGCGGCGGCAGTGATGCAGTGATGTTGTTTATGGGCTTTGTGCC                                                 <  1:2797067/76‑1
                             CGCGCGTTTTCCTGCCCGCAGGTTTGATTCTGGCGGCGGCAGTGATGCAGTGATGTTGTTTATGGGCTTTGTGCCA                                                <  2:3370971/76‑1
                              GCGCGTTTTCCTGCCCGCAGGTTTGATTCTGGCGGCGGCAGTGATGCAGTGATGTTGTTTATGGGCTTTGTGCCAT                                               <  1:7390150/76‑1
                               CGCGTTTTCCTGCCCGCAGGTTTGATTCTGGCGGCGGCAGTGATGCAGTGATGTTGTTTATGGGCTTTGTGCCATG                                              >  1:6070187/1‑76
                                GCGTTTTCCTGCCCGCAGGTTTGATTCTGGCGGCGGCAGTGATGCAGTGATGTTGTTTATGGGCTTTGTGCCATGG                                             <  2:1407491/76‑1
                                GCGTTTTCCTGCCCGCAGGTTTGATTCTGGCGGCGGCAGTGATGCAGTGATGTTGTTTATGGGCTTTGTGCCATGG                                             <  1:5709256/76‑1
                                 CGTTTTCCTGCCCGCAGGTTTGATTCTGGCGGCGGCAGTGATGCAGTGATGTTGTTTATGGGCTTTGTGCCATGGG                                            <  2:2629548/76‑1
                                   TTTTCCTGCCCGCAGGTTTGATTCTGGCGGCGGCAGTGATGCAGTGATGTTGTTTATGGGCTTTGTGCCATGGGCG                                          <  1:5075105/76‑1
                                   TTTTCCTGCCCGCAGGTTTGATTCTGGCGGCGGCAGTGATGCAGTGATGTTGTTTATGGGCTTTGTGCCATGGGCG                                          >  1:5332677/1‑76
                                    TTTCCTGCCCGCAGGTTTGATTCTGGCGGCGGCAGTGATGCAGTGATGTTGTTTATGGGCTTTGTGCCATGGGCGg                                         >  2:856016/1‑75
                                    TTTCCTGCCCGCAGGTTTGATTCTGGCGGCGGCAGTGATGCAGTGATGTTGTTTATGGGCTTTGTGCCATGGGCGA                                         <  1:6396716/76‑1
                                    TTTCCTGCCCGCAGGTTTGATTCTGGCGGCGGCAGTGATGCAGAGATGTTGGTTATGGGCTTTGTGCCATGGGGGA                                         >  2:6398331/1‑76
                                     TTCCTGCCCGCAGGTTTGATTCTGGCGGCGGCAGTGATGCAGTGATGTTGTTTATGGGCTTTGTGCCATGGGCGAC                                        >  2:1041756/1‑76
                                     TTCCTGCCCGCAGGTTTGATTCTGGCGGCGGCAGTGATGCAGTGATGTTGTTTATGGGCTTTGTGCCATGGGCGAC                                        >  1:4114259/1‑76
                                       CCTGCCCGCAGGTTTGATGCTGGCGGCGGCAGTGATGCAGTGATGTTGTTTATGGGCTTTGTGCCATGGGCGACGT                                      <  1:7147419/76‑1
                                        CTGCCCGCAGGTTTGATTCTGGCGGCGGCAGTGATGCAGTGATGTTGTTTATGGGCTTTGTGCCATGGGCGACGTC                                     <  2:371646/76‑1
                                        CTGCCCGCAGGTTTGATTCTGGCGGCGGCAGTGATGCAGTGATGTTGTTTATGGGCTTTGTGCCATGGGCGACGTC                                     <  1:3435779/76‑1
                                        CTGCCCGCAGGTTTGATTCTGGCGGCGGCAGTGATGCAGTGATGTTGTTTATGGGCTTTGTGCCATGGGCGACGTC                                     <  2:1895569/76‑1
                                        CTGCCCGCAGGTTTGATTCTGGCGGCGGCAGTGATGCAGTGATGTTGTTTATGGGCTTTGTGCCATGGGCGACGTC                                     >  1:4498406/1‑76
                                         TGCCCGCAGGTTTGATTCTGGCGGCGGCAGTGGTGCAGGGATGTTGTTTATGGGCTTTTTGCCCTGGGGGCCGTCG                                    >  2:2209402/1‑76
                                            CCGCAGGTTTGATTCTGGCGGCGGCAGTGATGCAGTGATGTTGTTTATGGGCTTTGTGCCATGGGCGACGTCGAGC                                 >  1:4384703/1‑76
                                            CCGCAGGTTTGATTCTGGCGGCGGCAGTGATGCAGTGATGTTGTTTATGGGCTTTGTGCCATGGGCGACGTCGAGC                                 <  2:2298127/76‑1
                                             CGCAGGTTTGATTCTGGCGGCGGCAGTGATGCAGTGATGTTGTTTATGGGCTTTGTGCCATGGGCGACGTCGAGCA                                <  1:3278886/76‑1
                                              GCAGGTTTGATTCTGGCGGCGGCAGTGATGCAGTGATGTTGTTTATGGGCTTTGTGCCATGGGCGACGTCGAACAT                               <  2:41239/76‑1
                                               CAGGTTTGATTCTGGCGGCGGCAGTGATGCAGTGATGTTGTTTATGGGCTTTGTGCCATGGGCGACGTCGAGCATT                              <  1:6197484/76‑1
                                               CAGGTTTGATTCTGGCGGCGGCAGTGATGCAGTGATGTTGTTTATGGGCTTTGTGCCATGGGCGACGTCGAGCATT                              <  1:667261/76‑1
                                               CAGGTTTGATTCTGGCGGCGGCAGTGATGCAGTGATGTTGTTTATGGGCTTTGTGCCATGGGCGACGTCGAGCATT                              <  1:2631712/76‑1
                                               CAGGTTTGATTCTGGCGGCGGCAGTGATGCAGTGATGTTGTTTATGGGCTTTGTGCCATGGGCGACGTCGAGCATT                              <  1:357743/76‑1
                                                AGGTTTGATTCTGGCGGCGGCAGTGATGCAGTGATGTTGTTTATGGGCTTTGTGCCATGGGCGACGTCGCGCATTG                             >  2:4832122/1‑76
                                                AGGTTTGATTCTGGCGGCGGCAGTGATGCAGTGATGTTGTTTATGGGCTTTGTGCCATGGGCGACGTCGAGCATTG                             <  2:4509506/76‑1
                                                 GGTTTGATTCTGGCGGCGGCAGTGATGCAGTGATGTTGTTTATGGGCTTTGTGCCATGGGCGACGTCGAGCATTGC                            <  2:440852/76‑1
                                                   TTTGATTCTGGCGGCGGCAGTGATGCAGTGATGTTGTTTATGGGCTTTGTGCCATGGGCGACGTCGAGCATTGCGG                          <  1:1217975/76‑1
                                                   TTTGATTCTGGCGGCGGCAGGGGTGCAGTGATGTTGTTTATGGGCTTTGTGCCATGGGCCACGTCGGGGCTTGCGG                          >  2:4485956/1‑76
                                                    TTGATTCTGGCGGCGGCAGTGATGCAGTGATGTTGTTTATGGGCTTTGTGCCATGGGCGACGTCGAGCATTGCGGg                         >  2:7314936/1‑75
                                                     TGATTCTGGCGGCGGCAGTGATGCAGTGATGTTGTTTATGGGCTTTGTGCCATGGGCGACGTCGAGCATTGCGGTG                        <  1:2398493/76‑1
                                                      GATTCTGGCGGCGGCAGTGATGCAGTGATGTTGTTTATGGGCTTTGTGCCATGGGCGACGTCGAGCATTGCGGTGA                       >  1:5095748/1‑76
                                                      GATTCTGGCGGCGGCAGTGAAGCAGTGATGTTGTTTATGGGCTTTGTGCCATGGGCGACGTCGAGCATTGCGGTGA                       >  2:5651291/1‑76
                                                        TTCTGGCGGCGGCAGTGATGCAGTGATGTTGTTTATGGGCTTTGTGCCATGGGCGACGTCGAGCATTGCGGTGATG                     >  2:1500128/1‑76
                                                         TCTGGCGGCGGCAGTGATGCAGTGATGTTGTTTATGGGCTTTGTGCCATGGGCGACGTCGAGCATTGCGGTGATGT                    >  1:688097/1‑76
                                                         TCTGGCGGCGGCAGTGATGCAGTGATGTTGTTTATGGGCTTTGTGCCATGGGCGACGTCGAGCATTGCGGTGATGT                    <  2:6530704/76‑1
                                                         TCTGGCGGCGGCAGTGATGCAGTGATGTTGTGTATGGGCTTTGTGCCATGGGCGACGTCGAGCATTGCGGTGATGT                    <  2:5591142/76‑1
                                                          CTGGCGGCGGCAGTGATGCAGTGATGTTGTTTATGGGCTTTGTGCCCTGGGCGACGTCGAGCATTGCGGTGATGTT                   >  2:5863785/1‑76
                                                          CTGGCGGCGGCAGTGATGCAGTGATGTTGTTTATGGGCTTTGTGCCATGGGCGACGTCGAGCATTGCGGTGATGTT                   >  2:6078791/1‑76
                                                          CTGGCGGCGGCAGTGATGCAGTGATGTTGTTTATGGGCTTTGTGCCATGGGCGACGTCGAGCATTGCGGTGATGTT                   >  1:1646270/1‑76
                                                          CTGGCGGCGGCAGTGATGCAGTGATGTTGTTTATGGGCTTTGTGCCATGGGCGACGTCGAGCATTGCGGTGATGTT                   >  2:309726/1‑76
                                                           TGGCGGCGGCAGTGATGCAGTGATGTTGTTTATGGGCTTTGTGCCATGGGCGACGTCGAGCATTGCGGTGATGTTT                  >  2:1418473/1‑76
                                                             GCGGCGGCAGTGATGCAGTGATGTTGTTTATGGGCTTTGTGCCATGGGCGACGTCGAGCATTGCGGTGATGTTTGT                <  1:5273980/76‑1
                                                             GCGGCGGCAGTGATGCAGTGATGTTGTTTATGGGCTTTGTGCCATGGGCGACGTCGAGCATTGCGGTGATGTTTGT                <  1:1100744/76‑1
                                                             GCGGCGGCAGTGATGCAGTGATGTTGTTTATGGGCTTTGTGCCATGGGCGACGTCGAGCATTGCGGTGATGTTTGT                <  2:5398536/76‑1
                                                             GCGGCGGCAGTGATGCAGTGATGTTGTTTATGGGCTTTGTGCCATGGGCGACGTCGAGCATTGCGGTGATGTTTGT                <  1:4222735/76‑1
                                                             GCGGCGGCAGTGATGCAGTGATGTTGTTTATGGGCTTTGTGCCATGGGCGACGTCGAGCATTGCGGTGATGTTTGT                <  1:296622/76‑1
                                                              CGGCGGCAGTGATGCAGTGATGTTGTTTATGGGCTTTGTGCCATGGGCGACGTCGAGCATTGCGGTGATGTTTGTA               <  1:173658/76‑1
                                                              CGGCGGCAGTGATGCAGTGATGTTGTTTATGGGCTTTGTGCCATGGGCGACGTCGAGCATTGCGGTGATGTTTGTA               <  2:365910/76‑1
                                                              CGGCGGCAGTGATGCAGTGATGTTGTTTATGGGCTTTGTGCCATGGGCGACGTCGAGCATTGCGGTGATGTTTGTA               <  1:7654503/76‑1
                                                              CGGCGGCAGTGATGCAGTGATGTTGTTTATGGGCTTTGTGCCATGGGCGACGTCGAGCATTGCGGTGATGTTTGTA               >  1:3765520/1‑76
                                                              CGGCGGCAGTGATGCAGTGATGTTGTTTATGGGCTTTGTGCCATGGGCGACGTCGAGCATTGCGGGGATGTTTGTA               >  1:4828235/1‑76
                                                               GGCGGCAGTGATGCAGTGATGTTGTTTATGGGCTTTGTGCCATGGGCGACGTCGAGCATTGCGGTGATGTTTGTAC              >  2:5232217/1‑76
                                                               GGCGGCAGTGATGCAGTGATGTTGTTTATGGGCTTTGTGCCATGGGCGACGTCGAGCATTGCGGTGATGTTTGTAC              <  2:6839591/76‑1
                                                                GCGGCAGTGATGCAGTGATGTTGTTTATGGGCTTTGTGCCATGGGCGACGTCGAGCATTGCGGTGATGTTTGTACT             <  1:2445028/76‑1
                                                                GCGGCAGTGATGCAGTGATGTTGTTTATGGGCTTTGTGCCATGGGCGACGTCGAGCATTGCGGTGATGTTTGTACT             <  2:7506463/76‑1
                                                                 CGGCAGTGATGCAGTGATGTTGTTTATGGGCTTTGTGCCATGGGCGACGTCGAGCATTGCGGTGATGTTTGTACTG            >  1:4674506/1‑76
                                                                  GGCAGTGATGCAGTGATGTTGTTTATGGGCTTTGTGCCATGGGCGACGTCGAGCATTGCGGTGATGTTTGTACTGT           <  1:21071/76‑1
                                                                   GCAGTGATGCAGTGATGTTGTTTATGGGCTTTGTTCCATGGGCGACGTCGAGCATTGCGGTGATGTTTGTACTGTT          <  1:7418117/76‑1
                                                                   GCAGTGATGCAGTGATGTTGTTTATGGGCTTTGTGCCATGGGCGACGTCGAGCATTGCGGTGATGTTTGTACTGTT          <  2:1707336/76‑1
                                                                     AGTGATGCAGTGATGTTGTTTATGGGCTTTGTGCCATGGGCGACGTCGAGCATTGCGGTGATGTTTGTACTGTTGT        <  2:6970005/76‑1
                                                                      GTGATGCAGTGATGTTGTTTATGGGCTTTGTGCCATGGGCGACGTCGAGCATTGCGGTGATGTTTGTACTGTTGTT       >  1:5886997/1‑76
                                                                       TGATGCAGTGATGTTGTTTATGGGCTTTGTGCCATGGGCGACGTCGCGCATTGCGGTGATGTTTGTCCTGTTGTTC      >  2:3199655/1‑76
                                                                        GATGCAGTGATGTTGTTTATGGGCTTTGTGCCATGGGCGACGTCGTGCTTTTCGGGGATGTTTGTACTGTTGTTCC     >  1:884051/1‑76
                                                                         ATGCAGTGATGTTGTTTATGGGCTTTGTGCCATGGGCGACGTCGAGCATTGCGGTGATGTTTGTACTGTTGTTCCT    >  1:6491644/1‑76
                                                                          TGCAGTGATGTTGTTTATGGGCTTTGTGCCATGGGCGACGTCGAGCATTGCGGTGATGTTTGTACTGTTGTTCCTC   <  2:6073853/76‑1
                                                                           GCAGTGATGTTGTTTATGGGCTTTGTGCCATGGGCGACGTCGAGCATTGCGGTGATGTTTGTACTGTTGTTCCTCT  <  1:4613118/76‑1
                                                                           GCAGTGATGTTGTTTATGGGCTTTGTGCCATGGGCGACGTCGAGCATTGCGGTGATGTTTGTACTGTTGTTCCTCT  <  2:6161700/76‑1
                                                                           GCAGTGATGTTGTTTATGGGCTTTGTGCCATGGGCGACGTCGAGCATTGCGGTGATGTTTGTACTGTTGTTCCTCT  <  1:4213817/76‑1
                                                                                                                                                       
CATGGGTTCGGTATCGGATCGCTCGAATCCGCGCGTTTTCCTGCCCGCAGGTTTGATTCTGGCGGCGGCAGTGATG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/2298837‑2298762
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gCAGTGATGTTGTTTATGGGCTTTGTGCCATGGGCGACGTCGAGCATTGCGGTGATGTTTGTACTGTTGTTCCTCT  <  REL606/2298769‑2298695

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.

GATK/CNVnator alignment

N/A