Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A72 F1 I1 R1
|
16 |
60.6 |
3810144 |
97.0% |
3695839 |
75.8 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| MC JC |
REL606 |
2,298,775 |
(GCC)3→2 |
coding (306‑308/1359 nt) |
glpT ← |
sn‑glycerol‑3‑phosphate transporter |
|
| | | | seq id |
start |
end |
size |
←reads |
reads→ |
gene |
description |
|---|
| * |
* |
÷ |
REL606 |
2298769 |
2298771 |
3 |
45 [0] |
[0] 45 |
glpT |
sn‑glycerol‑3‑phosphate transporter |
|
| |
seq id |
position |
reads (cov) |
reads (cov) |
score |
skew |
freq |
annotation |
gene |
product |
| * |
? |
REL606 |
2298772 = | 0 (0.000) | 43 (0.780) |
33/138 |
0.7 |
100% |
coding (311/1359 nt) |
glpT |
sn‑glycerol‑3‑phosphate transporter |
| ? | REL606 |
= 2298768 |
0 (0.000) | coding (315/1359 nt) |
glpT |
sn‑glycerol‑3‑phosphate transporter |
GATK/CNVnator alignment
N/A
