Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A5 F1 I1 R1
|
19 |
34.1 |
2156969 |
96.4% |
2079318 |
75.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| JC JC |
REL606 |
4,201,922 |
IS150 (+) +3 bp |
coding (636‑638/825 nt) |
iclR ← |
DNA‑binding transcriptional repressor |
|
| |
seq id |
position |
reads (cov) |
reads (cov) |
score |
skew |
freq |
annotation |
gene |
product |
| * |
? |
REL606 |
3893554 = | NA (NA) | 33 (0.990) |
26/148 |
0.3 |
96.9% |
noncoding (1/1443 nt) |
IS150 |
repeat region |
| ? | REL606 |
= 4201924 |
1 (0.030) | coding (636/825 nt) |
iclR |
DNA‑binding transcriptional repressor |
| * |
? |
REL606 |
= 3894996 | NA (NA) | 38 (1.150) |
30/146 |
0.2 |
97.3% |
noncoding (1443/1443 nt) |
IS150 |
repeat region |
| ? | REL606 |
4201922 = |
1 (0.030) | coding (638/825 nt) |
iclR |
DNA‑binding transcriptional repressor |
TTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/3893629‑3893554
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aCGATGAGGAACATGCGCTGGGGCTACGTTGCCTTGCAGCGTGTATTTTCGATGAGCACCGTGAACCGTTT < REL606/4201924‑4201855
TTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACA > 1:353942/1‑76
TTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACA > 1:842862/1‑76
TTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACA < 1:1034046/76‑1
TTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACA > 2:433143/1‑76
TTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACG < 1:244994/76‑1
TCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACGA < 1:539455/76‑1
TCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACGA < 1:1045949/76‑1
CAAAAGGGTGTTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACGAT > 2:839748/1‑76
AAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACGATG < 2:818773/76‑1
AAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACGATG < 2:688388/76‑1
AAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACGATGAG > 2:834089/1‑76
GGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACGATGAGGA < 2:28173/76‑1
GTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACGATGAGGAAC < 1:810274/76‑1
TTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACGATGAGGAACATG > 2:784789/1‑76
TTTTGGCTTTAACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACGATGAGGAACATG > 1:137485/1‑76
GGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACGATGAGGAACATGCGCT < 2:435145/76‑1
GACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCCGTACATGATGAGGAAAATGTGCAGGTGCT > 1:105746/1‑76
TATTAGGGGCTATTCCATTTCATNGCCCAACNANATGGGTCCAGATCACGATGAGGAACACGCGCTGGGGCTACGT > 1:998833/1‑76
TTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACGATGAGGCCCATGCGCTGGGGCTACGTTG > 2:903417/1‑76
GCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACGATGAGGAACATGCGCTGGGGCTACGTTGCCTTGC < 2:820804/76‑1
TATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACGATGAGGAACATGCGCTGGGGCTACGTTGCCTTGCAG < 1:338180/76‑1
TCCATTTCATCGTCCAACAAAATGGGTGCAGTACACGATGAGGAACATGCGCTGGGGCTACGTTGCCTTGCAGCGT > 1:374584/1‑76
CCATTTCATCGTCCAACAAAATGGGTGCAGTACACGATGAGGAACATGCGCTGGGGCTACGTTGCCTTGCAGCGTG > 2:421117/1‑76
CCATTTCATCGTCCAACAAAATGGGTGCAGTACACGATGAGGAACATGCGCTGGGGCTACGTTGCCTTGCAGCGTG > 1:529209/1‑76
CCATTTCATCGTCCAACAAAATGGGTGCAGTACACGATGAGGAACATGCGCTGGGGCTACGTTGCCTTGCAGCGTG > 2:578476/1‑76
CCATTTCATCGTCCAACAAAATGGGTGCAGTACACGATGAGGAACATGCGCTGGGGCTACGTTGCCTTGCAGCGTG < 2:114476/76‑1
TTTCATCGTCCAACAAAATGGGTGCAGTACACGATGAGAAACATGCGCTGGGGCTACGTTGCCTTGCAGCGTGTAT > 1:721684/1‑76
CATCGGCCAACAAAATGAGTGCACTACACGATGAGGAACACGCGCTGGGGCTGCGTTGCCTTGCAGCGTGTATTTT < 2:820635/76‑1
CGTCCAACAAAATGGGTGCAGTACACGATGAGGAACATGCGCTGGGGCTACGTTGCCTTGCAGCGTGTATTTTCGA > 1:307221/1‑76
CAAAATGGGTGCAGTACACGATGAGGAACATGCGCTGGGGCTACGTTGCCTTGCAGCGTGTATTTTCTATGAGCAC > 1:576759/1‑76
CAAAATGGGTGCAGTACACGATGAGGAACATGCGCTGGGGCTACGTTGCCTTGCAGCGTGTATTTTCGATGAGCAC > 2:815281/1‑76
GGTGCAGTACACGATGAGGAACATGCGCTGGGGCTACGTTGCCTTGCAGCGTGTATTTTCGATGAGCACCGTGAAC < 2:1061364/76‑1
GGTGCAGTACACGATGAGGAACATGCGCTGGGGCTACGTTGCCTAGCAGCGTGTATTTTCGATGAGCACCGTGAAC > 2:699887/1‑76
GTGCAGTACACGATGAGGAACATGCGCTGGGGCTACGTTGCCTTGCAGCGTGTATTTTCGATGAGCACCGTGAACC < 1:631839/76‑1
GTGCAGTACACGATGAGGAACATGCGCTGGGGCTACGTTGCCTTGCAGCGTGTATTTTCGATGAGCACCGTGAACC < 1:274561/76‑1
GTGCAGTACACGATGAGGAACATGCGCTGGGGCTACGTTGCCTTGCAGCGTGTATTTTCGATGAGCACCGTGAACC > 1:160796/1‑76
AGTACACGATGAGGAACATGCGCTGGGGCTACGTTGCCTTGCAGCGTGTATTTTCGATGAGCACCGTGAACCGTTT < 2:588277/76‑1
TTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/3893629‑3893554
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aCGATGAGGAACATGCGCTGGGGCTACGTTGCCTTGCAGCGTGTATTTTCGATGAGCACCGTGAACCGTTT < REL606/4201924‑4201855
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
|---|
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |
GATK/CNVnator alignment
N/A
