Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A136 F1 I1 R1
|
21 |
250.8 |
15742942 |
95.7% |
15065995 |
76.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| JC JC |
REL606 |
3,570,938 |
IS150 (+) +4 bp |
coding (139‑142/435 nt) |
uspA → |
universal stress global response regulator |
|
| |
seq id |
position |
reads (cov) |
reads (cov) |
score |
skew |
freq |
annotation |
gene |
product |
| * |
? |
REL606 |
3570938 = | 3 (0.010) | 296 (1.230) |
116/148 |
0.1 |
98.9% |
coding (139/435 nt) |
uspA |
universal stress global response regulator |
| ? | REL606 |
= 3652533 |
NA (NA) | noncoding (1443/1443 nt) |
IS150 |
repeat region |
| * |
? |
REL606 |
= 3570941 | 3 (0.010) | 371 (1.520) |
119/150 |
0.1 |
99.2% |
coding (142/435 nt) |
uspA |
universal stress global response regulator |
| ? | REL606 |
3893554 = |
NA (NA) | noncoding (1/1443 nt) |
IS150 |
repeat region |
Only 100 of 297 total aligned reads displayed.
GGTCAGCGCATGATGTGTCTCTTCTGAGATGCGTTTCTGCATATCACCCAGATTCACATCAATAAGCCCGGTGTAt‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/3571012‑3570938
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAATTGGAGTCAGA < REL606/3652533‑3652459
GTCAGCGCATGATGTGTCTCTTCTGAGATGCGTTTCTGCATATCACCCAGATTCACATCAATAAGCCCGGTGTATG > 2:5723842/1‑76
GTCAGCGCATGATGTGTCTCTTCTGAGATGCGTTTCTGCATATCACCCAGATTCACATCAATAAGCCCGGTGTATG > 1:5954551/1‑76
GTCAGCGCATGATGTGTCTCTTCTGAGATGCGTTTCTGCATATCACCCAGATTCACATCAATAAGCCCGGTGTATG < 1:4065489/76‑1
TCAGCGCATGATGTGTCTCTTCTGAGATGCGTTTCTGCATATCACCCAGATTCACATCAATAAGCCCGGTGTATGT > 1:7147597/1‑76
CAGCGCATGATGTGTCTCTTCTGAGATGCGTTTCTGCATATCACCCAGATTCACATCAATAAGCCCGGTGTATGTA < 1:4743111/76‑1
CAGCGCATGATGTGTCTCTTCTGAGATGCGTTTCTGCATATCACCCAGATTCACATCAATAAGCCCGGTGTATGTA > 1:5589061/1‑76
CAGCGCATGATGTGTCTCTTCTGAGATGCGTTTCTGCATATCACCCAGATTCACATCAATAAGCCCGGTGTATGTA < 1:3878054/76‑1
CAGCGCATGATGTGTCTCTTCTGAGATGCGTTTCTGCATATCACCCAGATTCACATCAATAAGCCCGGTGTATGTA > 2:2325706/1‑76
CAGCGCATGATGTGTCTCTTCTGAGATGCGTTTCTGCATATCACCCAGATTCACATCAATAAGCCCGGTGTATGTA < 1:6833323/76‑1
GCGCATGATGTGTCTCTTCTGAGATGCGTTTCTGCATATCACCCAGATTCACATCAATAAGCCCGGTGTATGTACT < 2:4564593/76‑1
GCGCATGATGTGTCTCTTCTGAGATGCGTTTCTGCATATCACCCAGATTCACATCAATAAGCCCGGTGTATGTACT > 2:7251326/1‑76
GCGCATGATGTGTCTCTTCTGAGATGCGTTTCTGCATATCACCCAGATTCACATCAATAAGCCCGGTGTATGTACT < 1:1647120/76‑1
CGCATGATGTGTCTCTTCTGAGATGCGTTTCTGCATATCACCCAGATTCACATCAATAAGCCCGGTGTATGTACTG < 2:7680052/76‑1
GCATGATGTGTCTCTTCTGAGATGCGTTTCTGCATATCACCCAGATTCACATCAATAAGCCCGGTGTATGTACTGA < 1:5036808/76‑1
CATGATGTGTCTCTTCTGAGATGCGTTTCTGCATATCACCCAGTTTAACATCATTAAGCCCGGGGAATGTCCTGAC > 2:3127382/1‑76
ATGATGTGTCTCTTCTGAGATGCGTTTCTGCATATCACCCAGATTCACATCAATAAGCCCGGTGTATGTACTGACC > 2:6877615/1‑76
ATGATGTGTCTCTTCTGAGATGCGTTTCTGCATATCACCCAGATTCACATCAATAAGCCCGGTGTATGTACTGACC > 1:177277/1‑76
GATGTGTCTCTTCTGAGATGCGTTTCTGCATATCACCCAGATTCACATCAATAAGCCCGGTGTATGTACTGACCCC > 2:3315521/1‑76
GATGTGTCTCTTCTGAGATGCGTTTCTGCATATCACCCAGATTCACATCAATAAGCCCGGTGTATGTACTGACCCC < 2:1729503/76‑1
ATGTGTCTCTTCTGAGATGCGTTTCTGCATATCACCCAGATTCACATCAATAAGCCCGGTGTATGTACTGACCCCA < 2:3374740/76‑1
TGTGTCTCTTCTGAGATGCGTTTCTGCATATCACCCAGATTCACATCAATAAGCCCGGTGTATGTACTGACCCCAA > 2:612393/1‑76
TGTGTCTCTTCTGAGATGCGTTTCTGCATATCACCCAGATTCACATCAATAAGCCCGGTGTATGTACTGACCCCAA > 2:1367612/1‑76
TGTGGCTCTTCTGAGATGCGTTTCTGCATATCACCCAGATTCACATCAATAAGCCCGGTGTATGTACTGACCCCAA < 2:1935254/76‑1
TGTCTCTTCTGAGATGCGTTTCTGCATATCACCCAGATTCACATCAATAAGCCCGGTGTATGTACTGACCCCAAAA < 1:3787937/76‑1
GTCTCTTCTGAGATGCGTTTCTGCATATCACCCAGATTCACATCAATAAGCCCGGTGTATGTACTGACCCCAAAAA < 2:3773370/76‑1
CTTCTGAGATGCGTTTCTGCATATCACCCAGATTCACATCAATAAGCCCGGTGTATGTACTGACCCCAAAAAGTTG > 2:1102291/1‑76
TCTGAGATGCGTTTCTGCATATCACCCAGATTCACATCAATAAGCCCGGTGTATGTACTGACCCCAAAAAGTTGGA < 1:5106286/76‑1
TCTGAGATGCGTTTCTGCATATCACCCAGATTCACATCAATAAGCCCGGTGTATGTACTGACCCCAAAAAGTTGGA > 1:4453855/1‑76
TCTGAGATGCGTTTCTGCATATCACCCAGATTCACATCAATAAGCCCGGTGTATGTACTGACCCCAAAAAGTTGGA > 2:5571449/1‑76
CTGAGATGCGTTTCTGCATATCACCCAGATTCACATCAATAAGCCCGGTGTATGTACTGACCCCAAAAAGTTGGAC > 2:4506164/1‑76
TGAGATGCGTTTCTGCATATCACCCAGATTCACATCAATAAGCCCGGTGTATGTACTGACCCCAAAAAGTTGGACA < 1:4262457/76‑1
AGATGCGTTTCTGCATATCACCCAGATTCACATCAATAAGCCCGGTGTATGTACTGACCCCAAAAAGTTGGACAGT > 2:3202403/1‑76
AGATGCGTTTCTGCATATCACCCAGATTCACATCAATAAGCCCGGTGTATGTACTGACCCCAAAAAGTTGGACAGT < 2:6645179/76‑1
GATGCGTTTCTGCATATCACCCAGATTCACATCAATAAGCCCGGTGTATGTACTGACCCCAAAAAGTTGGACAGTT < 1:4835481/76‑1
GATGCGTTTCTGCATATCACCCAGATTCACATCAATAAGCCCGGTGTATGTACTGACCCCAAAAAGTTGGACAGTT > 2:6253611/1‑76
ATGCGTTTCTGCATATCACCCAGATTCACATCAATAAGCCCGGTGTATGTACTGACCCCAAAAAGTTGGACAGTTA < 1:7426985/76‑1
ATGCGTTTCTGCATATCACCCAGATTCACATCAATAAGCCCGGTGTATGTACTGACCCCAAAAAGTTGGACAGTTA > 2:5201220/1‑76
ATGCGTTTCTGCATATCACCCAGATTCACATCAATAAGCCCGGTGTATGTACTGACCCCAAAAAGTTGGACAGTTA < 1:4894697/76‑1
ATGCGTTTCTGCATATCACCCAGATTCACATCAATAAGCCCGGTGTATGTACTGACCCCAAAAAGTTGGACAGTTA > 2:6396933/1‑76
TGCGTTTCTGCATATCACCCAGATTCACATCAATAAGCCCGGTGTATGTACTGACCCCAAAAAGTTGGACAGTTAA < 2:2412534/76‑1
GCGTTTCTGCATATCACCCAGATTCACATCAATAAGCCCGGTGTATGTACTGACCCCAAAAAGTTGGACAGTTAAA < 1:1123688/76‑1
CGTTTCTGCATATCACCCAGATTCACATCAATAAGCCCGGTGTATGTACTGACCCCAAAAAGTTGGACAGTTAAAC < 1:1443549/76‑1
GTTTCTGCATATCACCCAGATTCACATCAATAAGCCCGGTGTATGTACTGACCCCAAAAAGTTGGACAGTTAAACA < 1:2951381/76‑1
GTTTCTGCATATCACCCAGATTCACATCAATAAGCCCGGTGTATGTACTGACCCCAAAAAGTTGGACAGTTAAACA < 2:6562153/76‑1
TTTCTGCATATCACCCAGATTCACATCAATAAGCCCGGTGTATGTACTGACCCCAAAAAGTTGGACAGTTAAACAC < 1:3594438/76‑1
TTTCTGCATATCACCCAGATTCACATCAATAAGCCCGGTGTATGTACTGACCCCAAAAAGTTGGACAGTTAAACAC < 1:1988482/76‑1
TTTCTGCATATCACCCAGATTCACATCAATAAGCCCGGTGTATGTACTGACCCCAAAAAGTTGGACAGTTAAACAC > 1:5153213/1‑76
TTTCTGCATATCACCCAGATTCACATCAATAAGCCCGGTGTATGTACTGACCCCAAAAAGTTGGACAGTTAAACAC > 2:1498443/1‑76
TTCTGCATATCACCCAGATTCACATCAATAAGCCCGGTGTATGTACTGACCCCAAAAAGTTGGACAGTTAAACACG > 1:3674841/1‑76
TGCATATCACCCAGATTCACATCAATAAGCCCGGTGTATGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGG > 1:1266713/1‑76
CATATCACCCAGATTCACATCAATAAGCCCGGTGTATGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCA > 1:2637996/1‑76
ATATCACCCAGCTTCACATCAATAAGCCCGGTGTATGTACTGACCCCCCCCCGTTGGACAGTTAAACACGAGGCAT > 2:2661492/1‑76
ATATCACCCAGATTCACATCAATAAGCCCGGTGTATGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCAT < 2:7459587/76‑1
ATATCACCCAGATTCACATCAATAAGCCCGGTGTATGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCAT > 2:1278401/1‑76
TATCACCCAGATTCACATCAATAAGCCCGGTGTATGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATA > 2:784747/1‑76
ATCACCCAGATTCACATCAATAAGCCCGGTGTATGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATAT < 1:1053903/76‑1
ATCACCCAGATTCACATCAATAAGCCCGGTGTATGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATAT < 1:3283223/76‑1
TCACCCAGATTCACATCAATAAGCCCGGTGTATGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATA < 1:5391967/76‑1
TCACCCAGATTCACATCAATAAGCCCGGTGTATGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATA < 2:3993533/76‑1
TCACCCAGATTCACATCAATAAGCCCGGTGTATGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATA < 1:7230678/76‑1
CACCCAGATTCACATCAATAAGCCCGGTGTATGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAG < 1:1603390/76‑1
CACCCAGATTCACATCAATAAGCCCGGTGTATGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAG > 1:12973/1‑76
CACCCAGATTCACATCAATAAGCCCGGTGTATGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAG < 1:5422233/76‑1
CACCCAGATTCACATCAATAAGCCCGGTGTATGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAG > 1:6496120/1‑76
CACCCAGATTCACATCAATAAGCCCGGTGTATGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAG < 1:6295729/76‑1
ACCCAGATTCACATCAATAAGCCCGGTGTATGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGG > 2:4838570/1‑76
ACCCAGATTCACATCAATAAGCCCGGTGTATGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGG < 1:2450835/76‑1
CCAGATTCACATCAATAAGCCCGGTGTATGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTC > 1:3139612/1‑76
AGATTCACATCAATAAGCCCGGTGTATGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTG > 1:1836770/1‑76
GATTCACATCAATAAGCCCGGTGTATGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGA < 1:6406674/76‑1
TTCACATCAATAAGCCCGGTGTATGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATT < 2:4264649/76‑1
CACATCAATAAGCCCGGTGTATGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCC < 1:2147148/76‑1
CACATCAATAAGCCCGGTGTATGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCC > 1:661168/1‑76
ACATCAATAAGCCCGGTGTATGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGTTTCCa > 2:3920874/1‑75
TCAATAAGCCCGGTGTATGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATA > 1:1893634/1‑76
CAATAAGCCCGGTGTATGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATGGGTCTGATTCCGATAT > 2:1564705/1‑76
CAATAAGCCCGGTGTATGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATAT > 1:285513/1‑76
CAATAAGCCCGGTGTATGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATAT > 1:3557642/1‑76
CAATAAGCCCGGTGTATGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATAT < 2:2148587/76‑1
TAAGCCCGGTGTATGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCA > 2:160669/1‑76
GCCCGGTGTATGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAATT < 1:7774489/76‑1
GCCCGGTGTATGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAATT < 2:6820132/76‑1
CCCGGTGTATGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAATTG > 1:97170/1‑76
CCGGTGTATGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAATTGG > 1:452182/1‑76
CCGGTGTATGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAATTGG < 2:7110914/76‑1
CCGGTGTATGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAATTGG > 2:3712030/1‑76
CCGGTGTATGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAATTGG < 2:3627523/76‑1
CGGTGTATGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAATTGGA > 2:7378727/1‑76
CGGTGTATGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAATTGGA > 1:6251100/1‑76
GGTGTATGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAATTGGAG < 1:410257/76‑1
GGTGTATGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAACTGGAG < 1:6685602/76‑1
GTGTATGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAATTGGAGT < 2:4090365/76‑1
GTGTATGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAATTGGAGT > 1:767481/1‑76
GTGTATGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAATTGGAGT > 2:758020/1‑76
GTATGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAATTGGAGTCA > 1:2792793/1‑76
GTATGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAATTGGAGTCA < 2:5988227/76‑1
TATGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAATTGGAGTCAG > 1:5717537/1‑76
ATGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAATTGGAGTCAGA > 1:849852/1‑76
ATGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAATTGGAGTCAGA < 2:5311602/76‑1
ATGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAATTGGAGTCAGA > 2:5113044/1‑76
GGTCAGCGCATGATGTGTCTCTTCTGAGATGCGTTTCTGCATATCACCCAGATTCACATCAATAAGCCCGGTGTAt‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/3571012‑3570938
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAATTGGAGTCAGA < REL606/3652533‑3652459
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
|---|
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |
GATK/CNVnator alignment
N/A
