Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A42 F1 I1 R1
|
17 |
53.4 |
3386926 |
97.4% |
3298865 |
76.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| MC JC |
REL606 |
4,163,094 |
Δ3 bp |
coding (2239‑2241/4029 nt) |
rpoB → |
DNA‑directed RNA polymerase subunit beta |
|
| | | | seq id |
start |
end |
size |
←reads |
reads→ |
gene |
description |
|---|
| * |
* |
÷ |
REL606 |
4163094 |
4163096 |
3 |
54 [0] |
[0] 55 |
rpoB |
DNA‑directed RNA polymerase subunit beta |
|
| |
seq id |
position |
reads (cov) |
reads (cov) |
score |
skew |
freq |
annotation |
gene |
product |
| * |
? |
REL606 |
= 4163093 | 0 (0.000) | 54 (1.010) |
42/150 |
0.2 |
100% |
coding (2238/4029 nt) |
rpoB |
DNA‑directed RNA polymerase subunit beta |
| ? | REL606 |
4163097 = |
0 (0.000) | coding (2242/4029 nt) |
rpoB |
DNA‑directed RNA polymerase subunit beta |
GATK/CNVnator alignment
N/A
